View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8500_low_17 (Length: 370)
Name: NF8500_low_17
Description: NF8500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8500_low_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 14178704 - 14179056
Alignment:
| Q |
1 |
tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14178704 |
tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaa |
14178803 |
T |
|
| Q |
101 |
gtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14178804 |
gtaggtctcacgggaaacactatattgtatctcttgtgtgtgt--gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgga |
14178901 |
T |
|
| Q |
201 |
gtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca---nnnnnnnngctaccgctgtgctgcaagatccaatct |
297 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||| |
|
|
| T |
14178902 |
gtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcattttttttattgctaccgctgcgctgcaagatccagtct |
14179001 |
T |
|
| Q |
298 |
cttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14179002 |
cttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
14179056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 14173950 - 14174302
Alignment:
| Q |
1 |
tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14173950 |
tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaa |
14174049 |
T |
|
| Q |
101 |
gtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14174050 |
gtaggtctcacgggaaacactatattgtatctcttgtgtgtgt--gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgga |
14174147 |
T |
|
| Q |
201 |
gtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca---nnnnnnnngctaccgctgtgctgcaagatccaatct |
297 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||| |
|
|
| T |
14174148 |
gtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcattttttttatcactaccgctgcgctgcaagatccagtct |
14174247 |
T |
|
| Q |
298 |
cttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14174248 |
cttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
14174302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 28611920 - 28611568
Alignment:
| Q |
1 |
tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28611920 |
tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaa |
28611821 |
T |
|
| Q |
101 |
gtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611820 |
gtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgag--agagtggagagaatattgtaatattctttaatatagtggaatatttttcgga |
28611723 |
T |
|
| Q |
201 |
gtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca---nnnnnnnngctaccgctgtgctgcaagatccaatct |
297 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||| ||| |
|
|
| T |
28611722 |
gtttgtcccgtggtttttccctcggtattagagggtttttcacgttaaatattggtgttcattttttttatcgctaccgctgcgctgcaagatccagtct |
28611623 |
T |
|
| Q |
298 |
cttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611622 |
cttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
28611568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 28607158 - 28606806
Alignment:
| Q |
1 |
tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28607158 |
tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaa |
28607059 |
T |
|
| Q |
101 |
gtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607058 |
gtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgag--agagtggagagaatattgtaatattctttaatatagtggaatatttttcgga |
28606961 |
T |
|
| Q |
201 |
gtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca---nnnnnnnngctaccgctgtgctgcaagatccaatct |
297 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||| | |||||||||| ||||||||||||| ||| |
|
|
| T |
28606960 |
gtttgtcccgtggtttttccctcggtattagagggtttttcacgttaaatattggtgttaattttttttatcgctaccgctgcgctgcaagatccagtct |
28606861 |
T |
|
| Q |
298 |
cttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28606860 |
cttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
28606806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 44161599 - 44161950
Alignment:
| Q |
1 |
tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
44161599 |
tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaa |
44161698 |
T |
|
| Q |
101 |
gtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgga |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44161699 |
gtaggtcttacgggaaacactatattgtatctcttgtgtgtgt--aagagagtggagaga--attgtaatattctttaatatagtggaatatttttcgga |
44161794 |
T |
|
| Q |
201 |
gtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca---nnnnnnnngctaccgctgtgctgcaagatccaatct |
297 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
44161795 |
gtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcattttttttatcgctaccgctgcgctgcaagatccaatct |
44161894 |
T |
|
| Q |
298 |
cttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacat |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44161895 |
cttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacat |
44161950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 11104482 - 11104830
Alignment:
| Q |
1 |
tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||| |||||| | |
|
|
| T |
