View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8500_low_2 (Length: 720)

Name: NF8500_low_2
Description: NF8500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8500_low_2
NF8500_low_2
[»] chr8 (26 HSPs)
chr8 (364-710)||(37736346-37736692)
chr8 (198-335)||(7577050-7577187)
chr8 (198-335)||(7577590-7577727)
chr8 (198-335)||(27704532-27704669)
chr8 (198-337)||(27703993-27704132)
chr8 (198-291)||(37577732-37577825)
chr8 (198-332)||(37577268-37577402)
chr8 (250-335)||(34366846-34366930)
chr8 (225-338)||(39601635-39601751)
chr8 (274-335)||(44052304-44052365)
chr8 (273-335)||(41250148-41250210)
chr8 (275-336)||(39604398-39604459)
chr8 (262-335)||(39939281-39939354)
chr8 (274-335)||(43262359-43262420)
chr8 (200-249)||(12715722-12715771)
chr8 (291-335)||(28694513-28694557)
chr8 (255-335)||(35966808-35966888)
chr8 (225-268)||(3695371-3695414)
chr8 (228-271)||(25994447-25994490)
chr8 (225-268)||(30026260-30026303)
chr8 (225-268)||(34503088-34503131)
chr8 (293-335)||(10749770-10749812)
chr8 (229-271)||(43519903-43519945)
chr8 (198-235)||(204205-204242)
chr8 (198-235)||(319042-319079)
chr8 (290-335)||(44050749-44050794)
[»] chr1 (34 HSPs)
chr1 (198-339)||(46320455-46320596)
chr1 (198-335)||(33206005-33206142)
chr1 (200-337)||(253281-253418)
chr1 (202-335)||(20114539-20114672)
chr1 (204-337)||(26944411-26944544)
chr1 (198-335)||(32160666-32160803)
chr1 (198-337)||(15354116-15354253)
chr1 (19-131)||(15354325-15354433)
chr1 (225-335)||(32161321-32161431)
chr1 (200-336)||(15354562-15354698)
chr1 (19-107)||(31306628-31306716)
chr1 (244-335)||(253028-253119)
chr1 (198-279)||(52427495-52427576)
chr1 (236-335)||(46319684-46319783)
chr1 (250-338)||(51271645-51271733)
chr1 (278-337)||(50117895-50117954)
chr1 (249-335)||(4031543-4031629)
chr1 (200-277)||(21263361-21263438)
chr1 (255-336)||(471122-471203)
chr1 (250-335)||(44596795-44596880)
chr1 (275-335)||(44598985-44599045)
chr1 (250-336)||(29765583-29765669)
chr1 (202-273)||(15660235-15660303)
chr1 (198-279)||(33205474-33205551)
chr1 (198-265)||(15659871-15659938)
chr1 (250-312)||(46886441-46886503)
chr1 (225-276)||(15696760-15696811)
chr1 (229-335)||(49874942-49875047)
chr1 (225-312)||(94367-94456)
chr1 (225-268)||(9618722-9618765)
chr1 (260-339)||(29438084-29438163)
chr1 (225-268)||(51461879-51461922)
chr1 (225-279)||(10974750-10974804)
chr1 (229-271)||(49875369-49875411)
[»] chr7 (27 HSPs)
chr7 (19-129)||(36185367-36185477)
chr7 (198-335)||(36185558-36185695)
chr7 (230-335)||(40323665-40323770)
chr7 (238-335)||(36185124-36185220)
chr7 (253-338)||(40323199-40323284)
chr7 (198-279)||(35200762-35200844)
chr7 (198-279)||(4997829-4997910)
chr7 (225-338)||(46738733-46738849)
chr7 (198-268)||(46088984-46089054)
chr7 (273-338)||(48194650-48194715)
chr7 (200-277)||(4997347-4997425)
chr7 (228-273)||(19804629-19804674)
chr7 (224-268)||(31873849-31873893)
chr7 (200-275)||(21582628-21582701)
chr7 (216-275)||(31873395-31873454)
chr7 (198-268)||(47405426-47405496)
chr7 (201-248)||(21762364-21762411)
chr7 (289-339)||(43686941-43686991)
chr7 (274-335)||(47741714-47741775)
chr7 (255-335)||(29593387-29593467)
chr7 (225-268)||(29097886-29097929)
chr7 (225-268)||(48901468-48901511)
chr7 (198-228)||(35200281-35200311)
chr7 (225-271)||(35839387-35839433)
chr7 (257-335)||(46740555-46740632)
chr7 (223-268)||(26833498-26833543)
chr7 (274-335)||(48829897-48829958)
[»] chr6 (16 HSPs)
chr6 (198-336)||(11687894-11688032)
chr6 (224-336)||(11687392-11687504)
chr6 (250-339)||(14012429-14012517)
chr6 (274-335)||(28362812-28362873)
chr6 (198-268)||(25987139-25987209)
chr6 (255-335)||(29061230-29061310)
chr6 (250-335)||(29076377-29076462)
chr6 (250-335)||(29109910-29109995)
chr6 (250-335)||(29111350-29111435)
chr6 (277-337)||(3502718-3502778)
chr6 (255-335)||(29065674-29065754)
chr6 (255-335)||(29074687-29074767)
chr6 (255-335)||(29079451-29079531)
chr6 (255-335)||(29107260-29107340)
chr6 (274-337)||(19757204-19757267)
chr6 (274-335)||(11840328-11840389)
[»] chr2 (22 HSPs)
chr2 (198-335)||(28138287-28138424)
chr2 (198-335)||(17688220-17688357)
chr2 (198-335)||(28137791-28137928)
chr2 (198-336)||(17688756-17688898)
chr2 (225-335)||(39378343-39378453)
chr2 (250-336)||(43870175-43870261)
chr2 (200-279)||(43978122-43978201)
chr2 (225-335)||(7189977-7190089)
chr2 (249-335)||(39377635-39377721)
chr2 (202-279)||(43977583-43977661)
chr2 (198-279)||(432085-432166)
chr2 (198-275)||(16340546-16340623)
chr2 (225-335)||(3943218-3943330)
chr2 (225-335)||(23347354-23347466)
chr2 (200-268)||(33667768-33667836)
chr2 (250-312)||(23346738-23346799)
chr2 (255-339)||(29093892-29093976)
chr2 (202-240)||(13862989-13863027)
chr2 (225-271)||(29600761-29600807)
chr2 (225-268)||(12252123-12252166)
chr2 (209-268)||(17913015-17913074)
chr2 (225-271)||(38340878-38340924)
[»] chr5 (19 HSPs)
chr5 (198-335)||(2532503-2532640)
chr5 (198-335)||(2532020-2532157)
chr5 (225-337)||(35777044-35777156)
chr5 (199-275)||(9070396-9070472)
chr5 (225-335)||(7757259-7757372)
chr5 (251-337)||(9784205-9784291)
chr5 (250-335)||(7762298-7762382)
chr5 (198-265)||(18848014-18848081)
chr5 (204-273)||(29413284-29413353)
chr5 (225-339)||(13568101-13568218)
chr5 (225-335)||(43094602-43094715)
chr5 (610-679)||(12158602-12158671)
chr5 (290-342)||(11699252-11699304)
chr5 (225-340)||(34122453-34122571)
chr5 (254-337)||(43093940-43094023)
chr5 (260-332)||(1397414-1397486)
chr5 (204-248)||(31239775-31239819)
chr5 (274-312)||(31787509-31787547)
chr5 (198-239)||(35776714-35776755)
[»] chr3 (43 HSPs)
chr3 (200-335)||(33304964-33305097)
chr3 (225-336)||(5136519-5136630)
chr3 (225-339)||(5138296-5138410)
chr3 (199-335)||(44687454-44687588)
chr3 (216-335)||(1388117-1388243)
chr3 (230-337)||(13742681-13742788)
chr3 (200-276)||(54203494-54203570)
chr3 (251-335)||(13743160-13743244)
chr3 (200-267)||(3350017-3350084)
chr3 (198-279)||(3349481-3349563)
chr3 (250-335)||(43476125-43476210)
chr3 (199-262)||(44685870-44685933)
chr3 (225-335)||(43478856-43478969)
chr3 (198-268)||(55121596-55121666)
chr3 (275-335)||(16484535-16484595)
chr3 (225-337)||(55385069-55385184)
chr3 (198-271)||(55122110-55122183)
chr3 (260-336)||(48250933-48251009)
chr3 (217-279)||(1387512-1387574)
chr3 (291-337)||(8475759-8475805)
chr3 (250-339)||(600598-600687)
chr3 (218-271)||(11511295-11511348)
chr3 (198-239)||(36346370-36346411)
chr3 (203-248)||(50123009-50123054)
chr3 (260-336)||(46993235-46993311)
chr3 (225-336)||(16647173-16647287)
chr3 (205-268)||(18746595-18746658)
chr3 (274-337)||(50216932-50216995)
chr3 (225-271)||(21343520-21343566)
chr3 (291-339)||(4331914-4331962)
chr3 (225-269)||(11016853-11016897)
chr3 (198-238)||(41754387-41754427)
chr3 (288-336)||(47074202-47074250)
chr3 (225-268)||(40798990-40799033)
chr3 (223-270)||(50122381-50122428)
chr3 (225-271)||(6144324-6144370)
chr3 (225-267)||(32744178-32744220)
chr3 (198-271)||(11510237-11510310)
chr3 (230-271)||(21342870-21342911)
chr3 (255-312)||(46989504-46989561)
chr3 (275-336)||(47070401-47070462)
chr3 (291-336)||(52387718-52387763)
chr3 (225-270)||(55282841-55282886)
[»] scaffold0153 (2 HSPs)
scaffold0153 (200-279)||(16883-16962)
scaffold0153 (216-268)||(17383-17435)
[»] chr4 (16 HSPs)
chr4 (225-335)||(44674099-44674211)
chr4 (255-335)||(37015865-37015945)
chr4 (250-338)||(39590622-39590710)
chr4 (277-335)||(51492006-51492064)
chr4 (225-338)||(16984187-16984303)
chr4 (255-336)||(39588025-39588106)
chr4 (255-335)||(56138181-56138261)
chr4 (198-273)||(31689022-31689097)
chr4 (200-241)||(40900623-40900664)
chr4 (250-312)||(16983479-16983541)
chr4 (291-339)||(16473774-16473822)
chr4 (225-268)||(1736117-1736160)
chr4 (225-268)||(12375989-12376032)
chr4 (225-268)||(36480566-36480609)
chr4 (260-335)||(50278862-50278937)
chr4 (250-340)||(28081388-28081477)
[»] scaffold0206 (1 HSPs)
scaffold0206 (288-335)||(13299-13346)
[»] scaffold0184 (2 HSPs)
scaffold0184 (255-335)||(17965-18045)
scaffold0184 (250-338)||(18347-18435)
[»] scaffold0078 (2 HSPs)
scaffold0078 (250-338)||(54409-54497)
scaffold0078 (255-335)||(54799-54879)


Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 364 - 710
Target Start/End: Original strand, 37736346 - 37736692
Alignment:
Q  364 acgcatcgatattttaggtgtaacatgataatttaaaggtgtaacttaaaaaactcttaattaaaatatattgaaatattaattggcgtgaactccaatt 463  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37736346 acgcatcgatattttaggtgtaacatgataatttaaaggtgtaacttgaaaaactcttaattaaaatatattgaaatattaattggcgtgaactccaatt 37736445  T
Q  464 tatatatattaaaattttcaaaaagaaattgatagttccattaatactctaaacattaacnnnnnnnnnnnnnnnnnnnnnnnnngtcattgttgttaca 563  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                         |||||||||||||||    
T  37736446 tatatatattaaaattttcaaaaagaaattgatagttccattaatactctaaacattaactttttttgggggagtttttgtttttgtcattgttgttaca 37736545  T
Q  564 gaccacaagcattgatgtcttcgatagaagaaggcatgacgaacttgattttgaattcctgggtaataaagctggaaaaccatggcagttccaaacaaac 663  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37736546 gaccacaagcattgatgtcttcgatagaagaaggcatgacgaacttgattttgaattcctgggtaataaagctggaaaaccatggcagttccaaacaaac 37736645  T
Q  664 ttgtttggaaatggaactagtggtcgcgaggagcgttacgatctctg 710  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  37736646 ttgtttggaaatggaactagtggtcgtgaggagcgttacgatctctg 37736692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 198 - 335
Target Start/End: Complemental strand, 7577187 - 7577050
Alignment:
Q  198 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgt 297  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |    
T  7577187 cgtcggcagttaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcggtagttaactgtcgcaggggtaaaaacgtcatttactcat 7577088  T
Q  298 gtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  7577087 gtggcacagccttatgtaatgtgggaacagcaattctc 7577050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 198 - 335
Target Start/End: Original strand, 7577590 - 7577727
Alignment:
Q  198 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgt 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||||| |||||||||||||    
T  7577590 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggtttcaaacttcggtagttaattgccgcaggggtaaaaacgtcatttactcgt 7577689  T
Q  298 gtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  7577690 gtggcacagccttatgtaatgtgggaacagcaattctc 7577727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 198 - 335
Target Start/End: Original strand, 27704532 - 27704669
Alignment:
Q  198 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgt 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||| ||||| |||||||| ||||    
T  27704532 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggtttcaaacttcggtagttaactgctgcaggggtaaaaacgtcatttattcgt 27704631  T
Q  298 gtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  27704632 gtggcacagccttatgtaatgtgggaacagcaattctc 27704669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 198 - 337
Target Start/End: Complemental strand, 27704132 - 27703993
Alignment:
Q  198 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgt 297  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| | ||    
T  27704132 cgtcggcagttaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcggtagttaactgccgcaggggtaaaaacgtcatttatttgt 27704033  T
Q  298 gtggcacaaccttatgtaatatgggaacagcaattctcaa 337  Q
    |||||||| ||||||||||| |||||||||||||||||||    
T  27704032 gtggcacagccttatgtaatgtgggaacagcaattctcaa 27703993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 198 - 291
Target Start/End: Original strand, 37577732 - 37577825
Alignment:
Q  198 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggggcaaaaatgtcattt 291  Q
    |||||||||||||| | ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||| |||||||| ||||    
T  37577732 cgtcggcagttaaccgtcgaaggaacttcggtagttaattgcagccggttcaaaacttcggtagttaactgtcgcaagggtaaaaatgttattt 37577825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 198 - 332
Target Start/End: Complemental strand, 37577402 - 37577268
Alignment:
Q  198 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgt 297  Q
    |||||||||||||| ||||||| |||||| ||||||| ||| || ||||||||||||| |||||||||||   |||| |||||||  | |||||| ||||    
T  37577402 cgtcggcagttaacggccgaagaaacttcagtagttacctgtagtcggttccaaacttaggtagttaactactgcagaggcaaaatcggcatttattcgt 37577303  T
Q  298 gtggcacaaccttatgtaatatgggaacagcaatt 332  Q
    ||| |||| |||| |||||| || |||||||||||    
T  37577302 gtgacacagccttgtgtaatgtgagaacagcaatt 37577268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 250 - 335
Target Start/End: Complemental strand, 34366930 - 34366846
Alignment:
Q  250 aaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    ||||||||| ||||||||| || ||||||||||| ||| ||||||||||||||||| ||||||||||| |||||||| ||||||||    
T  34366930 aaacttcggcagttaactgacg-aggggcaaaaaggtcttttactcgtgtggcacagccttatgtaatgtgggaacatcaattctc 34366846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 225 - 338
Target Start/End: Complemental strand, 39601751 - 39601635
Alignment:
Q  225 tcggtagttaactgcagccgg--ttc-caaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgg 321  Q
    |||| ||||||||||||||||  |||  ||||||||| ||||||||||||    || ||||| ||||||||||||||||||||| ||||||||||| |||    
T  39601751 tcggcagttaactgcagccggatttctaaaacttcggcagttaactgtcgagaaggtaaaaacgtcatttactcgtgtggcacagccttatgtaatgtgg 39601652  T
Q  322 gaacagcaattctcaaa 338  Q
    ||| |||||||||||||    
T  39601651 gaatagcaattctcaaa 39601635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 274 - 335
Target Start/End: Original strand, 44052304 - 44052365
Alignment:
Q  274 ggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    |||||||||| |||||||||||||||| |||||||||||||||| |||||||| ||||||||    
T  44052304 ggggcaaaaacgtcatttactcgtgtgccacaaccttatgtaatgtgggaacaacaattctc 44052365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 273 - 335
Target Start/End: Original strand, 41250148 - 41250210
Alignment:
Q  273 aggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    ||||||||||| |||| ||||||||||| |||||||||||| ||| |||||||| ||||||||    
T  41250148 aggggcaaaaacgtcaattactcgtgtgccacaaccttatgcaatgtgggaacaacaattctc 41250210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 275 - 336
Target Start/End: Original strand, 39604398 - 39604459
Alignment:
Q  275 gggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctca 336  Q
    ||||||||| |||| |||||||||||||||| ||||||||||| |||| ||| |||||||||    
T  39604398 gggcaaaaacgtcaattactcgtgtggcacagccttatgtaatgtggggacaacaattctca 39604459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 262 - 335
Target Start/End: Original strand, 39939281 - 39939354
Alignment:
Q  262 ttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    ||||||||||  || ||||||| |||||||||||||||| |||| ||||||||||| ||||||||  |||||||    
T  39939281 ttaactgtcgagggagcaaaaacgtcatttactcgtgtgacacatccttatgtaatgtgggaacaataattctc 39939354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 274 - 335
Target Start/End: Complemental strand, 43262420 - 43262359
Alignment:
Q  274 ggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    |||| ||||| ||||||||||||||||||||| ||||||||||| || ||||| ||||||||    
T  43262420 ggggtaaaaacgtcatttactcgtgtggcacagccttatgtaatgtgagaacaacaattctc 43262359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 12715722 - 12715771
Alignment:
Q  200 tcggcagttaactgccgaaggaacttcggtagttaactgcagccggttcc 249  Q
    ||||||||||||||||||   |||||||| ||||||||||||||||||||    
T  12715722 tcggcagttaactgccgacaaaacttcggcagttaactgcagccggttcc 12715771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 28694513 - 28694557
Alignment:
Q  291 tactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    ||||||||||||||||||||||||||| ||  |||||||||||||    
T  28694513 tactcgtgtggcacaaccttatgtaatgtgttaacagcaattctc 28694557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 255 - 335
Target Start/End: Original strand, 35966808 - 35966888
Alignment:
Q  255 tcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    |||| ||||||||| ||  ||||||||| |||  |||||| ||||| |||||||||||  |||||||||||| ||||||||    
T  35966808 tcggcagttaactgccgagggggcaaaattgtattttactagtgtgacacaaccttatcaaatatgggaacaacaattctc 35966888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 268
Target Start/End: Complemental strand, 3695414 - 3695371
Alignment:
Q  225 tcggtagttaactgcagccggttccaaacttcggtagttaactg 268  Q
    |||||||||||||||||||||||||| | ||||| |||||||||    
T  3695414 tcggtagttaactgcagccggttccataattcggcagttaactg 3695371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 271
Target Start/End: Complemental strand, 25994490 - 25994447
Alignment:
Q  228 gtagttaactgcagccggttccaaacttcggtagttaactgtcg 271  Q
    ||||||||||||||||||||||| | ||||| ||||||||||||    
T  25994490 gtagttaactgcagccggttccataattcggcagttaactgtcg 25994447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 268
Target Start/End: Original strand, 30026260 - 30026303
Alignment:
Q  225 tcggtagttaactgcagccggttccaaacttcggtagttaactg 268  Q
    |||||||||||||||||||||||||| | ||||| |||||||||    
T  30026260 tcggtagttaactgcagccggttccataattcggcagttaactg 30026303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 268
Target Start/End: Original strand, 34503088 - 34503131
Alignment:
Q  225 tcggtagttaactgcagccggttccaaacttcggtagttaactg 268  Q
    |||||||||||||||||||||||||| | ||||| |||||||||    
T  34503088 tcggtagttaactgcagccggttccataattcggcagttaactg 34503131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 293 - 335
Target Start/End: Original strand, 10749770 - 10749812
Alignment:
Q  293 ctcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    ||||||||||||||||||||||||| ||  |||||||||||||    
T  10749770 ctcgtgtggcacaaccttatgtaatgtgtaaacagcaattctc 10749812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 229 - 271
Target Start/End: Complemental strand, 43519945 - 43519903
Alignment:
Q  229 tagttaactgcagccggttccaaacttcggtagttaactgtcg 271  Q
    |||||||||||||||||||||| | ||||| ||||||||||||    
T  43519945 tagttaactgcagccggttccataattcggcagttaactgtcg 43519903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 235
Target Start/End: Original strand, 204205 - 204242
Alignment:
Q  198 cgtcggcagttaactgccgaaggaacttcggtagttaa 235  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  204205 cgtcggtagttaactgtcgaaggaacttcggtagttaa 204242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 235
Target Start/End: Original strand, 319042 - 319079
Alignment:
Q  198 cgtcggcagttaactgccgaaggaacttcggtagttaa 235  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  319042 cgtcggtagttaactgtcgaaggaacttcggtagttaa 319079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 44050794 - 44050749
Alignment:
Q  290 ttactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    ||||||||||| |||| ||||||| ||| |||||||||||||||||    
T  44050794 ttactcgtgtgccacagccttatgcaatgtgggaacagcaattctc 44050749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 8e-60; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 198 - 339
Target Start/End: Original strand, 46320455 - 46320596
Alignment:
Q  198 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgt 297  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||| |||||||||||||    
T  46320455 cgtcggcagttaactgccgaaggaccttcggtagttaactgcagccggtttcaaacttcggtagttaactaccgcaggggcaaaaacgtcatttactcgt 46320554  T
Q  298 gtggcacaaccttatgtaatatgggaacagcaattctcaaaa 339  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  46320555 gtggcacaaccttatgtaatgtgggaacagcaattctcaaaa 46320596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 198 - 335
Target Start/End: Original strand, 33206005 - 33206142
Alignment:
Q  198 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgt 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||    
T  33206005 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtaattaactgccgcaggggtaaaaatgtcatttactcgt 33206104  T
Q  298 gtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    ||||||||  |||||||||| |||||||||||||||||    
T  33206105 gtggcacagtcttatgtaatgtgggaacagcaattctc 33206142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 200 - 337
Target Start/End: Original strand, 253281 - 253418
Alignment:
Q  200 tcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgt 299  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  253281 tcggtagttaactgtcgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactaccgcaggggcaaaaatgtcatttactcgtgt 253380  T
Q  300 ggcacaaccttatgtaatatgggaacagcaattctcaa 337  Q
    |||||| ||||| ||||| |||||||| ||||||||||    
T  253381 ggcacagccttacgtaatgtgggaacaacaattctcaa 253418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 202 - 335
Target Start/End: Complemental strand, 20114672 - 20114539
Alignment:
Q  202 ggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtgg 301  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||| |||||||||||||||||    
T  20114672 ggcaattaactgccgaaggaacttcggtagttaactgcagccggttcccaacttcggtagttaactaccgcaggggcaaaaacgtcatttactcgtgtgg 20114573  T
Q  302 cacaaccttatgtaatatgggaacagcaattctc 335  Q
    |||| ||||||||||| |||||||| ||||||||    
T  20114572 cacagccttatgtaatgtgggaacaacaattctc 20114539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 204 - 337
Target Start/End: Complemental strand, 26944544 - 26944411
Alignment:
Q  204 cagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggca 303  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| || ||||||||||| |||||||||||||||||||    
T  26944544 cagttaactgccgaaggaacttcgggagttaactgcagccggttccaaacttcgatagttaactgccgtaggggcaaaaacgtcatttactcgtgtggca 26944445  T
Q  304 caaccttatgtaatatgggaacagcaattctcaa 337  Q
    || ||||||||||| |||||||| ||||||||||    
T  26944444 cagccttatgtaatgtgggaacaacaattctcaa 26944411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 198 - 335
Target Start/End: Complemental strand, 32160803 - 32160666
Alignment:
Q  198 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgt 297  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| | |||||||||||    
T  32160803 cgtcggcagttaactgtcgaaggaacttcggaagttaactgcagccggttccaaacttcggtagttaactgccgcaggggtaaaaacgacatttactcgt 32160704  T
Q  298 gtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    |||||||| ||||||||||| ||||| |||||||||||    
T  32160703 gtggcacagccttatgtaatgtgggatcagcaattctc 32160666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 198 - 337
Target Start/End: Complemental strand, 15354253 - 15354116
Alignment:
Q  198 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgt 297  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||| ||| ||| | |||||||||||||||||||    
T  15354253 cgtcggcagttaactgccgaaggaatttcggtagttaactgtagccggttccaaacttcgatagttaactatcgtaggagtaaaaatgtcatttactcgt 15354154  T
Q  298 gtggcacaaccttatgtaatatgggaacagcaattctcaa 337  Q
    |||  ||||||||||||||| |||||| ||||||||||||    
T  15354153 gtg--acaaccttatgtaatgtgggaatagcaattctcaa 15354116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 15354433 - 15354325
Alignment:
Q  19 gatttaccatcaaaacctgagaagattgccattgttggtgggggttacattgccttggagtttgctggtatctttaatggtttgaaaagtgatgttggaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15354433 gatttaccatcaaaacctgagaagattgccattgttggtgggggtt----tgccttggagtttgctggtatctttaatggtttgaaaagtgatgttggaa 15354338  T
