View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8500_low_3 (Length: 682)

Name: NF8500_low_3
Description: NF8500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8500_low_3
NF8500_low_3
[»] chr5 (14 HSPs)
chr5 (148-470)||(4101682-4102022)
chr5 (253-611)||(6431970-6432349)
chr5 (251-611)||(5343299-5343681)
chr5 (251-611)||(32747036-32747419)
chr5 (251-611)||(1709956-1710335)
chr5 (1-156)||(4101022-4101177)
chr5 (251-569)||(24855515-24855854)
chr5 (585-667)||(4102023-4102105)
chr5 (98-243)||(4138504-4138641)
chr5 (16-88)||(4109382-4109454)
chr5 (456-544)||(41615775-41615864)
chr5 (447-541)||(27949123-27949218)
chr5 (258-328)||(41615886-41615956)
chr5 (16-86)||(4132567-4132637)
[»] chr1 (24 HSPs)
chr1 (253-611)||(6605174-6605549)
chr1 (251-611)||(12524467-12524847)
chr1 (251-597)||(39598406-39598772)
chr1 (251-611)||(3474824-3475204)
chr1 (405-611)||(5749468-5749675)
chr1 (405-611)||(10222776-10222983)
chr1 (277-570)||(21191137-21191452)
chr1 (405-611)||(14270826-14271033)
chr1 (405-569)||(10312775-10312940)
chr1 (405-568)||(4851706-4851869)
chr1 (251-399)||(10312966-10313115)
chr1 (251-399)||(22334688-22334837)
chr1 (252-399)||(7199269-7199417)
chr1 (251-395)||(14270650-14270794)
chr1 (405-597)||(7199053-7199242)
chr1 (252-399)||(18277118-18277265)
chr1 (253-354)||(22817314-22817415)
chr1 (447-544)||(7564180-7564279)
chr1 (447-541)||(29251226-29251321)
chr1 (258-399)||(7564369-7564511)
chr1 (292-399)||(10223007-10223116)
chr1 (251-395)||(29250880-29251019)
chr1 (490-544)||(30517870-30517924)
chr1 (405-461)||(22334604-22334660)
[»] chr3 (27 HSPs)
chr3 (251-611)||(41974127-41974508)
chr3 (251-611)||(49326874-49327254)
chr3 (263-610)||(9127237-9127605)
chr3 (263-610)||(9135344-9135712)
chr3 (251-608)||(47374328-47374706)
chr3 (251-604)||(48062376-48062754)
chr3 (251-597)||(8486080-8486448)
chr3 (251-611)||(16483052-16483432)
chr3 (487-667)||(21979386-21979566)
chr3 (487-667)||(22001817-22001997)
chr3 (407-647)||(53394296-53394540)
chr3 (487-645)||(18876559-18876717)
chr3 (405-611)||(30389285-30389493)
chr3 (251-359)||(18876205-18876313)
chr3 (251-395)||(30389110-30389255)
chr3 (253-391)||(49440067-49440206)
chr3 (251-359)||(21449997-21450106)
chr3 (253-395)||(44207382-44207526)
chr3 (405-543)||(44207211-44207350)
chr3 (263-392)||(9119459-9119588)
chr3 (251-335)||(45405500-45405584)
chr3 (296-359)||(21979788-21979850)
chr3 (296-359)||(22002219-22002281)
chr3 (627-667)||(18876722-18876762)
chr3 (627-667)||(53394543-53394583)
chr3 (264-332)||(3733453-3733521)
chr3 (405-447)||(18876378-18876420)
[»] chr7 (16 HSPs)
chr7 (251-611)||(7254950-7255331)
chr7 (251-611)||(35584621-35585002)
chr7 (251-611)||(38264603-38264983)
chr7 (251-611)||(38257028-38257408)
chr7 (253-611)||(26792191-26792570)
chr7 (255-647)||(24687041-24687455)
chr7 (251-611)||(29331842-29332223)
chr7 (405-611)||(15032131-15032338)
chr7 (257-569)||(43748792-43749127)
chr7 (405-611)||(33849145-33849352)
chr7 (251-611)||(45490413-45490795)
chr7 (251-569)||(108896-109234)
chr7 (405-611)||(37999037-37999245)
chr7 (253-359)||(29739031-29739138)
chr7 (253-395)||(37998865-37999007)
chr7 (632-667)||(24686996-24687031)
[»] chr2 (19 HSPs)
chr2 (251-611)||(5463941-5464322)
chr2 (261-604)||(15112910-15113274)
chr2 (250-395)||(41961908-41962053)
chr2 (447-647)||(24168860-24169049)
chr2 (251-328)||(43334010-43334087)
chr2 (447-544)||(5937999-5938097)
chr2 (521-603)||(41962151-41962233)
chr2 (582-667)||(45526691-45526776)
chr2 (447-541)||(18963886-18963981)
chr2 (258-399)||(16739197-16739342)
chr2 (251-392)||(18963537-18963678)
chr2 (258-328)||(34906536-34906606)