11104482 |
tagagtgttgagtaaatccagagagtgtaggaaaaatacaccgggtggatatcatctctataacttctaggtgttataaaataatagcatttgaatagga |
11104581 |
T |
|
| Q |
101 |
gtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgga |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
11104582 |
gtgggtctcacgggaaacactatattgtatctctt---tgtgtgtaagagagtggagagaatattgtaatattcttagatatggtggaatatttttcgga |
11104678 |
T |
|
| Q |
201 |
gtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttcannnnnnnngctaccgctgtgctgcaagatccaatctctt |
300 |
Q |
| |
|
|||||||||||||| || ||||| ||||||||| ||||| | |||||||||||||||||| ||||| |||| |||||||||||||||||||| |
|
|
| T |
11104679 |
gtttgtcccgtggt-ttaccctcgatattagaggattttctatgttaaatattggtgttcatttttatcgctacagctgcgctgcaagatccaatctctt |
11104777 |
T |
|
| Q |
301 |
ttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacat |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11104778 |
ttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacat |
11104830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 50 - 352
Target Start/End: Complemental strand, 48827000 - 48826702
Alignment:
| Q |
50 |
tatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagaga |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
48827000 |
tatcatctctataacttctaggtgctataaaataatagcattcaaataggagtgaatctcacgggaaacactatattgtatctcttgtgtgtgt--aaga |
48826903 |
T |
|
| Q |
150 |
gagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaa |
249 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||| |||||||||| |||||||||||||| |
|
|
| T |
48826902 |
gagcgaagagaatattgtaatattctttaatatagtggaatatttttcggag-ttgtcccgtgatttttccctcggtattagaggattttccacgttaaa |
48826804 |
T |
|
| Q |
250 |
tattggtgttc-annnnnnnngctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagccc |
348 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||| ||| |||||| |||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
48826803 |
tattggtgttctttttctatcgctaccgctgcgctgcaagatccaatctc--ttgaattttgaaattttaatttacaattgcgttaagctcgtcgatccc |
48826706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 155 - 325
Target Start/End: Complemental strand, 48708256 - 48708086
Alignment:
| Q |
155 |
gagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattg |
254 |
Q |
| |
|
||||||||||||||||||| ||||||||| || ||||||||| |||||||||| |||||| |||| || ||||||| || ||||| || ||||||||||| |
|
|
| T |
48708256 |
gagagaatattgtaatattttttaatataatgaaatattttttggagtttgtcacgtggtttttctcttagtattatagagtttttcatgttaaatattg |
48708157 |
T |
|
| Q |
255 |
gtgttcannnnnnnngctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttaca |
325 |
Q |
| |
|
|| || | || ||| ||| | || ||||| |||| |||||| ||||||||||||||||||||| |
|
|
| T |
48708156 |
gtatttaattttatcgccaccactgcgttgtaagattcaatttcttttatattttggaattttaatttaca |
48708086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 240
Target Start/End: Complemental strand, 24726442 - 24726288
Alignment:
| Q |
81 |
ataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaat |
180 |
Q |
| |
|
|||||| |||| |||||| ||| |||||||||| ||||| |||| |||||||| ||| || ||||| ||||||||||||| | || ||||||||| |
|
|
| T |
24726442 |
ataataacatttgaataggagt-ggtctcacggaaaacaatatagtgtatctcgtgtcggta----agagaatggagagaatattattatgttctttaat |
24726348 |
T |
|
| Q |
181 |
atagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttc |
240 |
Q |
| |
|
||| ||||||||||||| ||||||||| ||||| ||||||| ||||||| ||||||| |
|
|
| T |
24726347 |
ataatggaatatttttcagagtttgtctcgtggcttttcccttgatattagatggttttc |
24726288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 12930689 - 12931040
Alignment:
| Q |
1 |
tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
12930689 |
tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaataaaa |
12930788 |
T |
|
| Q |
101 |
gtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12930789 |
gtaggtctcacgggaaacactatattgtatctcttgtgtgtgt--gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgga |
12930886 |
T |
|
| Q |
201 |
gtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca--nnnnnnnngctaccgctgtgctgcaagatccaatctc |
298 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||| |
|
|
| T |
12930887 |
gtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcatttttttatcgctaccgctgcgctgcaagatccagtctc |
12930986 |
T |
|
| Q |
299 |
ttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12930987 |
ttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
12931040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 12935435 - 12935786
Alignment:
| Q |
1 |
tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || || |
|
|
| T |
12935435 |
tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagagtaaaa |
12935534 |
T |
|
| Q |
101 |
gtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12935535 |
gtaggtctcacgggaaacactatattgtatctcttgtgtgtgt--gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgga |
12935632 |
T |
|
| Q |
201 |
gtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca--nnnnnnnngctaccgctgtgctgcaagatccaatctc |
298 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| | || |
|
|
