View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8500_low_19 (Length: 332)
Name: NF8500_low_19
Description: NF8500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8500_low_19 |
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| [»] scaffold0493 (1 HSPs) |
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Alignment Details
Target: scaffold0493 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0493
Description:
Target: scaffold0493; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 118 - 316
Target Start/End: Original strand, 7538 - 7735
Alignment:
| Q |
118 |
gttgtttcggacaaccatgtagctaaattcgtgatagttgttaatttgtcattttagcttccaccaacgtaaaaatctaatcaagtccacggtcagtatt |
217 |
Q |
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| T |
7538 |
gttgtttcggacaaccatgtagctaaattcgtgatagttgttaatttgtcattttagcttccaccaacgtaagaatctaatcaagtccacggtcagtatt |
7637 |
T |
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| Q |
218 |
ttctgctatacttccattccgtggttttttattaaccttaaaaccttttcattatatcattgttcaatttttcattcttgaaattctgcatcctctaat |
316 |
Q |
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| T |
7638 |
ttctgctatacttccattccgtggttttttattaacctt-aaaccttgtcattatatcattgttcaattttttattcttgaaattctgcatcctctaat |
7735 |
T |
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