View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8500_low_16 (Length: 385)
Name: NF8500_low_16
Description: NF8500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8500_low_16 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 17 - 385
Target Start/End: Complemental strand, 35747129 - 35746760
Alignment:
| Q |
17 |
acaggttgaggtaagattacttacacaaagcagtatctgttaattcgagaccaatagtatccttgaagaactcaacagttggacgataggaaaaatacag |
116 |
Q |
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| T |
35747129 |
acaggttgaggtaagattacttacacaaagcagtatctgttaattcgagaccaatagtatccttgaagaactcaacagttggacgataggaaaaatacag |
35747030 |
T |
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| Q |
117 |
tgcaacgacttttactacattaagagctttatcatgccaaaaaggcagaccctgcatcaagtgattcaggttggacaccagtttgaaacataccg-aaca |
215 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35747029 |
tgcaacgacttttactgcattaagagctttatcatgccaaaaaggcagaccctgcatcaagtgattcaggttggacaccagtttgaaacataccgaaaca |
35746930 |
T |
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| Q |
216 |
aaggataaataacataaccagaaccaaagccagcctaaaatatcaaaataaacaatcgacaaagcaaatcgaggatgattaagaaagcaaagcaagtagg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35746929 |
aaggataaataacataaccagaaccaaagccagcctaaaatatcaaaataaacaatcgacaaagcaaatcgaggatgattaagaaagcaaagcaagtagg |
35746830 |
T |
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| Q |
316 |
taagaattgaaaaaaccttgtcggcggcagcagcaacacccttattcataggcacggtggatgggaaaat |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35746829 |
taagaattgaaaaaaccttgtcggcggcagcagcaacacccttattcatagacacggtggatgggaaaat |
35746760 |
T |
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