View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8500_low_21 (Length: 320)
Name: NF8500_low_21
Description: NF8500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8500_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 22 - 319
Target Start/End: Original strand, 27086137 - 27086434
Alignment:
| Q |
22 |
gatggctcagttcttccacttccaagttcaacaattgctctgaagatttgtgatgcgccaaatccgtcacaaatagcatgcgacaaccccattccaattg |
121 |
Q |
| |
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||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27086137 |
gatggctcagttcttcctcttgcaagttcaacaattgctctgaagatttgtgatgcgccaaatccgtcacaaatagcatgcgacaaccccattccaattg |
27086236 |
T |
|
| Q |
122 |
tgaaaccgccacaaagaaattttgtcaccattaacaccaaagggtaacttttatccataggagaaggaatatcaagcaccaagtcttttgcaatatctgt |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27086237 |
tgaaaccgccacaaagaaattttgtcaccattaacaccaaagggtaacttttatccttaggagaaggaatatcaagcaccaagtcttttgcaatttctgt |
27086336 |
T |
|
| Q |
222 |
gtcagtattgtccaagtaatgaagagaagaaagggtgcaattagcatatgcttctaagaatggaacaccatattctgcatcaccaacaccaaactcga |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27086337 |
gtcagtattgtccaagtaatgaagagaagaaagggtgcaattagcatatgcttctaagaatggaacaccatattctgcatcaccaacaccaaactcga |
27086434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 22 - 319
Target Start/End: Original strand, 27041659 - 27041956
Alignment:
| Q |
22 |
gatggctcagttcttccacttccaagttcaacaattgctctgaagatttgtgatgcgccaaatccgtcacaaatagcatgcgacaaccccattccaattg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27041659 |
gatggctcagttcttccacttccaagttcaacaattgctctgaagatttgtgatgcgccaaatccgtcacaaatagcatgcgacaaccccattccaattg |
27041758 |
T |
|
| Q |
122 |
tgaaaccgccacaaagaaattttgtcaccattaacaccaaagggtaacttttatccataggagaaggaatatcaagcaccaagtcttttgcaatatctgt |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27041759 |
tgaaaccgccacaaagaaattttgtcaccattaacaccaaagggtaacttttatccttaggagaaggaatatcaagcaccaagtcttttgcaatttctgt |
27041858 |
T |
|
| Q |
222 |
gtcagtattgtccaagtaatgaagagaagaaagggtgcaattagcatatgcttctaagaatggaacaccatattctgcatcaccaacaccaaactcga |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||| |
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| T |
27041859 |
gtcagtattgtccaagtaatgaagagaagaaagggtgcaattagcatatgcttctaagaatggaacaccatattctgcaccacctagaccaaactcga |
27041956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 20 - 319
Target Start/End: Original strand, 27046076 - 27046375
Alignment:
| Q |
20 |
cagatggctcagttcttccacttccaagttcaacaattgctctgaagatttgtgatgcgccaaatccgtcacaaatagcatgcgacaaccccattccaat |
119 |
Q |
| |
|
|||| |||||| ||||||| || ||||||||| ||||||| |||||| ||| || ||| |||| ||||||| | |||| || ||||||||||||| |
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| T |
27046076 |
cagaaggctcacttcttccttttacaagttcaataattgctttgaagacttgaattgaaccatatccatcacaaacaacatgtgaacaccccattccaat |
27046175 |
T |
|
| Q |
120 |
tgtgaaaccgccacaaagaaattttgtcaccattaacaccaaagggtaacttttatccataggagaaggaatatcaagcaccaagtcttttgcaatatct |
219 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||| || |||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
27046176 |
tgtgaaaccaccacaaataaattttgtcaccatgaataccaaagggtaatttttatcttgaggagaaggaacatcaagcaccaagtcttttgcaatatct |
27046275 |
T |
|
| Q |
220 |
gtgtcagtattgtccaagtaatgaagagaagaaagggtgcaattagcatatgcttctaagaatggaacaccatattctgcatcaccaacaccaaactcga |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
27046276 |
gtgtcagtattgtccaagtaatgaagagaagaaagggtgcaattagcagttgcttctaagaatggaacaccatattctgcaccaccaacaccaaactcga |
27046375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 22 - 297
