View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8500_high_18 (Length: 246)
Name: NF8500_high_18
Description: NF8500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8500_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 54926 - 54679
Alignment:
| Q |
1 |
caagtaacttgggtttgtggtttccnnnnnnnnnnnnaacattgtttatatcttgcttgctctacgtatcataatagctgttattgaaaattgttggatt |
100 |
Q |
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| T |
54926 |
caagtaacttgggtttgtggtttcctttttgttttttaacattgtttatatcttgcttgctctacgtatcataatagctgttattgaaaattgttggatt |
54827 |
T |
|
| Q |
101 |
tattggaattgccttccnnnnnnnnn-------------catgttccttagttaagatttttcacagtatgtattgtacattctgaatgtagaaagttaa |
187 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54826 |
tattggaattgccttcctttttttttttttttttttcttcatgttccttagttaagatttttcacagtatgtattgtacattctgaatgtagaaagttaa |
54727 |
T |
|
| Q |
188 |
attccatttcagaacagtaaaagaaaacatcaacagcagctgatgtcc |
235 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
54726 |
attccatttcagaacagtaaaagaaaacatcaacagcagctgaggtcc |
54679 |
T |
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