View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8500_high_8 (Length: 454)
Name: NF8500_high_8
Description: NF8500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8500_high_8 |
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| [»] scaffold0794 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 19 - 441
Target Start/End: Complemental strand, 11446069 - 11445645
Alignment:
| Q |
19 |
aaatgcgtgttccaacaataacacacatggtaagaaaaagccaaaatcaaacaatttatgcccaagttagtaaaacacgtgcatcaaaagtatattatat |
118 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11446069 |
aaatgtgtgttccaacaataacacacatggtaagaaaaagccaaaatcaaacaatttatgcccaagttagtaaaacacgtgcatcaaaagtatattatat |
11445970 |
T |
|
| Q |
119 |
gaaagaaataaagatcatgggcataatataaggctatatatacctttgtattctgttctttgttcaaaacatagaagagttgcaagcaagtttacacttc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11445969 |
gaaagaaataaagatcatgggcataatataaggctatatatacctttgtattgtgttcattgttcaaaacatagaagagttgcaagcaagtttacacttc |
11445870 |
T |
|
| Q |
219 |
acttcatatacaca--ctcagaaacacaagacatcacccaagaaaatggatttcattagcaatggcagtgaagaaagtcagctatatcatgctcaaatcc |
316 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11445869 |
acttcatatacacacccttagaaacacaagacatcacccaagaaaatggattccagtagcaatggcagtgaagaaagtcagctatatcatgctcaaatcc |
11445770 |
T |
|
| Q |
317 |
atttatacaaacatatatacagctttataaattccatggcactcaaatctgctgtggaactaggcatagctgatgcaatccacaaccagggaaaaccaat |
416 |
Q |
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|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
11445769 |
atctgtacaaacatatatacagctttataaattccatggcactcaaatctgctgtggaactaggcatagctgatgcaatccacaaccatggaaaaccaat |
11445670 |
T |
|
| Q |
417 |
gactcttactgaattagcctcatct |
441 |
Q |
| |
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|||||||||||||||||| |||||| |
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| T |
11445669 |
gactcttactgaattagcttcatct |
11445645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 19 - 441
Target Start/End: Original strand, 11547021 - 11547445
Alignment:
| Q |
19 |
aaatgcgtgttccaacaataacacacatggtaagaaaaagccaaaatcaaacaatttatgcccaagttagtaaaacacgtgcatcaaaagtatattatat |
118 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11547021 |
aaatgtgtgttccaacaataacacacatggtaagaaaaagccaaaatcaaacaatttatgcccaagttagtaaaacacgtgcatcaaaagtatattatat |
11547120 |
T |
|
| Q |
119 |
gaaagaaataaagatcatgggcataatataaggctatatatacctttgtattctgttctttgttcaaaacatagaagagttgcaagcaagtttacacttc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
11547121 |
gaaagaaataaagatcatgggcataatataaggctatatatacctttgtattgtgttcattgttcaaaacatagaagagttgcaagcaaatttacacttc |
11547220 |
T |
|
| Q |
219 |
acttcatatacaca--ctcagaaacacaagacatcacccaagaaaatggatttcattagcaatggcagtgaagaaagtcagctatatcatgctcaaatcc |
316 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| | |||||||||||||||| |
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|
| T |
11547221 |
acttcatatacacacccttagaaacacaagacatcacccaagaaaatggattccagtagcaatggcagtgaagaaagtcagttttatcatgctcaaatcc |
11547320 |
T |
|
| Q |
317 |
atttatacaaacatatatacagctttataaattccatggcactcaaatctgctgtggaactaggcatagctgatgcaatccacaaccagggaaaaccaat |
416 |
Q |
| |
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|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
11547321 |
atctgtacaaacatatatacagctttataaattccatggcactcaaatctgctgtggaactaggcatagctgatgcaatccacaaccatggaaaaccaat |
11547420 |
T |
|
| Q |
417 |
gactcttactgaattagcctcatct |
441 |
Q |
| |
|
|||||||||||||||||| |||||| |
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|
| T |
11547421 |
gactcttactgaattagcttcatct |
11547445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 253 - 441
Target Start/End: Original strand, 11507026 - 11507214
Alignment:
| Q |
253 |
cccaagaaaatggatttcattagcaatggcagtgaagaaagtcagctatatcatgctcaaatccatttatacaaacatatatacagctttataaattcca |
352 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||| ||| || ||||| |||||||||||| | ||||||||||||||| ||||||||||||||| |
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|
| T |
11507026 |
cccaaaaaaatggatttcagtagcaatggcagtgaagaaaatcaactgtatcacgctcaaatccatctgtacaaacatatatacggctttataaattcca |
11507125 |
T |
|
| Q |
353 |
tggcactcaaatctgctgtggaactaggcatagctgatgcaatccacaaccagggaaaaccaatgactcttactgaattagcctcatct |
441 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
11507126 |
