View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8500_low_14 (Length: 412)
Name: NF8500_low_14
Description: NF8500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8500_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 51 - 397
Target Start/End: Complemental strand, 1169977 - 1169627
Alignment:
| Q |
51 |
aggacattctcttgaaacaccacatttttctaaatgctttgatcatttatgtgctatgcttagaattttatcactttatccaaacaaatgaatttgaata |
150 |
Q |
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| T |
1169977 |
aggacattctcttgaaacaccatatttttctaaatgctttgatgatttatgtgctatgcttagaattttatcactttatccaaacaaatgaatttgaata |
1169878 |
T |
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| Q |
151 |
atcagaataaattaaaacatttgaattgcctaaaactttaattaattcatccaaacatactctaaggtattacttgaaaaatgaagaaggaaagtaaggg |
250 |
Q |
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| T |
1169877 |
atgagaataaattaaaacatttgaattgcctaaaactttaattaattcatccaaacacactctaaggtattacttgaaaaatgaagaaggaaagtaaggg |
1169778 |
T |
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| Q |
251 |
aagaatttgaaggaagggtgagagaaattgca--nnnnnnnnngggattgttttcgaaggaaataaaaggaaggaaaagaaaaatcatcagggttgactt |
348 |
Q |
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| T |
1169777 |
aagaatttgaaggaagggtgagagaaattgcatttttttttttgggattgttttcgaaggaaataaaaggaaggaaaagaaaaatcatcagggttgagtt |
1169678 |
T |
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| Q |
349 |
tagtgaaatggactac--atttccacaacttatcgaatcaatgttcaaatt |
397 |
Q |
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| T |
1169677 |
tagtgaaatggactacatatttccacaacttatcgaatcaatgttcaaatt |
1169627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 282
Target Start/End: Complemental strand, 1162902 - 1162829
Alignment:
| Q |
209 |
actctaaggtattacttgaaaaatgaagaaggaaagtaagggaagaatttgaaggaagggtgagagaaattgca |
282 |
Q |
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| T |
1162902 |
actccaaggtattatttgaaaaatgaagagggtaagtaaaggaaggatttgataagaggatgagagaaattgca |
1162829 |
T |
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