View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8500_high_12 (Length: 353)
Name: NF8500_high_12
Description: NF8500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8500_high_12 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 6916192 - 6915844
Alignment:
| Q |
1 |
tcatcttttttatggaaaatatctcatgataagattttaactaattaagaaatgtattcatatatagatgcatgacaagagataagttaagtcctatacg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6916192 |
tcatcttttttatggaaaatatctcatgataagattttaactaattaagaaatgtattcata----gatgcatgacaagagataagttaagtcctatacg |
6916097 |
T |
|
| Q |
101 |
tggtgagactaccctaaaacttttattcatggtttaagagattgtgaagaagcataaatattatggaaatgatcttatctcccaagatgtttggagtaag |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6916096 |
tggtgagactatcctaaaacttttattcatggtttaagagattgtgaagaagcataaatattatggaaatgatcttatctcccaagatgtttggagtaag |
6915997 |
T |
|
| Q |
201 |
taagtttttcggtcttgggttgaatcaatggtttgattggaatgtcacaactcctaatattggtactacacgtgacaattgacaaactttctctggagtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6915996 |
taagtttttcggtcttgggttgaatcaatggtttgattggaatgtcacaactcctaatattggtactacacgtgacaattgacaaactttctctggagtt |
6915897 |
T |
|
| Q |
301 |
gctatttatgtgctttggaaagatagaaatagtttggtgttcaataggaagtc |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6915896 |
gctatttatgtgctttggaaagatagaaatagtttggtgttcaataggaagtc |
6915844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 239
Target Start/End: Complemental strand, 37979317 - 37979240
Alignment:
| Q |
156 |
aaatattatggaaatgatcttatctcccaagatgtttggagtaagtaagtttttcggtcttgggttgaatcaatggtttgattg |
239 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||| ||||||||| || |||||||||||| ||||||| ||||||| |
|
|
| T |
37979317 |
aaatattatggaa-tgatcttatctccaaagatgttttgagtaagtatgt-----ggtcttgggttgtatcaatgacttgattg |
37979240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University