View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8500_high_5 (Length: 475)
Name: NF8500_high_5
Description: NF8500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8500_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 11 - 425
Target Start/End: Original strand, 54908 - 55322
Alignment:
| Q |
11 |
cacagacccaagttacttgctaacttgatgacctaaggaccaaagtgatgctatcacgaatgaactatggacatacatatgcctggatcatactttttaa |
110 |
Q |
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| T |
54908 |
cacaaacccaagttacttgctaacttgatgacctaaggaccaaagtgatgctatcacgaatgaactatggacatacatatgcctggatcatactttttaa |
55007 |
T |
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| Q |
111 |
ttgtgaactgcatcatatgtgcaaccacattgcctaataatttcagtgtttctgaaaatcatgaaaataaagtactgatgtaaccctgcaatgtaacgtg |
210 |
Q |
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| T |
55008 |
ttgtgaactgcatcatatgtgcaaccacattgcctaataatttcagtgtttctgaaaatcatgaaaataaagtactgatgtaaccctgcaatgtaacgtg |
55107 |
T |
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| Q |
211 |
tgtaaagacttagaatgcactaggcttcaagatgttttccattcttctgtactaagtaaattgagggagcttcaggtagctaagaagatttcagcacagt |
310 |
Q |
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| T |
55108 |
tgtaaagacttagaatgcactaggcttcaagatgttttccattcttctgtactaagtaaattgagggagcttcaggtagctaagaagatttcagcacagt |
55207 |
T |
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| Q |
311 |
agcgaaatggagataatggggagatgggatttaagaagaggggtagggaatgcatcatcaattatatttaatagaaattgtggtagtagtaaacacaaat |
410 |
Q |
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| T |
55208 |
agcgaaatggagataatggggagatgggatttaagaagaggggtagggaatgcatcatcaattatatttaatagaaattgtggtagtagcaaacacaaat |
55307 |
T |
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| Q |
411 |
gttatagaactattg |
425 |
Q |
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| T |
55308 |
gttatagaactattg |
55322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 134 - 389
Target Start/End: Original strand, 33754515 - 33754761
Alignment:
| Q |
134 |
accacattgcctaataatttcagtgtttctgaaaatcatgaaaataaagtactgatgtaaccctgcaatgtaacgtgtgtaaagacttagaatgcactag |
233 |
Q |
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| T |
33754515 |
accacattacctaataaattccgtgtttctgaaaatcatgaaaaa----tactaatgcaaccctgcaatgtaatgtgtgcaaagactgagc--gcaccgg |
33754608 |
T |
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| Q |
234 |
gcttcaagatgttttccattcttctgtactaagtaaattgagggagcttcaggtagctaagaagatttcagcacagtagcgaaatggagataatggggag |
333 |
Q |
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| T |
33754609 |
acttcaaggtgctctccattcttctgtgttaagtaaattgagggagcttcatgtagctaaga---ttttagcacagtagtgaaatggatataatggggag |
33754705 |
T |
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| Q |
334 |
atgggatttaagaagaggggtagggaatgcatcatcaattatatttaatagaaatt |
389 |
Q |
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| T |
33754706 |
atgggatttaagaagaggggtagggaatgcatcatcagttacgtttaatataaatt |
33754761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 35 - 125
Target Start/End: Original strand, 33754378 - 33754468
Alignment:
| Q |
35 |
ttgatgacctaaggaccaaagtgatgctatcacgaatgaactatggacatacatatgcctggatcatactttttaattgtgaactgcatca |
125 |
Q |
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|||||||||||| | |||| | ||||||||| | |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33754378 |
ttgatgacctaacaatcaaaatcatgctatcaggtatgaactatgaacatacatatgcctgaatcatactttttaattgtgaactgcatca |
33754468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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