chr2 (447-544)||(34948889-34948988)
chr2 (451-544)||(16739010-16739104)
chr2 (261-397)||(5938198-5938335)
chr2 (627-667)||(24169052-24169092)
chr2 (264-399)||(34948664-34948800)
chr2 (405-447)||(18963709-18963751)
chr2 (251-332)||(45526507-45526588)
[»] chr8 (4 HSPs)
chr8 (251-611)||(24830950-24831331)
chr8 (251-611)||(11285-11666)
chr8 (252-548)||(41834896-41835212)
chr8 (255-395)||(42190746-42190885)
[»] chr4 (20 HSPs)
chr4 (251-609)||(52919013-52919394)
chr4 (251-636)||(47985217-47985623)
chr4 (251-611)||(55611944-55612324)
chr4 (251-611)||(44108280-44108659)
chr4 (405-611)||(38990222-38990429)
chr4 (405-611)||(47604138-47604344)
chr4 (256-604)||(45659091-45659458)
chr4 (433-611)||(53269777-53269956)
chr4 (254-522)||(13721548-13721838)
chr4 (405-611)||(40692537-40692744)
chr4 (405-611)||(40761915-40762122)
chr4 (252-548)||(11647907-11648223)
chr4 (405-611)||(53511896-53512103)
chr4 (251-391)||(53511720-53511861)
chr4 (251-328)||(51889303-51889380)
chr4 (251-399)||(53269584-53269731)
chr4 (251-328)||(38990548-38990625)
chr4 (251-309)||(17647385-17647443)
chr4 (251-399)||(40692769-40692920)
chr4 (367-399)||(38990453-38990485)
[»] chr6 (6 HSPs)
chr6 (251-611)||(13037082-13037464)
chr6 (251-590)||(480512-480871)
chr6 (511-667)||(3514030-3514185)
chr6 (251-399)||(34949725-34949874)
chr6 (447-541)||(12304746-12304841)
chr6 (264-402)||(12304873-12305012)
[»] scaffold0168 (2 HSPs)
scaffold0168 (259-557)||(12368-12686)
scaffold0168 (550-611)||(16100-16161)
[»] scaffold0064 (1 HSPs)
scaffold0064 (581-667)||(62438-62524)


Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 148 - 470
Target Start/End: Original strand, 4101682 - 4102022
Alignment:
Q  148 ctcccctttgctggacaggatatccagtatccactaataactttagaatttcagtctatttcacgtagactttattggagaatgaatagaatagacttta 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4101682 ctcccctttgctggacaggatatccagtatccactaataactttagaatttcagtctatttcacgaagactttattggagaatgaatagaatagacttta 4101781  T
Q  248 tgatgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttatttggttcgtttttgttg 347  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  4101782 tgctgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccaaactgcatcagaccctttatttggatcgtttttgttg 4101881  T
Q  348 cgaatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaat------------------ctaaaaccataataacagaaatgatga 429  Q
     |||||||||||       | |||||||| |||||||||||||||||| ||| ||                    |||||||||||||||||||||||||    
T  4101882 tgaatgccttggaaaaaaatggaacaaagatacataacataaatagaaacaacataaaacaaataaacagttaaaaaaaccataataacagaaatgatga 4101981  T
Q  430 attttttgggaagttgttttcaagaggatttctttgagtag 470  Q
    || ||||||||||||||||||||||||||||||| ||||||    
T  4101982 atcttttgggaagttgttttcaagaggatttcttcgagtag 4102022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 253 - 611
Target Start/End: Complemental strand, 6432349 - 6431970
Alignment:
Q  253 agggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcgaa 351  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||| ||| |||||||||||||||||||||||  ||||| ||||||| ||||| |     
T  6432349 agggtttccggattttataatccataatgcatgaagctattccggattgtaaggtccgaactgcatcagacccttttgtttggatcgttttcgttgcaat 6432250  T
Q  352 tgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatgatgaatt 432  Q
    ||||||||       ||||||||||||||||||||||||| ||||||| ||                     |||||||||||||||||||||||||||     
T  6432249 tgccttggaaaaaaatagaacaaaggtacataacataaattgaagcaacataagacaaataaacagttaaaaaaaaccataataacagaaatgatgaatc 6432150  T
Q  433 ttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagca 531  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||    