| T |
12935633 |
gtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcatttttttatcgctaccgctgcgctgcaagatccagtttc |
12935732 |
T |
|
| Q |
299 |
ttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
352 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12935733 |
ttttgaattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
12935786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 139 - 259
Target Start/End: Complemental strand, 26505063 - 26504945
Alignment:
| Q |
139 |
tgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttt |
238 |
Q |
| |
|
||||||| ||||||| || |||||||||||||||| |||| |||||| |||||||||| ||||||||| | ||||| ||| ||| ||||||| ||| | |
|
|
| T |
26505063 |
tgtgtgaaagagagttgaaagaatattgtaatattttttattatagttgaatattttttggagtttgtactgtggt-tttgccttgttattagacggtat |
26504965 |
T |
|
| Q |
239 |
tccacgttaaatattggtgtt |
259 |
Q |
| |
|
| |||||||||||||| |||| |
|
|
| T |
26504964 |
t-cacgttaaatattgatgtt |
26504945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 261
Target Start/End: Original strand, 15588948 - 15589060
Alignment:
| Q |
149 |
agagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaa |
248 |
Q |
| |
|
|||||||||| ||| |||||||||| ||| ||| |||| ||||||||| ||||||||| | || | |||| |||| || ||||||||||| || ||| |
|
|
| T |
15588948 |
agagtggagaaaatgttgtaatattgtttgataaagtgaaatattttttagagtttgtcacttgatttttctctcattaatagagggtttttcaaaataa |
15589047 |
T |
|
| Q |
249 |
atattggtgttca |
261 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
15589048 |
atattgatgttca |
15589060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 344
Target Start/End: Complemental strand, 26504895 - 26504850
Alignment:
| Q |
299 |
ttttggattttggaattttaatttacacttgcgttaagctcgtcga |
344 |
Q |
| |
|
|||||||||||| ||||||||||||||||| | |||| |||||||| |
|
|
| T |
26504895 |
ttttggattttgaaattttaatttacacttccattaaactcgtcga |
26504850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 34907152 - 34907503
Alignment:
| Q |
1 |
tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
34907152 |
tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaataaaa |
34907251 |
T |
|
| Q |
101 |
gtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34907252 |
gtaggtctcacgggaaacactatattgtatctcttgtgtgtgt--gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgga |
34907349 |
T |
|
| Q |
201 |
gtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca--nnnnnnnngctaccgctgtgctgcaagatccaatctc |
298 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||| |
|
|
| T |
34907350 |
gtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcatttttttatcgctaccgctgcgctgcaagatccagtctc |
34907449 |
T |
|
| Q |
299 |
ttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34907450 |
ttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
34907503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 37040778 - 37040426
Alignment:
| Q |
1 |
tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37040778 |
tagagtgttgagtaaatccagagagtgtgggaaaaatacatcgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaa |
37040679 |
T |
|
| Q |
101 |
gtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgga |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37040678 |
gtaggtctcacggaaaacactatattgtatctcttgtgtgtgtgag--agagtggagaaaatattgtaatattctttaatatagtggaatatttttcgga |
37040581 |
T |
|
| Q |
201 |
gtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca---nnnnnnnngctaccgctgtgctgcaagatccaatct |
297 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||| |
|
|
| T |
37040580 |
gtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcattttttttatcgctaccgctgcgctgcaagatccagtct |
37040481 |
T |
|
| Q |
298 |
cttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37040480 |
tttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
37040426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 15290245 - 15290594
Alignment:
| Q |
1 |
tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaa |
100 |
Q |
| |
|
||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||| | |
|
|
| T |
15290245 |
tagagtgttgactaaatccagaaagtgtgg-aaaaatacaccgggtgggtatcatctctataacttctaggtgctgaaata--atagcattcgaatagga |
15290341 |
T |
|
| Q |
101 |
gtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgga |
200 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||| || ||| ||| |
|
|
| T |
15290342 |
gtgggtctcacgg-aaacactatattgtatctcttgtgtgtgtaagag--agtggagagaatattgtaatattcttaaatatagtggaaaatcttttgga |
15290438 |
T |
|
| Q |
201 |
gtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca---nnnnnnnngctaccgctgtgctgcaagatccaatct |
297 |
Q |
| |
|
|||||||||||||| | | |||| ||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||| |
|
|
| T |
15290439 |
gtttgtcccgtggtttatacctcggtattagagggttttccacgttaaatattggtgttcattttttttatcgctaaggctgcgctgcaagatccaatct |
15290538 |
T |
|
| Q |
298 |
c-ttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
352 |
Q |
| |
|
| |||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
15290539 |
ctttttggattttgaaattttaatttacaattgcgttaagctcgtcgagcccaaca |
