View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8500_low_15 (Length: 399)
Name: NF8500_low_15
Description: NF8500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8500_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 385
Target Start/End: Complemental strand, 13776315 - 13775949
Alignment:
| Q |
19 |
gaaaaagcccctcactttctcattcctagttatgaatgttgtgcgtgaatatttgagctaattacttaatttgtctttgcaaattgcaaccaagaaagac |
118 |
Q |
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| T |
13776315 |
gaaaaagcccctcactttctcattcctagttatgaatgttgtgcgtgaatatttgagctaattacttaatttgtctttgcaaattgcaactatgaaagac |
13776216 |
T |
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| Q |
119 |
aaaacaaacaaattaagatgcatagctctactctgattgacaataaaaaatcctagtcctagttatgctaatcttaaattttccagaaacatgttggcag |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
13776215 |
aaaacaaacaaattaagatgcatagctctactctgattgacaataaaaaatcctagtcctagttatgataatcttaaattttccagaaacatgttggcag |
13776116 |
T |
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| Q |
219 |
aatcacatgaagtgagttacacgtggtatcaagtaattgcatgcatgatatccgccaccatcacgtgtccactaaataaagacattgagttatctcaccc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13776115 |
aatcacatgaagtgagttacacgtggtatcaagtaattgcatgcatgatatccgccaccatcacgtgtccactaaataaagacattgagttatctcaccc |
13776016 |
T |
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| Q |
319 |
ttaccatttcaagccatcacacgtcatcattacacgtggtgaaagatggtagtatcattccacagta |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
13776015 |
ttaccatttcaagccatcacacgtcatcattacacgtggtgaaagatggtagtagcattccacagta |
13775949 |
T |
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