View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8500_low_12 (Length: 437)
Name: NF8500_low_12
Description: NF8500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8500_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 5 - 419
Target Start/End: Complemental strand, 31407878 - 31407463
Alignment:
| Q |
5 |
ggattttatccattgttttaaaaattagaccggagatcagatgaatgagacttaaaggatcacggattaacttattcaatgagttcctagggatgaacaa |
104 |
Q |
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| T |
31407878 |
ggattttattcattgttttaaaaattagaccggagatcaaatgaatgagacttaaagggtcacggattaacttattcaatgagttcctagggatgaacaa |
31407779 |
T |
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| Q |
105 |
tatttcttgtgga------gaaacgagcaaatgaactgtttgaatcacaatataatgaaattgaaaccaagattatgtgaaagtgatatttgattttgtc |
198 |
Q |
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| T |
31407778 |
tatttcttgtggacttatagaaacgagcaaatgaactgtt-----cacaatatgatgaaattgaaaccaagattatgtgaaagtgatatttgattgtgtg |
31407684 |
T |
|
| Q |
199 |
aattgatgtgtgtcatgcaggttgtgcgtaagccagcacatcatttcttggacgagcttgaaattgagtatgacgaacaggacgactatgtagtgatcaa |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31407683 |
aattgatgtgtgtcatgcaggttgtgcgtaagccagcacatcatttcttggacgagcttgaaattgagtatgatgaacaggacgactatgtagtgatcaa |
31407584 |
T |
|
| Q |
299 |
gcacgctgctctcttcacttccacaatcatgagcaagctactagcaaggccaaacgtgaagcttttcaatgctgtagctgctgaggatttgattgtgaag |
398 |
Q |
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| T |
31407583 |
gcatgctgctctcttcacttccaccatcatgagcaagctactagcaaggccaaacgtgaagcttttcaatgctgtagctgctgaggatttgattgtgaag |
31407484 |
T |
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| Q |
399 |
aatggaagagttggcggtgtt |
419 |
Q |
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| T |
31407483 |
aatgaaagagttggtggtgtt |
31407463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 262 - 398
Target Start/End: Complemental strand, 47481722 - 47481586
Alignment:
| Q |
262 |
ttgagtatgacgaacaggacgactatgtagtgatcaagcacgctgctctcttcacttccacaatcatgagcaagctactagcaaggccaaacgtgaagct |
361 |
Q |
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|||| ||||||||||| || ||||| || || ||||| ||||||||||| |||||||| || |||||||||||||| || |||| || || || || || |
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| T |
47481722 |
ttgaatatgacgaacaagaagactacgttgtcatcaaacacgctgctctattcacttcaaccatcatgagcaagcttcttgcaaaacctaatgtaaaact |
47481623 |
T |
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| Q |
362 |
tttcaatgctgtagctgctgaggatttgattgtgaag |
398 |
Q |
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| T |
47481622 |
tttcaatgctgttgctgctgaggatttgattgtgaag |
47481586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 294 - 335
Target Start/End: Original strand, 4220543 - 4220584
Alignment:
| Q |
294 |
atcaagcacgctgctctcttcacttccacaatcatgagcaag |
335 |
Q |
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| T |
4220543 |
atcaagcacgctgctctcttaacttccacaatcatgagcaag |
4220584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 4220463 - 4220500
Alignment:
| Q |
71 |
ttaacttattcaatgagttcctagggatgaacaatatt |
108 |
Q |
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| T |
4220463 |
ttaacttattcaatgagttcatagggatgaacaatatt |
4220500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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