15290594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 49 - 353
Target Start/End: Original strand, 12099060 - 12099362
Alignment:
| Q |
49 |
gtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagag |
148 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| |||||| |||| |||||| ||| ||||||| ||||||| ||||||| ||||||||| |||| |||| |
|
|
| T |
12099060 |
gtatcatctctataacttttaggtgttataaaataatatcatttgaataggagtgagtctcactagaaacacaatattgtgtctcttgtgcgtgtaagag |
12099159 |
T |
|
| Q |
149 |
agagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaa |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||| ||||| || ||||||||||||| ||||| || |
|
|
| T |
12099160 |
--agtggagagaatattgtaatattctttaatatagttgaaattttttcggagtttgtcccttggtttttccttcgtcattagagggtttttcacgtaaa |
12099257 |
T |
|
| Q |
249 |
atattggtgttcannnnnnnngctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagccc |
348 |
Q |
| |
|
|||||| | |||| |||| || || ||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
12099258 |
atattgcttttcatttttatcgctatcggtgagctgcaagatcatatctcttttggattttggaattttaatttacactcgcgttaaactcgtcgagccc |
12099357 |
T |
|
| Q |
349 |
aacat |
353 |
Q |
| |
|
||||| |
|
|
| T |
12099358 |
aacat |
12099362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 12082028 - 12082227
Alignment:
| Q |
1 |
tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaa |
100 |
Q |
| |
|
|||||||||| ||||||||||| | | |||||||||| | ||||| ||||| |||||||||||||||||| ||||||| |||||| |||| |||||| | |
|
|
| T |
12082028 |
tagagtgttgggtaaatccagaaaaag-gggaaaaatatatcgggtaggtattatctctataacttctaggcgctataaaataataacatttgaatagga |
12082126 |
T |
|
| Q |
101 |
gtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgga |
200 |
Q |
| |
|
| |||||| |||||||||||||||||||||| | |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
12082127 |
gcgagtctcattagaaacactatattgtatctcttttccgtgt--aagagagtggagaaaatattgtaatattc-ttaatatagtggaatattttttgga |
12082223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 115 - 195
Target Start/End: Complemental strand, 2757448 - 2757370
Alignment:
| Q |
115 |
aaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttt |
195 |
Q |
| |
|
|||||||||||||||||||||| ||||| | ||||||||||||||||| || |||||| || |||||||||||||||||| |
|
|
| T |
2757448 |
aaacactatattgtatctcttgagtgtg--aaagagagtggagagaatagtgcaatatttttaaatatagtggaatatttt |
2757370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 270 - 353
Target Start/End: Original strand, 12084669 - 12084752
Alignment:
| Q |
270 |
gctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacat |
353 |
Q |
| |
|
||||||| || ||| ||||||||||| ||| |||||||||| ||||||||||||| || | ||||||||||| ||||||||||| |
|
|
| T |
12084669 |
gctaccgttgcgctacaagatccaatgtctattggattttgaaattttaatttaccctcgtgttaagctcgttgagcccaacat |
12084752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 329
Target Start/End: Complemental strand, 2757273 - 2757236
Alignment:
| Q |
292 |
caatctcttttggattttggaattttaatttacacttg |
329 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
2757273 |
caatttcttttgaattttggaattttaatttacacttg |
2757236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 4 - 353
Target Start/End: Complemental strand, 29107224 - 29106877
Alignment:
| Q |
4 |
agtgttgagtaaatccagagagtgtgggaaaaatacaccgggtggg-tatcatctctataacttctaggtgctataatataatagcattagaatagaagt |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
29107224 |
agtgttgagtaaatccagagagtgtgggaaaaatacattgggtggggtatcatctttataacttctaggtgctaaaaaataatagcattagaatagaagt |
29107125 |
T |
|
| Q |
103 |
aggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagt |
202 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29107124 |
aggtctcacgggaaacactat-ttgtatctcttgtgtgtgtaagagag--tggagagaatattgtaatattctttaatatagtggaatatttttcggagt |
29107028 |
T |
|
| Q |
203 |
ttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttcannnnnnnngctaccgctgtgctgcaagatccaatctctttt |
302 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| |
|
|
| T |
29107027 |
ttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcatttttaacgctaccgctgcgctgcaagatccaatctttttt |
29106928 |
T |
|
| Q |
303 |
ggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacat |
353 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||| |||||||| |
|
|
| T |
29106927 |
ggattttggaattttaatttacacttgcattaagctcctcgatcccaacat |
29106877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 42911341 - 42910993
Alignment:
| Q |
1 |
tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
42911341 |
tagagtgttgagtaaatccagagagtgtggaaaaaatacactgggtgggtatcatctctataacttcttggtgctataaaataatagcattagaatagaa |
42911242 |
T |
|
| Q |
101 |
gtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgga |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
42911241 |
gtaggtctcaagggaaacactatattgtatcttttgtgtgtgtgag--agagtggagagaatattgtaatattcttaaatatagtggaata-ttttcgga |
42911145 |
T |
|
| Q |
201 |
gtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttcannnnnnnngctaccgctgtgctgcaagatccaatctctt |
300 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||| | | |||||| ||||||||||| |||||||| |