Q  119 gtacctttgtttt 131  Q
    |||||||| ||||    
T  15354337 gtacctttatttt 15354325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 225 - 335
Target Start/End: Original strand, 32161321 - 32161431
Alignment:
Q  225 tcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaa 324  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||    
T  32161321 tcggtagttaactgcagccggttccaaacttcggtagttaactgccgcaggggcaaaaacgtcatttactcgtgtggcacagccttatgtaatgtgggaa 32161420  T
Q  325 cagcaattctc 335  Q
    || ||||||||    
T  32161421 caacaattctc 32161431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 200 - 336
Target Start/End: Original strand, 15354562 - 15354698
Alignment:
Q  200 tcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgt 299  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||  || |||||||  ||||||  ||||| |||||||||||||||    
T  15354562 tcggcagttaactgccgaaggaacttcggtagttaaccgcagccggttctaaacttcaatatttaactgctgcagggataaaaacgtcatttactcgtgt 15354661  T
Q  300 ggcacaaccttatgtaatatgggaacagcaattctca 336  Q
    | |||||||||||||||| ||||||||||||||||||    
T  15354662 gacacaaccttatgtaatgtgggaacagcaattctca 15354698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 31306628 - 31306716
Alignment:
Q  19 gatttaccatcaaaacctgagaagattgccattgttggtgggggttacattgccttggagtttgctggtatctttaatggtttgaaaag 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31306628 gatttaccatcaaaacctgagaagattgccattgttggtgggggttacattgccttggagtttgctggtatctttaatggtttgaaaag 31306716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 244 - 335
Target Start/End: Complemental strand, 253119 - 253028
Alignment:
Q  244 ggttccaaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    |||||||||||||||||| |||||  |||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  253119 ggttccaaacttcggtagataactaccgcaggggcaaaaacgtcatttactcgtgtggcacagccttatgtaatgtgggaacagcaattctc 253028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 198 - 279
Target Start/End: Original strand, 52427495 - 52427576
Alignment:
Q  198 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggggca 279  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  52427495 cgtcggcagttaactgtcgaaggaacttcgatagttaactgcagccggttccaaacttcggtagttaactgtagcagaggca 52427576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 236 - 335
Target Start/End: Complemental strand, 46319783 - 46319684
Alignment:
Q  236 ctgcagccggttccaaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    ||||||||||||| ||||||||||||||||||  ||||||  |||||| ||||||||||||||||||||| || |||||||| |||||||| ||||||||    
T  46319783 ctgcagccggttctaaacttcggtagttaactaccgcaggaacaaaaacgtcatttactcgtgtggcacagccatatgtaatgtgggaacaacaattctc 46319684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 250 - 338
Target Start/End: Original strand, 51271645 - 51271733
Alignment:
Q  250 aaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctcaaa 338  Q
    ||||||||| ||||||||| ||  |||||||||| ||||||||| ||||||||||||||||||||||| |||||||| |||||||||||    
T  51271645 aaacttcggcagttaactgccgagggggcaaaaacgtcatttacccgtgtggcacaaccttatgtaatttgggaacaacaattctcaaa 51271733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 278 - 337
Target Start/End: Original strand, 50117895 - 50117954
Alignment:
Q  278 caaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctcaa 337  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  50117895 caaaaatgtcatttactcgtgtggcacaaccttatgtaatgtgggaacagcaattctcaa 50117954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 4031543 - 4031629
Alignment:
Q  249 caaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    ||||||||| ||||||||||  |||||| ||||||| ||||||||| |||||||| |||||||||||||||||||||| ||||||||    
T  4031543 caaacttcgatagttaactgctgcagggacaaaaatatcatttacttgtgtggcataaccttatgtaatatgggaacaacaattctc 4031629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 200 - 277
Target Start/End: Complemental strand, 21263438 - 21263361
Alignment:
Q  200 tcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcagggg 277  Q
    |||||||||||||| ||||| |||||||| | |||||||||| |||||||||||||||||||||||||| ||||||||    
T  21263438 tcggcagttaactgtcgaagaaacttcgggaattaactgcagtcggttccaaacttcggtagttaactgccgcagggg 21263361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 255 - 336
Target Start/End: Original strand, 471122 - 471203
Alignment:
Q  255 tcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctca 336  Q
    |||| ||||||||| ||  |||||||||| ||||||||| || |||||||||||||||||||| |||||||| |||||||||    
T  471122 tcggcagttaactgccgatggggcaaaaacgtcatttacccgcgtggcacaaccttatgtaatgtgggaacaacaattctca 471203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 250 - 335
Target Start/End: Complemental strand, 44596880 - 44596795
Alignment:
Q  250 aaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    ||||||||| ||||||||| ||   ||||||||| |||||||||||||||||||||  |||||||||| |||||||| ||||||||    
T  44596880 aaacttcggcagttaactgccgagcgggcaaaaacgtcatttactcgtgtggcacagtcttatgtaatgtgggaacaacaattctc 44596795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 275 - 335
Target Start/End: Original strand, 44598985 - 44599045
Alignment:
Q  275 gggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||| ||| ||||||||    
T  44598985 gggcaaaaatgtcatttactcgtgtggcacaaccctatgtaatgtgggtacaacaattctc 44599045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 250 - 336
Target Start/End: Original strand, 29765583 - 29765669
Alignment:
Q  250 aaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctca 336  Q
    ||||||||| ||||||||| ||  ||| |||||| |||||||| |||||||| ||||||||||| ||| |||||||| |||||||||    
T  29765583 aaacttcggcagttaactgccgaggggacaaaaacgtcatttattcgtgtggtacaaccttatgcaatgtgggaacaacaattctca 29765669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 202 - 273
Target Start/End: Original strand, 15660235 - 15660303
Alignment:
Q  202 ggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgca 273  Q
    ||||||||||||||||||||||   |  |||||||||||||||||||||||| |||||||||||||| ||||    
T  15660235 ggcagttaactgccgaaggaac---gagagttaactgcagccggttccaaacatcggtagttaactgccgca 15660303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 198 - 279
Target Start/End: Complemental strand, 33205551 - 33205474
Alignment:
Q  198 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggggca 279  Q
    ||||||||||||||||||| ||    ||||| |||||||| ||||||||||||||||||||||| |||||| ||||| ||||    
T  33205551 cgtcggcagttaactgccgtag----ttcggcagttaactacagccggttccaaacttcggtaggtaactgccgcagaggca 33205474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 198 - 265
Target Start/End: Complemental strand, 15659938 - 15659871
Alignment:
Q  198 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaa 265  Q
    ||||| ||||||||||  |||||||||||  |||||||||| |||||||||||||||||| |||||||    
T  15659938 cgtcgacagttaactgttgaaggaacttcaatagttaactgtagccggttccaaacttcgatagttaa 15659871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 250 - 312
Target Start/End: Original strand, 46886441 - 46886503
Alignment:
Q  250 aaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttat 312  Q
    ||||||||| ||||||||| ||  |||||||||| ||||||||||||||| ||||||||||||    
T  46886441 aaacttcggcagttaactgccgagggggcaaaaacgtcatttactcgtgtagcacaaccttat 46886503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 225 - 276
Target Start/End: Original strand, 15696760 - 15696811
Alignment:
Q  225 tcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggg 276  Q
    |||||||||||||||||||||||||| | ||||| |||||||||||| ||||    
T  15696760 tcggtagttaactgcagccggttccataattcggcagttaactgtcgaaggg 15696811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 229 - 335
Target Start/End: Complemental strand, 49875047 - 49874942
Alignment:
Q  229 tagttaactgcagccggttccaaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagc 328  Q
    |||||||||||||||||||||| | ||||| |||||||||||| |||| |||    || | ||||||||||| |||||||||||| ||| ||  |||| |    
T  49875047 tagttaactgcagccggttccataattcggcagttaactgtcg-agggacaatttagtaaattactcgtgtgacacaaccttatgcaatgtgtcaacaac 49874949  T
Q  329 aattctc 335  Q
    |||||||    
T  49874948 aattctc 49874942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 312
Target Start/End: Complemental strand, 94456 - 94367
Alignment:
Q  225 tcggtagttaactgcagccgg--ttc-caaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttat 312  Q
    |||||||||||||||||| ||  |||  ||||||||| ||||||||| || | ||||||||| ||||||||||| ||||||||| ||||||    
T  94456 tcggtagttaactgcagctggatttctaaaacttcggcagttaactgccg-aagggcaaaaacgtcatttactcatgtggcacagccttat 94367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 268
Target Start/End: Complemental strand, 9618765 - 9618722
Alignment:
Q  225 tcggtagttaactgcagccggttccaaacttcggtagttaactg 268  Q
    |||||||||||||||||||||||||| | ||||| |||||||||    
T  9618765 tcggtagttaactgcagccggttccataattcggcagttaactg 9618722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 260 - 339
Target Start/End: Original strand, 29438084 - 29438163
Alignment:
Q  260 agttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctcaaaa 339  Q
    ||||||||| ||  |||||||||| || | ||| ||||||| |||||||||||  ||| |||||||| ||||||||||||    
T  29438084 agttaactgccgagggggcaaaaacgtaaattattcgtgtgccacaaccttatcaaatgtgggaacaacaattctcaaaa 29438163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 268
Target Start/End: Original strand, 51461879 - 51461922
Alignment:
Q  225 tcggtagttaactgcagccggttccaaacttcggtagttaactg 268  Q
    |||||||||||||||||||||||||| | ||||| |||||||||    
T  51461879 tcggtagttaactgcagccggttccacaattcggcagttaactg 51461922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 225 - 279
Target Start/End: Original strand, 10974750 - 10974804
Alignment:
Q  225 tcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggggca 279  Q
    |||| ||||||||||| ||||||||  ||||| ||||||||||||||||| ||||    
T  10974750 tcggcagttaactgcaaccggttccttacttcagtagttaactgtcgcagaggca 10974804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 229 - 271
Target Start/End: Original strand, 49875369 - 49875411
Alignment:
Q  229 tagttaactgcagccggttccaaacttcggtagttaactgtcg 271  Q
    ||||||||||||| |||||||| | ||||||||||||||||||    
T  49875369 tagttaactgcagtcggttccataattcggtagttaactgtcg 49875411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 3e-53; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 36185367 - 36185477
Alignment:
Q  19 gatttaccatcaaaacctgagaagattgccattgttggtgggggttacattgccttggagtttgctggtatctttaatggtttgaaaagtgatgttggaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36185367 gatttaccatcaaaacctgagaagattgccattgttggtggaggttacattgccttggagtttgctggtatctttaatggtttgaaaagtgatgttggaa 36185466  T
Q  119 gtacctttgtt 129  Q
    |||||||||||    
T  36185467 gtacctttgtt 36185477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 198 - 335
Target Start/End: Original strand, 36185558 - 36185695
Alignment:
Q  198 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgt 297  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||| |||||||||||||    
T  36185558 cgtcggcagttaactgccgaaggagcttcggtagttaactgcagccggttccaaatttcggtagtgaactgccgcaggggcaaaaacgtcatttactcgt 36185657  T
Q  298 gtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    |||||||| ||||||||||| ||| |||||||||||||    
T  36185658 gtggcacagccttatgtaatgtggaaacagcaattctc 36185695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 230 - 335
Target Start/End: Original strand, 40323665 - 40323770
Alignment:
Q  230 agttaactgcagccggttccaaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagca 329  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||| ||||||||||| |||||||||||    
T  40323665 agttaactgcagccggttccaaacttcggtagttaactgccgcaggggcaaaaacgtcatttacttgtgtggcacagccttatgtaatgtgggaacagca 40323764  T
Q  330 attctc 335  Q
    ||||||    
T  40323765 attctc 40323770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 238 - 335
Target Start/End: Complemental strand, 36185220 - 36185124
Alignment:
Q  238 gcagccggttccaaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    ||||||||||||||||||||||||||||||| |||||||  |||||| |||||||||||||||||||||||||||| ||| |||||| ||||||||||    
T  36185220 gcagccggttccaaacttcggtagttaactgccgcagggt-aaaaatatcatttactcgtgtggcacaaccttatggaatgtgggaaaagcaattctc 36185124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 253 - 338
Target Start/End: Complemental strand, 40323284 - 40323199
Alignment:
Q  253 cttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctcaaa 338  Q
    ||||||||||||| || |||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||| |||||||||||    
T  40323284 cttcggtagttaattgccgcaggggcaaaaatgtcatttactcatgtggcacagccttatgtaatgtgggaacaacaattctcaaa 40323199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 198 - 279
Target Start/End: Original strand, 35200762 - 35200844
Alignment:
Q  198 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccgg-ttccaaacttcggtagttaactgtcgcaggggca 279  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||| ||| |||||||||||| |||||| ||||||||||    
T  35200762 cgtcggcagttaactgtcgaagaaacttcggtagttaactgcagccggtttcaaaacttcggtagctaactgccgcaggggca 35200844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 198 - 279
Target Start/End: Original strand, 4997829 - 4997910
Alignment:
Q  198 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggggca 279  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||| || |||||||||||||||| ||  ||||||||||    
T  4997829 cgtcggcaattaactgccgaaggaacttcgatagttaactgcagccgatttcaaacttcggtagttagctaccgcaggggca 4997910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 225 - 338
Target Start/End: Complemental strand, 46738849 - 46738733
Alignment:
Q  225 tcggtagttaactgcagccgg--ttc-caaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgg 321  Q
    |||| ||||||||||||||||  |||  ||||||||| ||||||||| ||   ||||||||| ||||||| ||||||||||||||||||||||||| |||    
T  46738849 tcggcagttaactgcagccggatttctaaaacttcggcagttaactgccgagagggcaaaaacgtcatttgctcgtgtggcacaaccttatgtaatgtgg 46738750  T
Q  322 gaacagcaattctcaaa 338  Q
    ||||| |||||||||||    
T  46738749 gaacaacaattctcaaa 46738733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 198 - 268
Target Start/End: Complemental strand, 46089054 - 46088984
Alignment:
Q  198 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactg 268  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||   | |||||||||||||||    
T  46089054 cgtcggcagttaactgccgaaggaacttcgggagttaactgcagccggttcattatttcggtagttaactg 46088984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 273 - 338
Target Start/End: Original strand, 48194650 - 48194715
Alignment:
Q  273 aggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctcaaa 338  Q
    ||||||||||| |||||||||||||||  |||| ||||||||||| ||||||||||||||||||||    
T  48194650 aggggcaaaaacgtcatttactcgtgtatcacagccttatgtaatgtgggaacagcaattctcaaa 48194715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 200 - 277
Target Start/End: Complemental strand, 4997425 - 4997347
Alignment:
Q  200 tcggcagttaactgccgaaggaacttcggtagttaactgcagccgg-ttccaaacttcggtagttaactgtcgcagggg 277  Q
    |||||| ||||||||||||| || ||||||||||||||| |||||| ||| ||||||||||||||||||| || |||||    
T  4997425 tcggcacttaactgccgaagaaatttcggtagttaactgtagccggtttcaaaacttcggtagttaactgccgtagggg 4997347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 228 - 273
Target Start/End: Original strand, 19804629 - 19804674
Alignment:
Q  228 gtagttaactgcagccggttccaaacttcggtagttaactgtcgca 273  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  19804629 gtagttaactgcagccggttccaaacttcggtagttaattgtcgca 19804674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 31873849 - 31873893
Alignment:
Q  224 ttcggtagttaactgcagccggttccaaacttcggtagttaactg 268  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  31873849 ttcggtagttaactgcagccggttccaaacatcggtagttaactg 31873893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 200 - 275
Target Start/End: Original strand, 21582628 - 21582701
Alignment:
Q  200 tcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcagg 275  Q
    ||||| ||||||||||| ||||||||||| ||||||||||||||||||||  |||||||||||||| ||| |||||    
T  21582628 tcggctgttaactgccgtaggaacttcgg-agttaactgcagccggttcc-tacttcggtagttaattgttgcagg 21582701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 216 - 275
Target Start/End: Complemental strand, 31873454 - 31873395
Alignment:
Q  216 gaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcagg 275  Q
    ||||||| |||| ||||||||||||| |||||| ||||||||||||||||||| ||||||    
T  31873454 gaaggaatttcgatagttaactgcagtcggttctaaacttcggtagttaactgccgcagg 31873395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 268
Target Start/End: Original strand, 47405426 - 47405496
Alignment:
Q  198 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactg 268  Q
    |||||| |||||| || ||||||||||||||||||||||||||||||||||   | ||| |||||||||||    
T  47405426 cgtcgggagttaattggcgaaggaacttcggtagttaactgcagccggttctttatttcagtagttaactg 47405496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 201 - 248
Target Start/End: Original strand, 21762364 - 21762411
Alignment:
Q  201 cggcagttaactgccgaaggaacttcggtagttaactgcagccggttc 248  Q
    ||||||||||||||||| |||||| |||||||||||||| ||||||||    
T  21762364 cggcagttaactgccgatggaactacggtagttaactgccgccggttc 21762411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 289 - 339
Target Start/End: Original strand, 43686941 - 43686991
Alignment:
Q  289 tttactcgtgtggcacaaccttatgtaatatgggaacagcaattctcaaaa 339  Q
    |||||| |||||||||||||||||  ||| |||||||||||||||||||||    
T  43686941 tttactagtgtggcacaaccttatcaaatgtgggaacagcaattctcaaaa 43686991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 274 - 335
Target Start/End: Complemental strand, 47741775 - 47741714
Alignment:
Q  274 ggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    |||||||||| ||  |||||| |||||||||||||||||||||| || ||||| ||||||||    
T  47741775 ggggcaaaaacgtattttactagtgtggcacaaccttatgtaatgtgagaacaacaattctc 47741714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 255 - 335
Target Start/End: Original strand, 29593387 - 29593467
Alignment:
Q  255 tcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    |||| ||||||||||||  |||| |||| |||  |||||| |||||||||||||||||  ||| |||||||| ||||||||    
T  29593387 tcggcagttaactgtcgagggggtaaaattgtattttactagtgtggcacaaccttatcaaatgtgggaacaacaattctc 29593467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 268
Target Start/End: Original strand, 29097886 - 29097929
Alignment:
Q  225 tcggtagttaactgcagccggttccaaacttcggtagttaactg 268  Q
    |||||||||||||||||||||||||| | ||||| |||||||||    
T  29097886 tcggtagttaactgcagccggttccataattcggcagttaactg 29097929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 268
Target Start/End: Original strand, 48901468 - 48901511
Alignment:
Q  225 tcggtagttaactgcagccggttccaaacttcggtagttaactg 268  Q
    |||||||||||||||||||||||||| | ||||| |||||||||    
T  48901468 tcggtagttaactgcagccggttccataattcggcagttaactg 48901511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 198 - 228
Target Start/End: Complemental strand, 35200311 - 35200281
Alignment:
Q  198 cgtcggcagttaactgccgaaggaacttcgg 228  Q
    |||||||||||||||||||||||||||||||    
T  35200311 cgtcggcagttaactgccgaaggaacttcgg 35200281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 225 - 271
Target Start/End: Complemental strand, 35839433 - 35839387
Alignment:
Q  225 tcggtagttaactgcagccggttccaaacttcggtagttaactgtcg 271  Q
    |||||||||||||||||||||||||| | ||||| | ||||||||||    
T  35839433 tcggtagttaactgcagccggttccataattcggcaattaactgtcg 35839387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 257 - 335
Target Start/End: Original strand, 46740555 - 46740632
Alignment:
Q  257 ggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    ||||||||||||||| |||  |||||| ||||||||||| |||| |||| ||||||  ||| |||||||| ||||||||    
T  46740555 ggtagttaactgtcgaagga-caaaaacgtcatttactcttgtgtcacagccttatcaaatgtgggaacaacaattctc 46740632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 26833498 - 26833543
Alignment:
Q  223 cttcggtagttaactgcagccggttccaaacttcggtagttaactg 268  Q
    |||||||||||||||||||||||||| | | ||||| |||||||||    
T  26833498 cttcggtagttaactgcagccggttctataattcggcagttaactg 26833543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 274 - 335
Target Start/End: Complemental strand, 48829958 - 48829897
Alignment:
Q  274 ggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    |||||||||| || | ||||||||||| |||||||||||  ||| |||||||| ||||||||    
T  48829958 ggggcaaaaacgtaaattactcgtgtgccacaaccttatcaaatgtgggaacaacaattctc 48829897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 3e-53; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 198 - 336
Target Start/End: Original strand, 11687894 - 11688032
Alignment:
Q  198 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgt 297  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||||||||    
T  11687894 cgtcggcagttaactgccgaaggaacttcgggagttaattgcagccgattccaaacttcggtagttaactgccgcaggggtaaaaacgtcatttactcgt 11687993  T
Q  298 gtggcacaaccttatgtaatatgggaacagcaattctca 336  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  11687994 gtggcacagccttatgtaatgtgggaacagcaattctca 11688032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 224 - 336
Target Start/End: Complemental strand, 11687504 - 11687392
Alignment:
Q  224 ttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatggga 323  Q
    ||||| ||||||||||||||||||  ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||| |||| |||||    
T  11687504 ttcgggagttaactgcagccggttttaaacttcggtagttaactgccgcaggggtaaaaacgtcatttactcgtgtggcacaactttatataatgtggga 11687405  T
Q  324 acagcaattctca 336  Q
    |||||||||||||    
T  11687404 acagcaattctca 11687392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 250 - 339
Target Start/End: Original strand, 14012429 - 14012517
Alignment:
Q  250 aaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctcaaaa 339  Q
    ||||||||| |||||||||  | |||| |||||| ||||||||||||||||||||| ||||||  ||| |||||||| ||||||||||||    
T  14012429 aaacttcggcagttaactgctgaaggg-caaaaacgtcatttactcgtgtggcacagccttattaaatgtgggaacaacaattctcaaaa 14012517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 274 - 335
Target Start/End: Original strand, 28362812 - 28362873
Alignment:
Q  274 ggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    |||| ||||| ||||||||||||||||||||| ||||||||||| |||||| ||||||||||    
T  28362812 ggggtaaaaacgtcatttactcgtgtggcacagccttatgtaatgtgggaatagcaattctc 28362873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 268
Target Start/End: Complemental strand, 25987209 - 25987139
Alignment:
Q  198 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactg 268  Q
    |||||||||| ||||| ||||||||||||| ||||||||||||||| ||||   | |||||||||||||||    
T  25987209 cgtcggcagtaaactgtcgaaggaacttcgatagttaactgcagccagttcattatttcggtagttaactg 25987139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 255 - 335
Target Start/End: Complemental strand, 29061310 - 29061230
Alignment:
Q  255 tcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    |||| ||||||||| ||  |||||||||| || | ||||||||||| |||| ||||||||||| |||||||| ||||||||    
T  29061310 tcggcagttaactgccgagggggcaaaaaagtaaattactcgtgtgccacagccttatgtaatgtgggaacaccaattctc 29061230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 250 - 335
Target Start/End: Original strand, 29076377 - 29076462
Alignment:
Q  250 aaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    ||||||||  ||||||||| || ||||||||||| |||| ||||| ||||| |||| ||||||| ||  |||||||| ||||||||    
T  29076377 aaacttcgacagttaactgccgaaggggcaaaaacgtcaattacttgtgtgccacagccttatgcaacgtgggaacaacaattctc 29076462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 250 - 335
Target Start/End: Original strand, 29109910 - 29109995
Alignment:
Q  250 aaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    ||||||||  ||||||||| || ||||||||||| |||| ||||| ||||| |||| ||||||| ||  |||||||| ||||||||    
T  29109910 aaacttcgacagttaactgccgaaggggcaaaaacgtcaattacttgtgtgccacagccttatgcaacgtgggaacaacaattctc 29109995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 250 - 335
Target Start/End: Original strand, 29111350 - 29111435
Alignment:
Q  250 aaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    ||||||||  ||||||||| || ||||||||||| |||| ||||| ||||| |||| ||||||| ||  |||||||| ||||||||    
T  29111350 aaacttcgacagttaactgccgaaggggcaaaaacgtcaattacttgtgtgccacagccttatgcaacgtgggaacaacaattctc 29111435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 277 - 337
Target Start/End: Original strand, 3502718 - 3502778
Alignment:
Q  277 gcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctcaa 337  Q
    ||||||| |||||||||||||||| |||||||||||| ||| ||  || ||||||||||||    
T  3502718 gcaaaaacgtcatttactcgtgtgacacaaccttatgaaatgtgtaaatagcaattctcaa 3502778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 255 - 335
Target Start/End: Complemental strand, 29065754 - 29065674
Alignment:
Q  255 tcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    |||| ||||||||| ||  |||||||||| || | ||||||||||| |||| |||||| |||| |||||||| ||||||||    
T  29065754 tcggcagttaactgccgagggggcaaaaaagtaaattactcgtgtgccacagccttatttaatgtgggaacaacaattctc 29065674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 255 - 335
Target Start/End: Complemental strand, 29074767 - 29074687
Alignment:
Q  255 tcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    |||| ||||||||| ||  |||||||||| || | ||||||||||| |||| |||||| |||| |||||||| ||||||||    
T  29074767 tcggcagttaactgccgagggggcaaaaaagtaaattactcgtgtgccacagccttatttaatgtgggaacaacaattctc 29074687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 255 - 335
Target Start/End: Complemental strand, 29079531 - 29079451
Alignment:
Q  255 tcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    |||| ||||||||| ||  |||||||||| || | ||||||||||| |||| |||||| |||| |||||||| ||||||||    
T  29079531 tcggcagttaactgccgagggggcaaaaaagtaaattactcgtgtgccacagccttatttaatgtgggaacaacaattctc 29079451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 255 - 335
Target Start/End: Complemental strand, 29107340 - 29107260
Alignment:
Q  255 tcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    |||| ||||||||| ||  |||||||||| || | ||||||||||| |||| |||||| |||| |||||||| ||||||||    
T  29107340 tcggcagttaactgccgagggggcaaaaaagtaaattactcgtgtgccacagccttatttaatgtgggaacaacaattctc 29107260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 274 - 337
Target Start/End: Complemental strand, 19757267 - 19757204
Alignment:
Q  274 ggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctcaa 337  Q
    ||||||||||||||| ||| ||||||| || ||||||||| ||  |||||| ||||||||||||    
T  19757267 ggggcaaaaatgtcaattattcgtgtgccagaaccttatgcaaggtgggaatagcaattctcaa 19757204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 274 - 335
Target Start/End: Original strand, 11840328 - 11840389
Alignment:
Q  274 ggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    ||||||||||  ||| ||||||||||| |||| ||||||| ||| |||||||| ||||||||    
T  11840328 ggggcaaaaacatcaattactcgtgtgtcacagccttatgcaatgtgggaacaacaattctc 11840389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 1e-52; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 198 - 335
Target Start/End: Original strand, 28138287 - 28138424
Alignment:
Q  198 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgt 297  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||    
T  28138287 cgtcggcagttaactgccgaaggaacttcgggagttaactgcagccggttccaaacatcggtagttaactgtcgcagggacaaaaacgtcatttactcgt 28138386  T
Q  298 gtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    |||||| | |||| |||||| |||||||||||||||||    
T  28138387 gtggcatagccttttgtaatgtgggaacagcaattctc 28138424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 198 - 335
Target Start/End: Complemental strand, 17688357 - 17688220
Alignment:
Q  198 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgt 297  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||  |||||| ||||||| |||||||| ||||    
T  17688357 cgtcggcagttaactgccgaagaaacttcggtagttaactgcagccggttccaaacttcagtagttaactaccgcaggagcaaaaacgtcatttattcgt 17688258  T
Q  298 gtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  17688257 gtggcacagccttatgtaatgtgggaacagcaattctc 17688220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 198 - 335
Target Start/End: Complemental strand, 28137928 - 28137791
Alignment:
Q  198 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgt 297  Q
    ||||||||||||||||||||||||||||||| ||||||||||| || ||| |||||||| |||||||||||  | | ||||||||| |||||||||||||    
T  28137928 cgtcggcagttaactgccgaaggaacttcgggagttaactgcaaccagtttcaaacttcagtagttaactgctgtaagggcaaaaacgtcatttactcgt 28137829  T
Q  298 gtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  28137828 gtggcacaaccttatataatgtgggaacagcaattctc 28137791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 198 - 336
Target Start/End: Original strand, 17688756 - 17688898
Alignment:
Q  198 cgtcggcagttaactgccgaaggaac----ttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggggcaaaaatgtcatttac 293  Q
    |||||||||||||||| ||||||||     |||||||||||||||| ||| |||||||||||||||||||||||  |||||||||||||| |||||||||    
T  17688756 cgtcggcagttaactgtcgaaggaaggaatttcggtagttaactgccgccagttccaaacttcggtagttaactaccgcaggggcaaaaacgtcatttac 17688855  T
Q  294 tcgtgtggcacaaccttatgtaatatgggaacagcaattctca 336  Q
     ||||||||| | |||||||| || |||||||| |||||||||    
T  17688856 acgtgtggcatagccttatgtgatgtgggaacaacaattctca 17688898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 225 - 335
Target Start/End: Original strand, 39378343 - 39378453
Alignment:
Q  225 tcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaa 324  Q
    |||| ||||||||||||||| ||||||||||||||||||||||  ||||  |||||||| ||||||||||||||||||||  || |||||||| ||||||    
T  39378343 tcggcagttaactgcagccgattccaaacttcggtagttaactaccgcaaaggcaaaaacgtcatttactcgtgtggcacggccatatgtaatgtgggaa 39378442  T
Q  325 cagcaattctc 335  Q
    || ||||||||    
T  39378443 caacaattctc 39378453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 250 - 336