Target Start/End: Original strand, 27063008 - 27063283
Alignment:
| Q |
22 |
gatggctcagttcttccacttccaagttcaacaattgctctgaagatttgtgatgcgccaaatccgtcacaaatagcatgcgacaaccccattccaattg |
121 |
Q |
| |
|
|||||||| |||||||| ||| ||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
27063008 |
gatggctcggttcttcctcttgcaagttcaagaattgctttgaagaattgtgatgcgccaaatccgtcacaaatagcatgtgacatccccattccaattg |
27063107 |
T |
|
| Q |
122 |
tgaaaccgccacaaagaaattttgtcaccattaacaccaaagggtaacttttatccataggagaaggaatatcaagcaccaagtcttttgcaatatctgt |
221 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||| | ||||||||| ||||| |
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| T |
27063108 |
tgaaaccaccacaaagaaatttcgtcaccattaacaccaaagggtaatttttatcttgaggagaaggaagatcaagcaccaaatgttttgcaatttctgt |
27063207 |
T |
|
| Q |
222 |
gtcagtattgtccaagtaatgaagagaagaaagggtgcaattagcatatgcttctaagaatggaacaccatattct |
297 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||| ||||| |||||| |||||| ||||| ||||| ||| ||||| |
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| T |
27063208 |
gttagtattgtccaggtaatgaagagaagaaagtgtgcagttagcagttgcttccaagaacggaacgccaaattct |
27063283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 20 - 300
Target Start/End: Original strand, 27070079 - 27070359
Alignment:
| Q |
20 |
cagatggctcagttcttccacttccaagttcaacaattgctctgaagatttgtgatgcgccaaatccgtcacaaatagcatgcgacaaccccattccaat |
119 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||| |||| |||||| ||||||||| ||||||||||||||||||||||| |||| |||||||||||| |
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| T |
27070079 |
cagatggctcagttcttcctcttgcaagttcaacaactgctttgaagaattgtgatgcaccaaatccgtcacaaatagcatgtgacatccccattccaat |
27070178 |
T |
|
| Q |
120 |
tgtgaaaccgccacaaagaaattttgtcaccattaacaccaaagggtaacttttatccataggagaaggaatatcaagcaccaagtcttttgcaatatct |
219 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| |||||||||||| | ||||||||| || |
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| T |
27070179 |
tgtgaaaccaccacagagaaattttgtcaccattaacaccaaagggtaatttttatcctgaggagtaggaaaatcaagcaccaaatgttttgcaatttca |
27070278 |
T |
|
| Q |
220 |
gtgtcagtattgtccaagtaatgaagagaagaaagggtgcaattagcatatgcttctaagaatggaacaccatattctgca |
300 |
Q |
| |
|
|||| ||||||||||| ||||||||| |||||||| ||||| |||||| |||||| ||||| ||||| ||| |||||||| |
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| T |
27070279 |
gtgttagtattgtccaggtaatgaagggaagaaagtgtgcagttagcagttgcttccaagaacggaacgccaaattctgca |
27070359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 25 - 293
Target Start/End: Original strand, 27098806 - 27099065
Alignment:
| Q |
25 |
ggctcagttcttccacttccaagttcaacaattgctctgaagatttgtgatgcgccaaatccgtcacaaatagcatgcgacaaccccattccaattgtga |
124 |
Q |
| |
|
|||||| ||||||| ||| ||||||||| || ||| |||||| ||| ||||| |||| ||||||||| ||||| ||| ||| ||||||||| || |||| |
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| T |
27098806 |
ggctcatttcttccccttgcaagttcaatgatcgctttgaagaattgagatgcaccaactccgtcacagatagcgtgcaacacccccattccgatcgtga |
27098905 |
T |
|
| Q |
125 |
aaccgccacaaagaaattttgtcaccattaacaccaaagggtaacttttatccataggagaaggaatatcaagcaccaagtcttttgcaatatctgtgtc |
224 |
Q |
| |
|
|||| ||||||||||||||||||||| | ||||||||||||||| ||| || || |||||||||||| | ||||||||| |||||||| |
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| T |
27098906 |
aacctccacaaagaaattttgtcaccttgaacaccaaagggtaagctttctcttcggg---------atcaagcaccaaatgttttgcaatttctgtgtc |
27098996 |
T |
|
| Q |
225 |
agtattgtccaagtaatgaagagaagaaagggtgcaattagcatatgcttctaagaatggaacaccata |
293 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||| |||||| |||||| ||||||||||||||||| |