tggcactcaaatcagccgtggaactaggcatagcagatgcaatccaaaaccatggaaaaccaatgactcttactgaattagcttcatct |
11507214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 260 - 441
Target Start/End: Complemental strand, 11468798 - 11468617
Alignment:
| Q |
260 |
aaatggatttcattagcaatggcagtgaagaaagtcagctatatcatgctcaaatccatttatacaaacatatatacagctttataaattccatggcact |
359 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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|
| T |
11468798 |
aaatggatttcaagagcaatggcagtgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtatacagctttataagttccatggcact |
11468699 |
T |
|
| Q |
360 |
caaatctgctgtggaactaggcatagctgatgcaatccacaaccagggaaaaccaatgactcttactgaattagcctcatct |
441 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||| || ||||| || |||||| || ||||||||||||||||| |
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|
| T |
11468698 |
caaatctgctgtggaactaggaatagtagatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatct |
11468617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 260 - 441
Target Start/End: Original strand, 11522663 - 11522844
Alignment:
| Q |
260 |
aaatggatttcattagcaatggcagtgaagaaagtcagctatatcatgctcaaatccatttatacaaacatatatacagctttataaattccatggcact |
359 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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|
| T |
11522663 |
aaatggatttcaagagcaatggcagtgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtatacagctttataagttccatggcact |
11522762 |
T |
|
| Q |
360 |
caaatctgctgtggaactaggcatagctgatgcaatccacaaccagggaaaaccaatgactcttactgaattagcctcatct |
441 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||| || ||||| || |||||| || ||||||||||||||||| |
|
|
| T |
11522763 |
caaatctgctgtggaactaggaatagtagatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatct |
11522844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 285 - 441
Target Start/End: Original strand, 34783870 - 34784026
Alignment:
| Q |
285 |
tgaagaaagtcagctatatcatgctcaaatccatttatacaaacatatatacagctttataaattccatggcactcaaatctgctgtggaactaggcata |
384 |
Q |
| |
|
|||||||||| | || |||||||||||||||||||| ||||||||| |||||| |||| | | |||||||||||||||||| || |||||||||||||| |
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|
| T |
34783870 |
tgaagaaagtgaactgtatcatgctcaaatccatttgtacaaacatgtatacaactttgttagttccatggcactcaaatcagccatggaactaggcata |
34783969 |
T |
|
| Q |
385 |
gctgatgcaatccacaaccagggaaaaccaatgactcttactgaattagcctcatct |
441 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34783970 |
gctgatgcaatccataaccatggaaaaccaatgactctttctgaattagcctcatct |
34784026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 285 - 441
Target Start/End: Original strand, 34775649 - 34775805
Alignment:
| Q |
285 |
tgaagaaagtcagctatatcatgctcaaatccatttatacaaacatatatacagctttataaattccatggcactcaaatctgctgtggaactaggcata |
384 |
Q |
| |
|
|||||||||| | || |||||||||||||||||||| ||||||||| |||||| |||| | | ||||||||| |||||||| || |||||||||||||| |
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|
| T |
34775649 |
tgaagaaagtgaactgtatcatgctcaaatccatttgtacaaacatgtatacaactttgttagttccatggctctcaaatcagccatggaactaggcata |
34775748 |
T |
|
| Q |
385 |
gctgatgcaatccacaaccagggaaaaccaatgactcttactgaattagcctcatct |
441 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
34775749 |
gctgatgcaattcacaaccatggaaaaccaatgactctttctgaactagcctcatct |
34775805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0794 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: scaffold0794
Description:
Target: scaffold0794; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 253 - 441
Target Start/End: Original strand, 1683 - 1871
Alignment:
| Q |
253 |
cccaagaaaatggatttcattagcaatggcagtgaagaaagtcagctatatcatgctcaaatccatttatacaaacatatatacagctttataaattcca |
352 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||| ||| || ||||| |||||||||||| | ||||||||||||||| ||||||||||||||| |
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|
| T |
1683 |
cccaaaaaaatggatttcagtagcaatggcagtgaagaaaatcaactgtatcacgctcaaatccatctgtacaaacatatatacggctttataaattcca |
1782 |
T |
|
| Q |
353 |
tggcactcaaatctgctgtggaactaggcatagctgatgcaatccacaaccagggaaaaccaatgactcttactgaattagcctcatct |
441 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1783 |
tggcactcaaatcagccgtggaactaggcatagcagatgcaatccaaaaccatggaaaaccaatgactcttactgaattagcttcatct |
1871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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