Target Start/End: Original strand, 43870175 - 43870261
Alignment:
Q  250 aaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctca 336  Q
    ||||||||| ||||||||| ||  |||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  43870175 aaacttcggcagttaactgccgatggggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacatcaattctca 43870261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 200 - 279
Target Start/End: Original strand, 43978122 - 43978201
Alignment:
Q  200 tcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggggca 279  Q
    |||||||||||||| ||||||||||||| |||||||||||||||| || |||||||||||||||||||  ||||||||||    
T  43978122 tcggcagttaactgtcgaaggaacttcgatagttaactgcagccgatttcaaacttcggtagttaactaccgcaggggca 43978201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 225 - 335
Target Start/End: Original strand, 7189977 - 7190089
Alignment:
Q  225 tcggtagttaactgcagccgg--ttc-caaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgg 321  Q
    |||| ||||||||||||||||  |||  ||||||||| ||||||||| || ||||||||||| || |||||||||||||||||||||||||||||| |||    
T  7189977 tcggcagttaactgcagccggatttctaaaacttcggcagttaactgccg-aggggcaaaaacgtaatttactcgtgtggcacaaccttatgtaatgtgg 7190075  T
Q  322 gaacagcaattctc 335  Q
    ||||| ||||||||    
T  7190076 gaacatcaattctc 7190089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 39377721 - 39377635
Alignment:
Q  249 caaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    ||||||||| |||||||||  ||||| |||||||| ||||||||||||||||||||| ||||||||||| ||| |||||||||||||    
T  39377721 caaacttcgatagttaactaccgcagaggcaaaaacgtcatttactcgtgtggcacagccttatgtaatgtggaaacagcaattctc 39377635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 202 - 279
Target Start/End: Complemental strand, 43977661 - 43977583
Alignment:
Q  202 ggcagttaactgccgaaggaacttcggtagttaactgcagccgg-ttccaaacttcggtagttaactgtcgcaggggca 279  Q
    |||||||||||||||||| || |||||||||||||||||||||| ||| ||||||||||||||| ||| ||||||||||    
T  43977661 ggcagttaactgccgaagaaatttcggtagttaactgcagccggtttcaaaacttcggtagttagctgccgcaggggca 43977583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 198 - 279
Target Start/End: Complemental strand, 432166 - 432085
Alignment:
Q  198 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggggca 279  Q
    |||||||||||||||| ||||| ||||| | ||||||| |||| ||||||  ||||||||||||||||||||||||||||||    
T  432166 cgtcggcagttaactgtcgaagaaactttgatagttaattgcaaccggttttaaacttcggtagttaactgtcgcaggggca 432085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 198 - 275
Target Start/End: Original strand, 16340546 - 16340623
Alignment:
Q  198 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcagg 275  Q
    ||||||||||||||||||||||   |||| ||||||||||||| ||||||||  ||||||||||||||||| ||||||    
T  16340546 cgtcggcagttaactgccgaagtttcttcagtagttaactgcaaccggttccttacttcggtagttaactgccgcagg 16340623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 225 - 335
Target Start/End: Original strand, 3943218 - 3943330
Alignment:
Q  225 tcggtagttaactgcagccgg--ttc-caaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgg 321  Q
    |||| ||||||||||||||||  |||  ||||||||| ||||||||| || ||| ||||||| ||||||||||||||||||| | |||||| |||| |||    
T  3943218 tcggcagttaactgcagccggatttctaaaacttcggcagttaactgccg-aggagcaaaaacgtcatttactcgtgtggcatagccttatctaatgtgg 3943316  T
Q  322 gaacagcaattctc 335  Q
    ||||| ||||||||    
T  3943317 gaacaacaattctc 3943330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 225 - 335
Target Start/End: Original strand, 23347354 - 23347466
Alignment:
Q  225 tcggtagttaactgcagccgg--ttc-caaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgg 321  Q
    |||||||||||||||||||||  |||  ||||||||| ||||||||| || | ||||||||| ||||||||||||||||||||| ||||||  ||| ||     
T  23347354 tcggtagttaactgcagccggatttctaaaacttcggcagttaactgccg-aagggcaaaaacgtcatttactcgtgtggcacagccttatcaaatgtgt 23347452  T
Q  322 gaacagcaattctc 335  Q
     |||||||||||||    
T  23347453 aaacagcaattctc 23347466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 200 - 268
Target Start/End: Complemental strand, 33667836 - 33667768
Alignment:
Q  200 tcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactg 268  Q
    |||||| |||||||||||||||| |||| ||||||||||||||||||||   | |||||||||||||||    
T  33667836 tcggcacttaactgccgaaggaatttcgatagttaactgcagccggttcattatttcggtagttaactg 33667768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 250 - 312
Target Start/End: Complemental strand, 23346799 - 23346738
Alignment:
Q  250 aaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttat 312  Q
    ||||||||| ||||||||| || |||| |||||| ||||||||||||||||||||||||||||    
T  23346799 aaacttcggcagttaactgccgaaggg-caaaaacgtcatttactcgtgtggcacaaccttat 23346738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 255 - 339
Target Start/End: Original strand, 29093892 - 29093976
Alignment:
Q  255 tcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctcaaaa 339  Q
    |||| ||||||||||||  |||||||||  || | ||||||||||| |||| ||||||||||| |||||||| ||||||| ||||    
T  29093892 tcggcagttaactgtcgagggggcaaaagagtaaattactcgtgtgccacagccttatgtaatgtgggaacaacaattctaaaaa 29093976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 13862989 - 13863027
Alignment:
Q  202 ggcagttaactgccgaaggaacttcggtagttaactgca 240  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  13862989 ggcagttaactgccgaaggaacttcgggagttaactgca 13863027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 271
Target Start/End: Complemental strand, 29600807 - 29600761
Alignment:
Q  225 tcggtagttaactgcagccggttccaaacttcggtagttaactgtcg 271  Q
    |||||||||||||||||||||||||| | ||||| ||||||||||||    
T  29600807 tcggtagttaactgcagccggttccataattcggcagttaactgtcg 29600761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 268
Target Start/End: Complemental strand, 12252166 - 12252123
Alignment:
Q  225 tcggtagttaactgcagccggttccaaacttcggtagttaactg 268  Q
    |||||||||||||||||||||||||| | ||||| |||||||||    
T  12252166 tcggtagttaactgcagccggttccataattcggcagttaactg 12252123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 268
Target Start/End: Original strand, 17913015 - 17913074
Alignment:
Q  209 aactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactg 268  Q
    ||||| ||||| ||||||| || ||||||||||||| ||  |||||||||||||||||||    
T  17913015 aactgtcgaagaaacttcgataattaactgcagccgattttaaacttcggtagttaactg 17913074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 225 - 271
Target Start/End: Original strand, 38340878 - 38340924
Alignment:
Q  225 tcggtagttaactgcagccggttccaaacttcggtagttaactgtcg 271  Q
    |||||||||||||| ||||||||||| | ||||| ||||||||||||    
T  38340878 tcggtagttaactgtagccggttccataattcggcagttaactgtcg 38340924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 3e-50; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 198 - 335
Target Start/End: Original strand, 2532503 - 2532640
Alignment:
Q  198 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgt 297  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |  |||||||| ||||| |||||||||||||    
T  2532503 cgtcggcagttaactgccgaagaaacttcgggagttaactgcagccggttccaaacttcggtagttaattaccgcaggggtaaaaacgtcatttactcgt 2532602  T
Q  298 gtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  2532603 gtggcacagccttatgtaatgtgggaacagcaattctc 2532640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 198 - 335
Target Start/End: Complemental strand, 2532157 - 2532020
Alignment:
Q  198 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgt 297  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||  |||||| ||||||| |||||||||| ||    
T  2532157 cgtcggcagttaactgccgaaggaatttcggtagttaattgcagccggttccaaacttcgatagttaactaccgcaggagcaaaaacgtcatttacttgt 2532058  T
Q  298 gtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    |||||||| ||||||||||| |||||||| ||||||||    
T  2532057 gtggcacagccttatgtaatgtgggaacaacaattctc 2532020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 225 - 337
Target Start/End: Original strand, 35777044 - 35777156
Alignment:
Q  225 tcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaa 324  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||  ||||||    
T  35777044 tcggcagttaactgcagccggttccaaacttcggtagttaactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaacgtgggaa 35777143  T
Q  325 cagcaattctcaa 337  Q
    || ||||||||||    
T  35777144 catcaattctcaa 35777156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 199 - 275
Target Start/End: Original strand, 9070396 - 9070472
Alignment:
Q  199 gtcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcagg 275  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||||||  ||||||||||||||||| ||||||    
T  9070396 gtcggcagttaactgccgaaggaacttcggaagttaactgcagctggttccttacttcggtagttaactgccgcagg 9070472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 225 - 335
Target Start/End: Complemental strand, 7757372 - 7757259
Alignment:
Q  225 tcggtagttaactgcagccgg--ttc-caaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgg 321  Q
    |||| ||||||||||||||||  |||  ||||||||| ||||||||||||  |||||||||| ||||||||||||||||||| |  |||||||||| |||    
T  7757372 tcggcagttaactgcagccggatttctaaaacttcggcagttaactgtcgagggggcaaaaacgtcatttactcgtgtggcatagtcttatgtaatgtgg 7757273  T
Q  322 gaacagcaattctc 335  Q
    ||||||||||||||    
T  7757272 gaacagcaattctc 7757259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 251 - 337
Target Start/End: Original strand, 9784205 - 9784291
Alignment:
Q  251 aacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctcaa 337  Q
    ||||||| |||||||||||||||||||||||||  ||||||| ||||||| |||||| ||||||||| |||||||| ||||||||||    
T  9784205 aacttcgatagttaactgtcgcaggggcaaaaacatcatttattcgtgtgacacaactttatgtaatgtgggaacaacaattctcaa 9784291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 250 - 335
Target Start/End: Original strand, 7762298 - 7762382
Alignment:
Q  250 aaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    ||||||||| ||||||||| || ||||||||||| |||| |||||||||||||||| ||||||||||| |||||||||||||||||    
T  7762298 aaacttcggcagttaactgccg-aggggcaaaaacgtcaattactcgtgtggcacagccttatgtaatgtgggaacagcaattctc 7762382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 198 - 265
Target Start/End: Original strand, 18848014 - 18848081
Alignment:
Q  198 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaa 265  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||  ||||||||||||||||    
T  18848014 cgtcggcagttaactgtcgaaggaacttcggtagttaactgcagtcggttttaaacttcggtagttaa 18848081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 204 - 273
Target Start/End: Original strand, 29413284 - 29413353
Alignment:
Q  204 cagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgca 273  Q
    ||||||| ||||||||||||||||||||||||||||||||  || ||||||||| |||||||||| ||||    
T  29413284 cagttaattgccgaaggaacttcggtagttaactgcagccaatttcaaacttcgatagttaactgccgca 29413353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 225 - 339
Target Start/End: Original strand, 13568101 - 13568218
Alignment:
Q  225 tcggtagttaactgcagccgg-ttccaaact--tcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgg 321  Q
    |||| |||||||||||||||| || |||| |  |||| ||||||||  ||  |||| ||||| ||||||||||||| ||||||| ||||||||||| |||    
T  13568101 tcggcagttaactgcagccggatttcaaattcctcggcagttaactaccgatggggtaaaaacgtcatttactcgtatggcacagccttatgtaatgtgg 13568200  T
Q  322 gaacagcaattctcaaaa 339  Q
    ||||| ||||||||||||    
T  13568201 gaacaacaattctcaaaa 13568218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 225 - 335
Target Start/End: Original strand, 43094602 - 43094715
Alignment:
Q  225 tcggtagttaactgcagccgg--ttc-caaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgg 321  Q
    |||| ||||||||||||||||  |||  ||||||||| ||||||||||||  |||| ||||| ||||||||||||||||||| ||||||||  ||| ||     
T  43094602 tcggcagttaactgcagccggatttctaaaacttcggcagttaactgtcgatggggtaaaaacgtcatttactcgtgtggcataaccttatcaaatgtgt 43094701  T
Q  322 gaacagcaattctc 335  Q
     |||||||||||||    
T  43094702 aaacagcaattctc 43094715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 610 - 679
Target Start/End: Original strand, 12158602 - 12158671
Alignment:
Q  610 gattttgaattcctgggtaataaagctggaaaaccatggcagttccaaacaaacttgtttggaaatggaa 679  Q
    |||||||| ||||| ||||| | ||||||||||||||||| ||| ||||||||||||| |||||||||||    
T  12158602 gattttgagttcctaggtaacatagctggaaaaccatggcggtttcaaacaaacttgtatggaaatggaa 12158671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 11699304 - 11699252
Alignment:
Q  290 ttactcgtgtggcacaaccttatgtaatatgggaacagcaattctcaaaatat 342  Q
    |||||||||||||||||||||||||||| || ||||| |||||||| ||||||    
T  11699304 ttactcgtgtggcacaaccttatgtaatgtgagaacatcaattctctaaatat 11699252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 225 - 340
Target Start/End: Complemental strand, 34122571 - 34122453
Alignment:
Q  225 tcggtagttaactgcagccgg-ttccaaact--tcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgg 321  Q
    |||| |||||||||||||||| || |||| |  |||| ||||||||| || ||||||||||  ||  ||||||  ||||||||||||||||  |||||||    
T  34122571 tcggcagttaactgcagccggatttcaaattcctcggcagttaactgccgaaggggcaaaatcgtattttactaatgtggcacaaccttatcaaatatgg 34122472  T
Q  322 gaacagcaattctcaaaat 340  Q
    ||||| ||||| |||||||    
T  34122471 gaacaacaattttcaaaat 34122453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 254 - 337
Target Start/End: Complemental strand, 43094023 - 43093940
Alignment:
Q  254 ttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctcaa 337  Q
    ||||| |||||||||| | ||||| ||||| |||||||||||||||| |||| ||||||  ||||||  |||| ||||||||||    
T  43094023 ttcggcagttaactgttgaaggggtaaaaacgtcatttactcgtgtgacacagccttatcaaatatgtaaacaacaattctcaa 43093940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 1397414 - 1397486
Alignment:
Q  260 agttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaatt 332  Q
    ||||||||| ||  ||||||||||||| | ||||||||||| |||||||||||  ||| |||||||| |||||    
T  1397414 agttaactgccgagggggcaaaaatgtaaattactcgtgtgccacaaccttatcaaatgtgggaacaacaatt 1397486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 31239775 - 31239819
Alignment:
Q  204 cagttaactgccgaaggaacttcggtagttaactgcagccggttc 248  Q
    |||||||||||||| | |||||||||||||| |||||||||||||    
T  31239775 cagttaactgccgaggaaacttcggtagttatctgcagccggttc 31239819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 274 - 312
Target Start/End: Complemental strand, 31787547 - 31787509
Alignment:
Q  274 ggggcaaaaatgtcatttactcgtgtggcacaaccttat 312  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  31787547 ggggtaaaaatgtcatttactcgtgtggcacagccttat 31787509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 35776755 - 35776714
Alignment:
Q  198 cgtcggcagttaactgccgaaggaacttcggtagttaactgc 239  Q
    |||||||||||||||||| ||| ||||||| |||||||||||    
T  35776755 cgtcggcagttaactgccaaagaaacttcgatagttaactgc 35776714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 3e-47; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 200 - 335
Target Start/End: Original strand, 33304964 - 33305097
Alignment:
Q  200 tcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgt 299  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||| |    
T  33304964 tcggcagttaactgccgaaggaacttcggttgttaactgcagccggttccaaacttcggtagttaactgccgcagggacaaaaacgtcatttactcgtat 33305063  T
Q  300 ggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    ||||||||||||  || | |||||||||||||||||    
T  33305064 ggcacaacctta--tagtgtgggaacagcaattctc 33305097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 225 - 336
Target Start/End: Complemental strand, 5136630 - 5136519
Alignment:
Q  225 tcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaa 324  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||  |||||||||| ||||||    
T  5136630 tcggtagttaactgcagccggttccaaatttcggtagttaactgtcgcaggggcaaaaacgtcatttacttgtgtggcacagtcttatgtaatgtgggaa 5136531  T
Q  325 cagcaattctca 336  Q
    || |||||||||    
T  5136530 caacaattctca 5136519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 225 - 339
Target Start/End: Original strand, 5138296 - 5138410
Alignment:
Q  225 tcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaa 324  Q
    |||| ||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||| || ||||||    
T  5138296 tcggcagttaactgtagctggttccaaacttcggtagttaactgtcgtaggggcaaaaacgtcatttactcgtgtggcacagccttatgtcatgtgggaa 5138395  T
Q  325 cagcaattctcaaaa 339  Q
    |||||||||||||||    
T  5138396 cagcaattctcaaaa 5138410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 199 - 335
Target Start/End: Original strand, 44687454 - 44687588
Alignment:
Q  199 gtcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtg 298  Q
    ||||| ||||||||  ||||||||||||  ||||||||||||||| |||| ||||||||||||||||||||||||| |||||||| |||||||||||  |    
T  44687454 gtcggtagttaactatcgaaggaacttcaatagttaactgcagccagttctaaacttcggtagttaactgtcgcagaggcaaaaacgtcatttactc--g 44687551  T
Q  299 tggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    |||||||| |||||||||| |||||||| ||||||||    
T  44687552 tggcacaatcttatgtaatgtgggaacaacaattctc 44687588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 216 - 335
Target Start/End: Original strand, 1388117 - 1388243
Alignment:
Q  216 gaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactg-------tcgcaggggcaaaaatgtcatttactcgtgtggcacaacc 308  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||       | |||||||||||||||||||||||| |||||||||| ||    
T  1388117 gaaggaacttcggtagttaactgcagccgattccaaacttcggtagttaactgccgcagcttgcaggggcaaaaatgtcatttacttgtgtggcacagcc 1388216  T
Q  309 ttatgtaatatgggaacagcaattctc 335  Q
    ||||||||| |||||||| ||||||||    
T  1388217 ttatgtaatgtgggaacaacaattctc 1388243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 230 - 337
Target Start/End: Complemental strand, 13742788 - 13742681
Alignment:
Q  230 agttaactgcagccggttccaaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagca 329  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| | ||||| |||||||| |||| ||||| |  ||| |||||| |||||||||||    
T  13742788 agttaactgcagccggtttcaaacttcggtagttaactgtcgcaggagtaaaaacgtcatttattcgtatggcatagtcttttgtaatgtgggaacagca 13742689  T
Q  330 attctcaa 337  Q
    ||||||||    
T  13742688 attctcaa 13742681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 200 - 276
Target Start/End: Complemental strand, 54203570 - 54203494
Alignment:
Q  200 tcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggg 276  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| || |||||||    
T  54203570 tcggcagttaactgccgaaggaacttcgggagttaactgcagccggttccaaactttggtagttaattgccgcaggg 54203494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 251 - 335
Target Start/End: Original strand, 13743160 - 13743244
Alignment:
Q  251 aacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||| | ||||| |||||||||| |||||| ||||||||||    
T  13743160 aacttcgggagttaactgtcgcaggggcaaaaacgtcatttactcgtgagacacaatcttatgtaatgtgggaaaagcaattctc 13743244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 200 - 267
Target Start/End: Original strand, 3350017 - 3350084
Alignment:
Q  200 tcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaact 267  Q
    |||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  3350017 tcggcagttaactgtcgaaggaacttcggtagttaactgcagccgatttcaaacttcggtagttaact 3350084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 198 - 279
Target Start/End: Complemental strand, 3349563 - 3349481
Alignment:
Q  198 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccgg-ttccaaacttcggtagttaactgtcgcaggggca 279  Q
    |||||||||||||||||||||| || |||||||||||||||||||||| ||| ||||||||||||||| ||| ||||| ||||    
T  3349563 cgtcggcagttaactgccgaagaaatttcggtagttaactgcagccggtttcaaaacttcggtagttagctgccgcagaggca 3349481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 250 - 335
Target Start/End: Complemental strand, 43476210 - 43476125
Alignment:
Q  250 aaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    ||||||||| ||||||||  ||  |||||||||| ||||||||||||||||||||||||||||||||| || ||||| ||||||||    
T  43476210 aaacttcggcagttaacttccgagggggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgagaacaacaattctc 43476125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 44685933 - 44685870
Alignment:
Q  199 gtcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagt 262  Q
    |||||||||||||||| |||| || |||||||||||||||||||||||| ||||||||||||||    
T  44685933 gtcggcagttaactgctgaagaaatttcggtagttaactgcagccggtttcaaacttcggtagt 44685870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 225 - 335
Target Start/End: Original strand, 43478856 - 43478969
Alignment:
Q  225 tcggtagttaactgcagccgg--ttc-caaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgg 321  Q
    |||| ||||||||||||||||  |||  ||||||| | ||||||||| ||  ||| ||||||  |||||||||||||||||||||||||||||||| |||    
T  43478856 tcggcagttaactgcagccggatttctaaaacttcagcagttaactgccgaggggacaaaaacatcatttactcgtgtggcacaaccttatgtaatgtgg 43478955  T
Q  322 gaacagcaattctc 335  Q
    ||||| ||||||||    
T  43478956 gaacaacaattctc 43478969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 198 - 268
Target Start/End: Complemental strand, 55121666 - 55121596
Alignment:
Q  198 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactg 268  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||||||   | |||||||||||||||    
T  55121666 cgtcggcagttaactgccgaaggaacttcggtagttaaccgcaaccggttcattatttcggtagttaactg 55121596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 275 - 335
Target Start/End: Original strand, 16484535 - 16484595
Alignment:
Q  275 gggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||| ||| ||||||||    
T  16484535 gggcaaaaatgtcatttactcgtgtggcacaaccctatgtaatgtgggtacaacaattctc 16484595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 225 - 337
Target Start/End: Complemental strand, 55385184 - 55385069
Alignment:
Q  225 tcggtagttaactgcagccgg--ttc-caaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgg 321  Q
    |||| ||||||||||||||||  |||  ||||||||| ||||||||| ||  |||||||||| |||| ||||||||||| |||||||||||| ||| |||    
T  55385184 tcggcagttaactgcagccggatttctaaaacttcggcagttaactgccgagggggcaaaaacgtcaattactcgtgtgccacaaccttatgcaatgtgg 55385085  T
Q  322 gaacagcaattctcaa 337  Q
    ||||| ||||| ||||    
T  55385084 gaacaacaattttcaa 55385069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 198 - 271
Target Start/End: Original strand, 55122110 - 55122183
Alignment:
Q  198 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcg 271  Q
    |||||||| |||||||| ||||||||||||| ||||||||||| |||||||   | ||||||||||||||||||    
T  55122110 cgtcggcatttaactgctgaaggaacttcgggagttaactgcaaccggttcattatttcggtagttaactgtcg 55122183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 260 - 336
Target Start/End: Original strand, 48250933 - 48251009
Alignment:
Q  260 agttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctca 336  Q
    ||||||||| ||  |||||||||| |||||||| |  ||||||||||||||||||||| |||||||| |||||||||    
T  48250933 agttaactgccgagggggcaaaaacgtcatttatttatgtggcacaaccttatgtaatgtgggaacaacaattctca 48251009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 217 - 279
Target Start/End: Complemental strand, 1387574 - 1387512
Alignment:
Q  217 aaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggggca 279  Q
    ||||||||||||||||||||||| | |  |||||||||||||||||||||||| |||| ||||    
T  1387574 aaggaacttcggtagttaactgcggtcaattccaaacttcggtagttaactgttgcagaggca 1387512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 291 - 337
Target Start/End: Complemental strand, 8475805 - 8475759
Alignment:
Q  291 tactcgtgtggcacaaccttatgtaatatgggaacagcaattctcaa 337  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||    
T  8475805 tactcgtgtggcacaaccttatgtaatatgtaaacagcaattctcaa 8475759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 250 - 339
Target Start/End: Original strand, 600598 - 600687
Alignment:
Q  250 aaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctcaaaa 339  Q
    ||||||||| ||||||||||||  || ||||||| |||||||||||||||| | || |||| |  ||| |||||||| ||||||||||||    
T  600598 aaacttcggcagttaactgtcgagggcgcaaaaacgtcatttactcgtgtgccgcagccttctacaatgtgggaacaacaattctcaaaa 600687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 218 - 271
Target Start/End: Original strand, 11511295 - 11511348
Alignment:
Q  218 aggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcg 271  Q
    |||||||||||||||||||||||||||||||   | ||||||||||||||||||    
T  11511295 aggaacttcggtagttaactgcagccggttcattatttcggtagttaactgtcg 11511348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 36346411 - 36346370
Alignment:
Q  198 cgtcggcagttaactgccgaaggaacttcggtagttaactgc 239  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  36346411 cgtcggcagttaactgccaaaggaacttcggtagttaactgc 36346370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 50123009 - 50123054
Alignment:
Q  203 gcagttaactgccgaaggaacttcggtagttaactgcagccggttc 248  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||    
T  50123009 gcagttaactgccgaaggaacttctgtagttaactacagccggttc 50123054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 260 - 336
Target Start/End: Original strand, 46993235 - 46993311
Alignment:
Q  260 agttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctca 336  Q
    ||||||||| ||  |||||||||| ||||||||||||| ||||||| ||||||  ||| || |||||||||||||||    
T  46993235 agttaactgccgagggggcaaaaacgtcatttactcgtatggcacagccttatcaaatgtgtgaacagcaattctca 46993311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 225 - 336
Target Start/End: Original strand, 16647173 - 16647287
Alignment:
Q  225 tcggtagttaactgcagccgg--ttc-caaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgg 321  Q
    |||| ||||||||||||||||  |||  |||| |||| ||||||||| ||  |||||||||| ||||  |||||||||| || ||||||||| ||| |||    
T  16647173 tcggcagttaactgcagccggatttctaaaacatcggcagttaactgccgagggggcaaaaacgtcaagtactcgtgtgccagaaccttatgcaatgtgg 16647272  T
Q  322 gaacagcaattctca 336  Q
    ||||| |||||||||    
T  16647273 gaacaacaattctca 16647287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 205 - 268
Target Start/End: Original strand, 18746595 - 18746658
Alignment:
Q  205 agttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactg 268  Q
    |||||||||||||||||| |||||||||||||||| |||| |||   |||||| ||||||||||    
T  18746595 agttaactgccgaaggaatttcggtagttaactgccgccgattctttacttcgatagttaactg 18746658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 274 - 337
Target Start/End: Original strand, 50216932 - 50216995
Alignment:
Q  274 ggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctcaa 337  Q
    |||||||||| |||| ||||||||||| |||||||||||  ||| |||||||| ||||||||||    
T  50216932 ggggcaaaaacgtcaattactcgtgtgccacaaccttatcaaatgtgggaacaacaattctcaa 50216995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 271
Target Start/End: Original strand, 21343520 - 21343566
Alignment:
Q  225 tcggtagttaactgcagccggttccaaacttcggtagttaactgtcg 271  Q
    |||||||||||||||||||||||||| | ||||| ||||||||||||    
T  21343520 tcggtagttaactgcagccggttccataattcggcagttaactgtcg 21343566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 4331914 - 4331962
Alignment:
Q  291 tactcgtgtggcacaaccttatgtaatatgggaacagcaattctcaaaa 339  Q
    ||||||||||||||| ||||||||||| ||  |||||||||||||||||    
T  4331914 tactcgtgtggcacagccttatgtaatgtgtaaacagcaattctcaaaa 4331962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 225 - 269
Target Start/End: Original strand, 11016853 - 11016897
Alignment:
Q  225 tcggtagttaactgcagccggttccaaacttcggtagttaactgt 269  Q
    |||||||||||||||||||||||||| | ||||| ||||||||||    
T  11016853 tcggtagttaactgcagccggttccataattcggcagttaactgt 11016897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 41754427 - 41754387
Alignment:
Q  198 cgtcggcagttaactgccgaaggaacttcggtagttaactg 238  Q
    |||||||||||||||||||||| ||||||| ||||||||||    
T  41754427 cgtcggcagttaactgccgaagaaacttcgatagttaactg 41754387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 288 - 336
Target Start/End: Original strand, 47074202 - 47074250
Alignment:
Q  288 atttactcgtgtggcacaaccttatgtaatatgggaacagcaattctca 336  Q
    |||||||||||||||| ||| |||||||||||| ||||| |||||||||    
T  47074202 atttactcgtgtggcagaacattatgtaatatgagaacaacaattctca 47074250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 268
Target Start/End: Original strand, 40798990 - 40799033
Alignment:
Q  225 tcggtagttaactgcagccggttccaaacttcggtagttaactg 268  Q
    |||||||||||||||||||||||||| | ||||| |||||||||    
T  40798990 tcggtagttaactgcagccggttccataattcggcagttaactg 40799033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 270
Target Start/End: Complemental strand, 50122428 - 50122381
Alignment:
Q  223 cttcggtagttaactgcagccggttccaaacttcggtagttaactgtc 270  Q
    |||||| |||||||||||||||||||  || |||||||||||||||||    
T  50122428 cttcggcagttaactgcagccggttcttaatttcggtagttaactgtc 50122381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 225 - 271
Target Start/End: Original strand, 6144324 - 6144370
Alignment:
Q  225 tcggtagttaactgcagccggttccaaacttcggtagttaactgtcg 271  Q
    |||||||||||||||||||||||||| | ||||| |||||| |||||    
T  6144324 tcggtagttaactgcagccggttccataattcggcagttaattgtcg 6144370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 225 - 267
Target Start/End: Original strand, 32744178 - 32744220
Alignment:
Q  225 tcggtagttaactgcagccggttccaaacttcggtagttaact 267  Q
    |||||||||||||||||||||||||| | ||||| ||||||||    
T  32744178 tcggtagttaactgcagccggttccataattcggcagttaact 32744220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 271
Target Start/End: Complemental strand, 11510310 - 11510237
Alignment:
Q  198 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcg 271  Q
    |||||||| ||||||| ||||||||||||   ||||||||||||| |||||   | ||||||||||||| ||||    
T  11510310 cgtcggcaattaactgtcgaaggaacttcaagagttaactgcagctggttcattatttcggtagttaaccgtcg 11510237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 230 - 271
Target Start/End: Complemental strand, 21342911 - 21342870
Alignment:
Q  230 agttaactgcagccggttccaaacttcggtagttaactgtcg 271  Q
    ||||||||||||||||||||| | ||||| ||||||||||||    
T  21342911 agttaactgcagccggttccataattcggcagttaactgtcg 21342870  T

