View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8499_low_8 (Length: 395)

Name: NF8499_low_8
Description: NF8499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8499_low_8
NF8499_low_8
[»] chr2 (3 HSPs)
chr2 (96-180)||(9833415-9833499)
chr2 (268-312)||(9833587-9833631)
chr2 (20-58)||(9833363-9833401)
[»] chr3 (2 HSPs)
chr3 (268-309)||(51681948-51681989)
chr3 (271-307)||(47728470-47728506)


Alignment Details
Target: chr2 (Bit Score: 81; Significance: 5e-38; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 9833415 - 9833499
Alignment:
Q  96 ttaattcacctgttgaacgagactacgaatttcttgaggagtcataagatgagagaattcaacatcaacaataacattctgccct 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9833415 ttaattcacctgttgaacgagactacgaatttcttgaggagtcataagatgagagaattcaacatcaacaacaacattctgccct 9833499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 9833587 - 9833631
Alignment:
Q  268 gcttcaatcaccttcactctctcttcctctgttatccccgctata 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  9833587 gcttcaatcaccttcactctctcttcctctgttatccccgctata 9833631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 9833363 - 9833401
Alignment:
Q  20 taatctacatttcaaatcaaaataatttaccataaacaa 58  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9833363 taatctacatttcaaatcaaaataatttaccataaacaa 9833401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 309
Target Start/End: Complemental strand, 51681989 - 51681948
Alignment:
Q  268 gcttcaatcaccttcactctctcttcctctgttatccccgct 309  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  51681989 gcttcaatcaccttcactctctcttcctccgttatccccgct 51681948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 47728470 - 47728506
Alignment:
Q  271 tcaatcaccttcactctctcttcctctgttatccccg 307  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  47728470 tcaatcaccttcactctctcttcctccgttattcccg 47728506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University