View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8500_high_4 (Length: 506)
Name: NF8500_high_4
Description: NF8500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8500_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 7714141 - 7714582
Alignment:
| Q |
1 |
tgagatgacaagtatgattttccgacaagctatttatagaagattgaatgtacactaaaacaataattaatttaggatatggatttatttcggatcagtt |
100 |
Q |
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| T |
7714141 |
tgagatgacaagtatgattttcagacaagctatttatagaaaattgaatgtacactaaaacaataattaatttaggatatggatttatttcggatcagtt |
7714240 |
T |
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| Q |
101 |
caatccacatgggtcatatatttttagggtaagga---------------ttctttaaacttcatggaaaatgtgtgaaagatagataaaattaaatata |
185 |
Q |
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| T |
7714241 |
caatccacatgggtcatatatttttagggtaaggatcatatctttaccgtttctttaaacttcatggaaaatgtgtgaaatatagataaaaataaata-a |
7714339 |
T |
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| Q |
186 |
taagtagttgggtcttaccattaaatggattccacaactattaattatttata-nnnnnnnnaagcttcattatatttttatcttttcgaatagaaaaat |
284 |
Q |
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| T |
7714340 |
taagtagttgggtcttaccattaaatagattccaccactattaattatttatatttttttttaagcttcattatatttttatcttttcgaatagaaaaat |
7714439 |
T |
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| Q |
285 |
agagatgatattaaattaaaagaattttaacttgcatttttaagggttcttctatatatcgaatgcattcggatactctttgaagagaaataaattagag |
384 |
Q |
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| T |
7714440 |
tgagatgatactaaattaaaagaattttaactcgtatttttaatgattcttc----tatcgaatgtattcgaatactctttgaaaagaaataaattagag |
7714535 |
T |
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| Q |
385 |
aaatgctaacaagtgcccataagaaacttgttagcatattatttaat |
431 |
Q |
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| T |
7714536 |
aaatactaacaaatgcccataagatacttgttagcctattatttaat |
7714582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 425 - 486
Target Start/End: Original strand, 7716521 - 7716582
Alignment:
| Q |
425 |
atttaatcacacattttcaatttttagtgttgcttcttttcatgtcaaactggtgggaccat |
486 |
Q |
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| T |
7716521 |
atttaatcacacattttcaatttttagtgttgcttcttttcatgtaaaactggtgggaccat |
7716582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 425 - 488
Target Start/End: Original strand, 7715301 - 7715364
Alignment:
| Q |
425 |
atttaatcacacattttcaatttttagtgttgcttcttttcatgtcaaactggtgggaccatgg |
488 |
Q |
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| T |
7715301 |
atttaatcacacattttcaatttttagtgttgcttcttttcatgtaaaactggtggtaccatgg |
7715364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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