T  6432149 ttttgggaagatgttttcaagaggatttctttgagttagatcctgctgccttgccaaatgacatattcatctggcaggcagcacaatctaactcatagca 6432050  T
Q  532 acttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 611  Q
    || |||||||||||||||||||||||| ||||||||||||||||| || ||| ||||||||||||| |||||||||||||    
T  6432049 acctcttgatatttttgagttatctatgtatcaaggaggcatcaaggagtatatatatatttttgacagcatgttgagga 6431970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 251 - 611
Target Start/End: Complemental strand, 5343681 - 5343299
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 349  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||  ||||||| |||||     
T  5343681 tgagggttttcggattttataatccggaatgcatgaagctattccggattttaaagtccgaactgcatcagacccttttgtttgaatcgttttcgttgca 5343582  T
Q  350 aatgccttggnnnnnnn-tagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatgatga 429  Q
    ||||||||||        ||||||||||||||||||||||||| ||||||| ||                     ||||||||||||||| |||||||||    
T  5343581 aatgccttggaaaaaaaatagaacaaaggtacataacataaattgaagcaacataagacaaataaacagttaaaaaaaaccataataacataaatgatga 5343482  T
Q  430 attttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcata 528  Q
    || |||||||||| ||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||| |||||| ||||||||||||    
T  5343481 atcttttgggaaggtgttttcaagaggatttctttgagttagatcttgctgccttgccaaatgacatattcatctggcaggcagcaagatctaactcata 5343382  T
Q  529 gcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 611  Q
    ||||| |||||||||||||| ||||||||| ||||||||||||||||| || ||||||||||||||||| |||||||||||||    
T  5343381 gcaacctcttgatatttttgtgttatctatgtatcaaggaggcatcaaggagtatctatatatttttgacagcatgttgagga 5343299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 251 - 611
Target Start/End: Original strand, 32747036 - 32747419
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 349  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||| ||||| ||||||| |||||     
T  32747036 tgagggtttacggattttataatccggaatgcatgaagctattccggattttaaagttcgaacttcatcagaccctttagtttggatcgttttcgttgca 32747135  T
Q  350 aatgccttggnnnnnnn--tagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatgatg 428  Q
    ||||||||||         ||||||||||||||||||||||||| ||||||| ||                     ||||||||||||||||||||||||    
T  32747136 aatgccttggaaaaaaaaatagaacaaaggtacataacataaattgaagcaacataagacaaataaacagttaaaaaaaaccataataacagaaatgatg 32747235  T
Q  429 aattttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcat 527  Q
    ||| |||||||||  ||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||| || ||| |||||||||||    
T  32747236 aatcttttgggaaagtgttttcaagaggatttctttgagttagatcatgctgccttgccaaatgacatattcatctggcaggcaacaagatctaactcat 32747335  T
Q  528 agcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 611  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||| ||||||    
T  32747336 agcaacctcttgatatttttgagttatctatctatcaaggaggcatcaaggagtatctatatatttttgacagcatgctgagga 32747419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 251 - 611
Target Start/End: Complemental strand, 1710335 - 1709956
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 349  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||  ||||| || |||| |||||     
T  1710335 tgagcgtttccggattttataatccggaatgcatgaagctattccggattgtaaagtccgaactgcatcaaacccttttgtttggatcattttcgttgca 1710236  T
Q  350 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagca---------aaatc------taaaa----ccataataacagaaatgatgaa 430  Q
    | ||||||||       ||||||||||||||||||||||||| ||||||         ||||       |||||    ||||||||||||||||||| ||    
