View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8500_low_26 (Length: 272)
Name: NF8500_low_26
Description: NF8500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8500_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 4266682 - 4266870
Alignment:
| Q |
1 |
tcacaacgcaaatccctcaaggacctcaatggatttttcatccatttccctagaaactcttgctataaaagaacctttgtaccatgaaaaaggtagacat |
100 |
Q |
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| T |
4266682 |
tcacaacgcaaatccctcaaggacctcaatggatttttcatccatttccctagaaactcttgctctaaaagaacctttgtaccatgaaaaaggtagatat |
4266781 |
T |
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| Q |
101 |
ttcattctataaaacctcttactcacgtctatctaaaacttgcttgagcgtcttgagtatttatagatgcatgaaccactcctttgttc |
189 |
Q |
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| T |
4266782 |
ttcattctataaaacctcttactcacgtctatctaaaacttgcttgagcgtcttgagtatttatagatgcatgaaccactcctttgttc |
4266870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 169 - 263
Target Start/End: Original strand, 4266988 - 4267081
Alignment:
| Q |
169 |
gcatgaaccactcctttgttctcccattcgtactcaccaaagtaaaaaccacattatgaagtttatcaacaataagggacaaattaaacaccaaa |
263 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4266988 |
gcatgaaccactcctttgttctcccata-gtactcaccaaagtaaaaaccacattatgaagtttatcaacaataagggacaaattaaacaccaaa |
4267081 |
T |
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