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Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 46989561 - 46989504
Alignment:
Q  255 tcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttat 312  Q
    |||||||||||||| ||   ||||||||| ||||||||||||| || |||||||||||    
T  46989561 tcggtagttaactgccgagagggcaaaaacgtcatttactcgtatgacacaaccttat 46989504  T

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Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 275 - 336
Target Start/End: Complemental strand, 47070462 - 47070401
Alignment:
Q  275 gggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctca 336  Q
    ||||||||| |||| ||||||||||| ||||  |||||| ||| |||||||| |||||||||    
T  47070462 gggcaaaaacgtcaattactcgtgtgccacagtcttatgcaatgtgggaacaacaattctca 47070401  T

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Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 52387763 - 52387718
Alignment:
Q  291 tactcgtgtggcacaaccttatgtaatatgggaacagcaattctca 336  Q
    ||||| ||||||||||||||||||||| ||  ||||||||||||||    
T  52387763 tactcatgtggcacaaccttatgtaatgtgcaaacagcaattctca 52387718  T

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Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 55282841 - 55282886
Alignment:
Q  225 tcggtagttaactgcagccggttccaaacttcggtagttaactgtc 270  Q
    |||||| ||||||||||||||||||| | ||||| |||||||||||    
T  55282841 tcggtaattaactgcagccggttccataattcggcagttaactgtc 55282886  T