|
|
| T |
42911144 |
gtttgtcccgtggtttttccctcggtattagagggttttccatgttaaatattggtgttcatttttatcgttgccgctgcgctgcaagatctaatctctt |
42911045 |
T |
|
| Q |
301 |
ttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
352 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42911044 |
ttggattttaaaattttaatttccacttgcgttaagctcgtcgagcccaaca |
42910993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 260
Target Start/End: Complemental strand, 38997320 - 38997230
Alignment:
| Q |
170 |
tattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttc |
260 |
Q |
| |
|
|||||||||||||| |||| ||||||| |||||||||||||| || |||| || ||||||||||||||| |||| |||||||| ||||| |
|
|
| T |
38997320 |
tattctttaatataatggattattttttggagtttgtcccgtagtttttcgttcgatattagagggttttcgacgtaaaatattgctgttc |
38997230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 272 - 352
Target Start/End: Complemental strand, 38994779 - 38994699
Alignment:
| Q |
272 |
taccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
352 |
Q |
| |
|
|||||||| |||||||||||||| | ||||| |||||||||||||||||||||| || ||||| ||||| ||||||||| |
|
|
| T |
38994779 |
taccgctgcactgcaagatccaattttgtttgggttttggaattttaatttacactagcattaagatcgtcaagcccaaca |
38994699 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 4 - 352
Target Start/End: Original strand, 8539199 - 8539548
Alignment:
| Q |
4 |
agtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagta |
103 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||| ||| ||||||||| | |||||| ||| |
|
|
| T |
8539199 |
agtgttcagtaaattcagagagtgtgggaaaaatacatcggatgggtatcatctctataacttttaggtgctgtaaaataatagcaatcgaataggagtg |
8539298 |
T |
|
| Q |
104 |
ggtctcacgggaaacactata---ttgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgga |
200 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||| |||| |||||||| ||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
8539299 |
ggtctcacgg-aaacactataatattgtatctcttgtgtgtgtaagag--agtggagataatattgtaatattcttaaatatagtggaatatctttcgga |
8539395 |
T |
|
| Q |
201 |
gtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca-nnnnnnnngctaccgctgtgctgcaagatccaatctct |
299 |
Q |
| |
|
|||||||||||| | |||||||| |||||||||||||||||||||||||||||| |||||| | |||||||| ||||||||||||||||||| |
|
|
| T |
8539396 |
gtttgtcccgtgatttttccctcggtattagagggttttccacgttaaatattgatgttcattttttattgttaccgctgcgctgcaagatccaatctct |
8539495 |
T |
|
| Q |
300 |
tttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
352 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8539496 |
tttagaatttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
8539548 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 51302174 - 51302306
Alignment:
| Q |
1 |
tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaa |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| | ||| ||||| |||||| | |
|
|
| T |
51302174 |
tagagtattgagtaaatccagagagtgtggataaaatacaccgggtgggaatcatctctataacttctaggtgctataaaacaattgcattcgaatagga |
51302273 |
T |
|
| Q |
101 |
gtaggtctcacgggaaacactatattgtatctc |
133 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |
|
|
| T |
51302274 |
gtgggtctcacgggaaacactatattgtatctc |
51302306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 270 - 352
Target Start/End: Original strand, 51302937 - 51303019
Alignment:
| Q |
270 |
gctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
352 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
51302937 |
gctaccgctgcgctgcaagatccaatctgttttggattttgaaattttaatttacacttgcattaagctcgtcgatcccaaca |
51303019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 225 - 261
Target Start/End: Original strand, 51302308 - 51302344
Alignment:
| Q |
225 |
gtattagagggttttccacgttaaatattggtgttca |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51302308 |
gtattagagggttttccacgttaaatattggtgttca |
51302344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 170 - 353
Target Start/End: Complemental strand, 2100379 - 2100198
Alignment:
| Q |
170 |
tattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttcannnnnnnn |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| || |||| |||| ||||| |||||||||||| |||||||||| |||||| |
|
|
| T |
2100379 |
tattctttaatatagtggaatatttttcggagtttgcccc---gtttttcgctcattattaaagggttttccaccttaaatattgatgttcaattttatc |
2100283 |
T |
|
| Q |
270 |
gctaccgctgtgctgcaaga-tccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacat |
353 |
Q |
| |
|
|| || |||||||||| | || |||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2100282 |
attatcgttgtgctgcaaaattcaaatctcttatgaattttggaattttaatttacacttgtgttaagctcgtcgagcccaacat |
2100198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 177
Target Start/End: Complemental strand, 2100771 - 2100723
Alignment:
| Q |
127 |
gtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattcttt |
177 |
Q |
| |
|
||||||||||||| ||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
2100771 |
gtatctcttgtgtatgtaagagag--tggagagaatattgtaatattcttt |
2100723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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