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|
| T |
27098997 |
ggtattgtccaagtaattaatagaagaaagggtgcagttagcaattgcttccaagaatggaacaccata |
27099065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 25 - 293
Target Start/End: Original strand, 27105805 - 27106064
Alignment:
| Q |
25 |
ggctcagttcttccacttccaagttcaacaattgctctgaagatttgtgatgcgccaaatccgtcacaaatagcatgcgacaaccccattccaattgtga |
124 |
Q |
| |
|
|||||| ||||||| ||| ||||||||| ||| ||| |||| | ||| ||||| |||| ||||||||| ||||| ||| || ||||||||| ||||||| |
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|
| T |
27105805 |
ggctcatttcttcctcttgcaagttcaataatcgctttgaataattgagatgcaccaactccgtcacagatagcgtgcagcacccccattccgattgtga |
27105904 |
T |
|
| Q |
125 |
aaccgccacaaagaaattttgtcaccattaacaccaaagggtaacttttatccataggagaaggaatatcaagcaccaagtcttttgcaatatctgtgtc |
224 |
Q |
| |
|
|||| |||||| |||||||||||||| | ||||||||||||||| |||| || ||| || |||||||| | ||||||||| |||||||| |
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|
| T |
27105905 |
aacctccacaacgaaattttgtcaccttgaacaccaaagggtaagttttgtcttcagg---------attaagcaccagttgttttgcaatttctgtgtc |
27105995 |
T |
|
| Q |
225 |
agtattgtccaagtaatgaagagaagaaagggtgcaattagcatatgcttctaagaatggaacaccata |
293 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||| |||||| |||||| ||||||||||||||||| |
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|
| T |
27105996 |
ggtattgtccaagtaattaatagaagaaagggtgcagttagcacttgcttccaagaatggaacaccata |
27106064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 25 - 301
Target Start/End: Original strand, 19414814 - 19415090
Alignment:
| Q |
25 |
ggctcagttcttccacttccaagttcaacaattgctctgaagatttgtgatgcgccaaatccgtcacaaatagcatgcgacaaccccattccaattgtga |
124 |
Q |
| |
|
|||||| ||||||| || ||| |||||||||||| |||| | ||| ||||| |||||||| ||||||| ||||| ||||||||||||||||| || | |
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| T |
19414814 |
ggctcatttcttccttttgcaatttcaacaattgcattgaaaaattgagatgcaccaaatccatcacaaacggcatgtgacaaccccattccaatggtta |
19414913 |
T |
|
| Q |
125 |
aaccgccacaaagaaattttgtcaccattaacaccaaagggtaacttttatccataggagaaggaatatcaagcaccaagtcttttgcaatatctgtgtc |
224 |
Q |
| |
|
|| ||||||| ||||| ||| ||||||| |||||| ||||||| ||||| ||| |||||| ||||| |||||| | |||||| | |||||||| |
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|
| T |
19414914 |
tgccaccacaaataaattgtgttaccattaccaccaatgggtaacacttatcttgaggggaaggaggatcaaacaccaattgttttgccacttctgtgtc |
19415013 |
T |
|
| Q |
225 |
agtattgtccaagtaatgaagagaagaaagggtgcaattagcatatgcttctaagaatggaacaccatattctgcat |
301 |
Q |
| |
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| |||||||||||||| ||||||| |||| |||| |||||| |||||| ||||||||||| ||| ||||||||| |
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| T |
19415014 |
tgcattgtccaagtaattaagagaatcaaggctgcagttagcagttgcttccaagaatggaactccaaattctgcat |
19415090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 37 - 164
Target Start/End: Original strand, 20064949 - 20065076
Alignment:
| Q |
37 |
ccacttccaagttcaacaattgctctgaagatttgtgatgcgccaaatccgtcacaaatagcatgcgacaaccccattccaattgtgaaaccgccacaaa |
136 |
Q |
| |
|
|||||| |||||||| ||| |||||| ||| ||| ||||| ||| | || ||||||| | ||| ||||| |||||||||||||||||||| ||||||| |
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|
| T |
20064949 |
ccacttgcaagttcagcaagtgctctatagaattgagatgcaccataaccatcacaaacactatgtgacaatcccattccaattgtgaaaccaccacaaa |
20065048 |
T |
|
| Q |
137 |
gaaattttgtcaccattaacaccaaagg |
164 |
Q |
| |
|
|||| ||||||||| | || |||||||| |
|
|
| T |
20065049 |
gaaactttgtcaccttgaaaaccaaagg |
20065076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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