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Target: scaffold0153 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 200 - 279
Target Start/End: Complemental strand, 16962 - 16883
Alignment:
Q  200 tcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgcaggggca 279  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||    
T  16962 tcggcagttaactgccgaagaaacttcggtagttaactgcaaccggttccaaacttcggtagttaactaccgcaggggca 16883  T

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Target: scaffold0153; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 17383 - 17435
Alignment:
Q  216 gaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactg 268  Q
    |||| ||||||||||||||||||||||||||||   | |||||||||||||||    
T  17383 gaagaaacttcggtagttaactgcagccggttcattatttcggtagttaactg 17435  T

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Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 225 - 335
Target Start/End: Complemental strand, 44674211 - 44674099
Alignment:
Q  225 tcggtagttaactgcagccgg--ttcc-aaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgg 321  Q
    |||| ||||||||||||||||  |||  ||||||||| ||||||||| |  ||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  44674211 tcggcagttaactgcagccgggtttcttaaacttcggcagttaactgcca-aggggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgg 44674113  T
Q  322 gaacagcaattctc 335  Q
    ||||| ||||||||    
T  44674112 gaacaacaattctc 44674099  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 255 - 335
Target Start/End: Complemental strand, 37015945 - 37015865
Alignment:
Q  255 tcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    |||| ||||||||| ||  |||||||||||||||||||||| ||||||||| ||||||||||| |||||||| ||||||||    
T  37015945 tcggcagttaactgccgagggggcaaaaatgtcatttactcatgtggcacatccttatgtaatgtgggaacaacaattctc 37015865  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 250 - 338
Target Start/End: Original strand, 39590622 - 39590710
Alignment:
Q  250 aaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctcaaa 338  Q
    ||||||||| ||||||||| ||  ||||||||||  |||||||||||||||||||| |||||| |||| ||| ||||||||||||||||    
T  39590622 aaacttcggcagttaactgccgagggggcaaaaacatcatttactcgtgtggcacagccttatataatgtggaaacagcaattctcaaa 39590710  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 277 - 335
Target Start/End: Complemental strand, 51492064 - 51492006
Alignment:
Q  277 gcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  51492064 gcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattctc 51492006  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 225 - 338
Target Start/End: Original strand, 16984187 - 16984303
Alignment:
Q  225 tcggtagttaactgcagccgg--ttc-caaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgg 321  Q
    |||| ||||||||||||||||  |||  ||||||||| ||||||||| ||  |||| ||||| ||||||||||||||||||||| ||||||  ||| ||     
T  16984187 tcggcagttaactgcagccggatttctaaaacttcggcagttaactgccgagggggtaaaaacgtcatttactcgtgtggcacagccttatcaaatgtgt 16984286  T
Q  322 gaacagcaattctcaaa 338  Q
     ||||||||||||||||    
T  16984287 aaacagcaattctcaaa 16984303  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 255 - 336
Target Start/End: Complemental strand, 39588106 - 39588025
Alignment:
Q  255 tcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctca 336  Q
    |||| ||||||||| ||  |||||||||| |||||||||||||||| |||| ||||||| |||||| ||||| |||||||||    
T  39588106 tcggcagttaactgccgagggggcaaaaacgtcatttactcgtgtgacacatccttatgcaatatgagaacaacaattctca 39588025  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 255 - 335
Target Start/End: Complemental strand, 56138261 - 56138181
Alignment:
Q  255 tcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    |||| |||||||||||| ||||||||||  ||  |||||| |||||||||||||||||  ||| |||||||||||||||||    
T  56138261 tcggcagttaactgtcgaaggggcaaaatcgtattttactagtgtggcacaaccttatcaaatgtgggaacagcaattctc 56138181  T

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Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 198 - 273
Target Start/End: Original strand, 31689022 - 31689097
Alignment:
Q  198 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactgtcgca 273  Q
    ||||||||||||||||||||||||||||||| |||||||| || | | |||   ||||||||||||||||| ||||    
T  31689022 cgtcggcagttaactgccgaaggaacttcgggagttaactacaacagattctttacttcggtagttaactgccgca 31689097  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 40900623 - 40900664
Alignment:
Q  200 tcggcagttaactgccgaaggaacttcggtagttaactgcag 241  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  40900623 tcggcagttaactgccgaaggaacttcggtagttaattgcag 40900664  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 250 - 312
Target Start/End: Complemental strand, 16983541 - 16983479
Alignment:
Q  250 aaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttat 312  Q
    ||||||||| ||||||||| ||  |||| ||||| ||||||||||||||||||||| ||||||    
T  16983541 aaacttcggcagttaactgccgagggggtaaaaacgtcatttactcgtgtggcacagccttat 16983479  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 16473774 - 16473822
Alignment:
Q  291 tactcgtgtggcacaaccttatgtaatatgggaacagcaattctcaaaa 339  Q
    ||||||||||||||||||||||||||| ||  |||||||||||| ||||    
T  16473774 tactcgtgtggcacaaccttatgtaatgtgtaaacagcaattctaaaaa 16473822  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 268
Target Start/End: Original strand, 1736117 - 1736160
Alignment:
Q  225 tcggtagttaactgcagccggttccaaacttcggtagttaactg 268  Q
    |||||||||||||||||||||||||| | ||||| |||||||||    
T  1736117 tcggtagttaactgcagccggttccataattcggcagttaactg 1736160  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 268
Target Start/End: Complemental strand, 12376032 - 12375989
Alignment:
Q  225 tcggtagttaactgcagccggttccaaacttcggtagttaactg 268  Q
    |||||||||||||||||||||||||| | ||||| |||||||||    
T  12376032 tcggtagttaactgcagccggttccataattcggcagttaactg 12375989  T

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Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 268
Target Start/End: Original strand, 36480566 - 36480609
Alignment:
Q  225 tcggtagttaactgcagccggttccaaacttcggtagttaactg 268  Q
    |||||||||||||||||||||||||| | ||||| |||||||||    
T  36480566 tcggtagttaactgcagccggttccataattcggcagttaactg 36480609  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 260 - 335
Target Start/End: Original strand, 50278862 - 50278937
Alignment:
Q  260 agttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    ||||||||||||  ||| |||||| || | ||||||||||| |||||||||||  ||| |||||||| ||||||||    
T  50278862 agttaactgtcgaggggacaaaaacgtaaattactcgtgtgccacaaccttatcaaatgtgggaacaacaattctc 50278937  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 250 - 340
Target Start/End: Complemental strand, 28081477 - 28081388
Alignment:
Q  250 aaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctcaaaat 340  Q
    ||||||||| ||||||||| || |||| |||||| | ||||||||||||||| ||| ||||||  ||| ||  ||||| ||||||||||||    
T  28081477 aaacttcggcagttaactgccgaaggg-caaaaacgccatttactcgtgtggtacagccttatcaaatgtgtaaacagtaattctcaaaat 28081388  T

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Target: scaffold0206 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 288 - 335
Target Start/End: Original strand, 13299 - 13346
Alignment:
Q  288 atttactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    |||||||||||||||||| ||||||||||| ||| |||||||||||||    
T  13299 atttactcgtgtggcacagccttatgtaatgtggaaacagcaattctc 13346  T

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Target: scaffold0184 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 255 - 335
Target Start/End: Complemental strand, 18045 - 17965
Alignment:
Q  255 tcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    |||| ||||||||||||  |||||||||| || | ||||||||||| |||||| ||||  ||| |||||||| ||||||||    
T  18045 tcggcagttaactgtcgagggggcaaaaacgtaaattactcgtgtgccacaactttatcaaatgtgggaacatcaattctc 17965  T

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Target: scaffold0184; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 250 - 338
Target Start/End: Original strand, 18347 - 18435
Alignment:
Q  250 aaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctcaaa 338  Q
    ||||||||| ||||||| | || |||| |||||| |||| ||||| ||||| |||| ||||||| ||  |||||||| |||||||||||    
T  18347 aaacttcggcagttaaccgccgaagggacaaaaacgtcaattacttgtgtgccacatccttatgcaacgtgggaacaacaattctcaaa 18435  T

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Target: scaffold0078 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 250 - 338
Target Start/End: Complemental strand, 54497 - 54409
Alignment:
Q  250 aaacttcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctcaaa 338  Q
    ||||||||| ||||||| | || |||| |||||| |||| ||||| ||||| |||| ||||||| ||  |||||||| |||||||||||    
T  54497 aaacttcggcagttaaccgccgaagggacaaaaacgtcaattacttgtgtgccacatccttatgcaacgtgggaacaacaattctcaaa 54409  T

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Target: scaffold0078; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 255 - 335
Target Start/End: Original strand, 54799 - 54879
Alignment:
Q  255 tcggtagttaactgtcgcaggggcaaaaatgtcatttactcgtgtggcacaaccttatgtaatatgggaacagcaattctc 335  Q
    |||| ||||||||||||  |||||||||| || | ||||||||||| |||||| ||||  ||| |||||||| ||||||||    
T  54799 tcggcagttaactgtcgagggggcaaaaacgtaaattactcgtgtgccacaactttatcaaatgtgggaacatcaattctc 54879  T

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