View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8500_low_20 (Length: 326)
Name: NF8500_low_20
Description: NF8500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8500_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 25 - 308
Target Start/End: Original strand, 29176146 - 29176428
Alignment:
| Q |
25 |
gtacaaatgattgatagttgttaacggtgaccaatgatgtattacaaaatatcaagttaatttaatttccaattaagggccagaacttgacttttgattt |
124 |
Q |
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| T |
29176146 |
gtacaaatgattgatagttgttaacggtgaccaatgatgtattacaaaatatcaagttaatttaatttccaattaagggccagaacttgacttttgatta |
29176245 |
T |
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| Q |
125 |
agtatcttgaaaatatgtcatattagaagagtccataatatttttgatccttgaacaatggttacatctatgactagctgcttaattcatgcatattgat |
224 |
Q |
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| T |
29176246 |
agtatcttgaaaatatgtcatattagaagagtccataata-ttttgatccttgaacaatggttacatctatgattagctgcttaattcatgcatattgat |
29176344 |
T |
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| Q |
225 |
aaatgaaagagcctaatgaaaacctatgaagcacgaacacttattggattaggcgtgtttctgtgttgtacacgatattaatgg |
308 |
Q |
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| T |
29176345 |
aaatgaaagagcctaaagaaaacctatgaagcatgaacacttctcggattaggcgtgtttcggtgtcggatacgatattaatgg |
29176428 |
T |
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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 298
Target Start/End: Original strand, 6898220 - 6898271
Alignment:
| Q |
247 |
cctatgaagcacgaacacttattggattaggcgtgtttctgtgttgtacacg |
298 |
Q |
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| T |
6898220 |
cctatgaagcacgaacactcatcggattaggcgtgtttcggtgttggacacg |
6898271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 4017726 - 4017764
Alignment:
| Q |
245 |
aacctatgaagcacgaacacttattggattaggcgtgtt |
283 |
Q |
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| T |
4017726 |
aacctatgaagcacgaacactttttagattaggcgtgtt |
4017764 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 15796223 - 15796273
Alignment:
| Q |
248 |
ctatgaagcacgaacacttattggattaggcgtgtttctgtgttgtacacg |
298 |
Q |
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| T |
15796223 |
ctatgaagcacgaacactctttggattaggcgtgttccggtgttggacacg |
15796273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 20633592 - 20633556
Alignment:
| Q |
246 |
acctatgaagcacgaacacttattggattaggcgtgt |
282 |
Q |
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| T |
20633592 |
acctatgaagcacgaacactccttggattaggcgtgt |
20633556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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