View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8500_low_13 (Length: 413)
Name: NF8500_low_13
Description: NF8500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8500_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 133 - 378
Target Start/End: Complemental strand, 44130165 - 44129920
Alignment:
| Q |
133 |
catcatcaaatgattggtgatgtcacttatggtggcttctgtgatgcatgttgcagaccgtttgcaacattaagggtagagtattgaattattttgaaga |
232 |
Q |
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| T |
44130165 |
catcatcaaatgattggtgatgtcacttatggtggattctgtgatgcatgttgcagaccgtttgcaacattaagggtagagtattgaattattttgaaga |
44130066 |
T |
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| Q |
233 |
ttgcagtggtgacatcatgttcttgtattaaaggtgttaaggtggtcaggttcatgtgagttttcataagggcgtggattgtattttaatacaggatgct |
332 |
Q |
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| T |
44130065 |
ttgcagtggtgacatcatgttcttgtattaaaggtgttaaggtggtcaggttcatgtgagttttcataagggcgtggattgtattttaatacaggatgct |
44129966 |
T |
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| Q |
333 |
ggtttttctttatgatgtcggcagtggtgtggttgtatggatttag |
378 |
Q |
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| T |
44129965 |
ggtttttctttatgatgccggcagtggtgtgtttggatggatttag |
44129920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 126 - 358
Target Start/End: Complemental strand, 44142800 - 44142558
Alignment:
| Q |
126 |
tcattatcatcatcaaatgattggtgatgtcacttatggtggcttctgtgatgcatgttgcagaccgtttgcaacattaagggtagagtattgaattatt |
225 |
Q |
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| T |
44142800 |
tcatcatcatcatcaaatgattgttgatgtcgcttacagtggcttctgttatgcatgttgcagaccgttggcaacattaggggtagagtattgaattgtt |
44142701 |
T |
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| Q |
226 |
ttgaagattgcagtggtgacatca----------tgttcttgtattaaaggtgttaaggtggtcaggttcatgtgagttttcataagggcgtggattgta |
315 |
Q |
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| T |
44142700 |
ttgaagattgcagtggtgacatcatgaattgatgtgttcttgcattcaaggtgtaaaggtggtcaagttcatgtaaattttcatatgggtgtggattgca |
44142601 |
T |
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| Q |
316 |
ttttaatacaggatgctggtttttctttatgatgtcggcagtg |
358 |
Q |
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| T |
44142600 |
tttcaatcaaggatgctggtttttctttatgatgcaggcagtg |
44142558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 158 - 363
Target Start/End: Complemental strand, 44134334 - 44134119
Alignment:
| Q |
158 |
cttatggtggcttctgtgatgcatgttgcagaccgtttgcaacattaagggtagagtattgaattattttgaagattgcagtggtgacatca-------- |
249 |
Q |
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| T |
44134334 |
cttacggtggcttctgttatgcatgtttaggaccgtttgcaacattaggggtagagtgttgaattgttttgaagattgcagtggtgatatcatgaattgg |
44134235 |
T |
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| Q |
250 |
--tgttcttgtattaaaggtgttaaggtggtcaggttcatgtgagttttcataagggcgtggattgtattttaatacaggatgctggtttttctttatga |
347 |
Q |
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| T |
44134234 |
tgtgttcttgtattcaaggtgtaaatttggacaagttcatgtgaattttcataagggtgtggattgcatttcaatcaaggatgctggtttttctttatgt |
44134135 |
T |
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| Q |
348 |
tgtcggcagtggtgtg |
363 |
Q |
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| T |
44134134 |
tgcaggcagtggtgtg |
44134119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 44142910 - 44142841
Alignment:
| Q |
31 |
cctgcataaacttggcctcgttatccttcagcacgttctcgaaaaagtgttcaagcctgactgatctctc |
100 |
Q |
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| T |
44142910 |
cctgcataaacttggccctattatccttcagcgcgttctcaaaaaagtgttcaagcctgaccaatctctc |
44142841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 119
Target Start/End: Complemental strand, 44134439 - 44134354
Alignment:
| Q |
31 |
cctgcataaacttggcctcgttatccttcagcacgttctcgaaaaagtgttcaagcctgactgatctctccgatattttttcaagccga |
119 |
Q |
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| T |
44134439 |
cctgcataaacttgac-tcattatccttcagca--ttctcgaaaaagtgttcaagcctgaccaatctcttcaattcttcttcaagccga |
44134354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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