View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8500_high_2 (Length: 592)
Name: NF8500_high_2
Description: NF8500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8500_high_2 |
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| [»] scaffold0372 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 15 - 573
Target Start/End: Complemental strand, 21447349 - 21446791
Alignment:
| Q |
15 |
ggacatcagagaccagctcttgtgctactgagcatccaagtccaaaacaaatggctattgaaggatataaggcgcagagtgagatggtgattgacagtct |
114 |
Q |
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| T |
21447349 |
ggacatcagagactggctcttgtgctactgagcatccaagtccaaaacaaatggctattgaaggatataaggcgcagagtgagatggtgattgacagtct |
21447250 |
T |
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| Q |
115 |
tgataggctaatcactgcctgggaagaacgaaaacagtctgttgttgtcgagggagttcacttgagtctcaactttgttgtatgtcaaaacttgattaca |
214 |
Q |
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| T |
21447249 |
tgataggctaatcactgcctgggaagaacgaaaacagtctgttgttgtcgagggagttcacttgagtctcaactttgttgtatgtcaaaacttgattaca |
21447150 |
T |
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| Q |
215 |
tgtccattannnnnnnnccgtattgatgtcaatatatatattgctgttttttccaatccactaacaataataaccgggataatcatgcagatggggctca |
314 |
Q |
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| T |
21447149 |
tgtccattattttttttccgcattgatgtcaatatatatattgctgttttttccaatccactaacaataataaccgggataatcatgcagatggggctca |
21447050 |
T |
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| Q |
315 |
tgaagaaacatccgtcgatcataccattcatgatatacattacaaatgaggagaagcacttggaaagatttgcagtgcgtgcaaaatatatgacactgga |
414 |
Q |
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| T |
21447049 |
tgaagaaacatccgtcgatcataccattcatgatatacattacaaatgaggagaagcacttggaaagatttgcagtgcgtgcaaaatatatgacactgga |
21446950 |
T |
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| Q |
415 |
tcctgctaaaaacaagtatgtgaagtatatccgaaacatcagaacaatccaggattatctctgtacgcgtgctgaaaagcatttggttcccaaagtaaac |
514 |
Q |
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| T |
21446949 |
tcctgctaaaaacaagtatgtgaagtatatccgaaacatcagaacaatccaggattatctctgtacgcgtgctgaaaagcatttggttcccaaagtaaac |
21446850 |
T |
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| Q |
515 |
aatacaaatgttgacaagagcgtcgcagccatccatgcaactgttttcagctgtcttcg |
573 |
Q |
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| T |
21446849 |
aatacaaatgttgacaagagcgtcgcagccatccatgcaactgttttcagctgtcttcg |
21446791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0372 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: scaffold0372
Description:
Target: scaffold0372; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 15 - 196
Target Start/End: Original strand, 4187 - 4368
Alignment:
| Q |
15 |
ggacatcagagaccagctcttgtgctactgagcatccaagtccaaaacaaatggctattgaaggatataaggcgcagagtgagatggtgattgacagtct |
114 |
Q |
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| T |
4187 |
ggacatcagagactggctcttgtgctactgagcatccaagtccaaaacaaatggctattgaaggatataaggcgcagagtgagatggtgattgacagtct |
4286 |
T |
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| Q |
115 |
tgataggctaatcactgcctgggaagaacgaaaacagtctgttgttgtcgagggagttcacttgagtctcaactttgttgta |
196 |
Q |
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| T |
4287 |
tgataggctaatcactgcctgggaagaacgaaaacagtctgttgttgtcgagggagttcacttgagtctcaactttgttgta |
4368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 297 - 570
Target Start/End: Original strand, 40685543 - 40685816
Alignment:
| Q |
297 |
tcatgcagatggggctcatgaagaaacatccgtcgatcataccattcatgatatacattacaaatgaggagaagcacttggaaagatttgcagtgcgtgc |
396 |
Q |
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| T |
40685543 |
tcatgcagatgggacttatgaagaaacatccttcaatcatacccttcatgatatacattacaaacgaggacaagcatatggaacgatttgccgtacgtgc |
40685642 |
T |
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| Q |
397 |
aaaatatatgacactggatcctgctaaaaacaagtatgtgaagtatatccgaaacatcagaacaatccaggattatctctgtacgcgtgctgaaaagcat |
496 |
Q |
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| T |
40685643 |
aaagtatatgaccctggaccctgctaaaaacaaatatgtaaagtatatccgaaatataagaacaatccaggattatctctgtaagcgggctgacaaacat |
40685742 |
T |
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| Q |
497 |
ttggttcccaaagtaaacaatacaaatgttgacaagagcgtcgcagccatccatgcaactgttttcagctgtct |
570 |
Q |
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| T |
40685743 |
ttagttcccaaaataaacaatacaaatgttgacaagagtgtagcagccatccatgctaccgtgttcagctgtct |
40685816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 57 - 200
Target Start/End: Original strand, 40685310 - 40685453
Alignment:
| Q |
57 |
caaaacaaatggctattgaaggatataaggcgcagagtgagatggtgattgacagtcttgataggctaatcactgcctgggaagaacgaaaacagtctgt |
156 |
Q |
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| T |
40685310 |
caaaacaaatggctgttgaaggattcaaggcccagagtgaaatggtgattgacagcctagataggctaatcacttcatgggaagaacggaaagagtccgt |
40685409 |
T |
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| Q |
157 |
tgttgtcgagggagttcacttgagtctcaactttgttgtatgtc |
200 |
Q |
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| T |
40685410 |
tgttgttgagggtgttcacttgagtctcaactttgttgtatgtc |
40685453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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