T  1710235 attgccttggaaaaa--tagaacaaaggtacataacataaattgaagcagcataagacaaataaacagttaaaaaaacccataataacagaaatgataaa 1710138  T
Q  431 ttttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatag 529  Q
    | |||| ||||| ||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||| |||||  |||||||||| ||    
T  1710137 tcttttaggaaggtgttttcaagaggatttctttgagttagatcctgctgtcttgccaaatgacatattcatctggcaggcagcacgatctaactcaaag 1710038  T
Q  530 caacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 611  Q
    |||| |||| |||||||||||||||||||||| ||||||| |||||| || ||||||||||||||||| | ||||| |||||    
T  1710037 caacctcttaatatttttgagttatctatctaccaaggagacatcaaggagtatctatatatttttgacatcatgtggagga 1709956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 4101022 - 4101177
Alignment:
Q  1 agagacctact-gtggttatcaatagagctattgtgttgaacacaaactttcggttgcacattctcggaccggccttcatctttatttacctccactgtt 99  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  4101022 agagacctacttgtggttatcaatagagctattgtgttgaacacaaactttcggttacacattctcggaccggccttcatctttatttacct-cactgtt 4101120  T
Q  100 tccctcattatgcaaattcttctcactacgagatgctctcgacatattctccccttt 156  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4101121 tcccttattatgcaaattcttctcactacgagatgctcttgacatattctccccttt 4101177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 251 - 569
Target Start/End: Complemental strand, 24855854 - 24855515
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 349  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||| | |||||||||||||| ||||||||||||  ||||| ||||||| |||||     
T  24855854 tgagggtttccgaattttataatcgggaatgcatgaagctattccggaatttaaagtccgaactgtatcagacccttttgtttggatcgttttcgttgca 24855755  T
Q  350 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatgatgaa 430  Q
      ||||| ||       |||||||||| |||||||||||||| ||||||| ||                     ||||||||||||||| ||||||||||    
T  24855754 tttgcctcggaaaaaaatagaacaaagatacataacataaattgaagcaacataagacaaataaatagttaaaaaaaaccataataacataaatgatgaa 24855655  T
Q  431 ttttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatag 529  Q
    | |||||||||  ||||||||||| ||||||| ||||| ||||||||||||||||| ||||||||||||||||||| || |||||| |||||||||||||    
T  24855654 tcttttgggaaaatgttttcaagaagatttctgtgagttagatcctgctgccttgccaaatgacatattcatctggtaggcagcaagatctaactcatag 24855555  T
Q  530 caacttcttgatatttttgagttatctatctatcaaggag 569  Q
    |||| |||||||||||||||||||||||| ||||||||||    
T  24855554 caacctcttgatatttttgagttatctatgtatcaaggag 24855515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 585 - 667
Target Start/End: Original strand, 4102023 - 4102105
Alignment:
Q  585 tatatatttttgaaagcatgttgaggaggttaaccatgttggcacatagagagcaatctattttgcggcagcatgacaaagat 667  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4102023 tatatatttttgaaagcatgttgaggaggttaaccatgttggcacatagagagcaatctattttgcggcagtatgacaaagat 4102105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 98 - 243
Target Start/End: Original strand, 4138504 - 4138641
Alignment:
Q  98 tttccctcattatgcaaattcttctcactacgagatgctctcgacatattctcccctttgctggacaggatatccagtatccactaataactttagaatt 197  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||       |||| || |||||||||||||||    
T  4138504 tttccctcattctgcaaattcttctcactacgagatgctcttgacatattctcccctttgctggacagga-------tatctacaaataactttagaatt 4138596  T
Q  198 tcagtctatttcacgtagactttattggagaatgaatagaatagac 243  Q
    ||||||||||||||  |||||||| ||| |||||||| | ||||||    
T  4138597 tcagtctatttcacaaagacttta-tggggaatgaattgtatagac 4138641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 4109382 - 4109454
Alignment:
Q  16 ttatcaatagagctattgtgttgaacacaaactttcggttgcacattctcggaccggccttcatctttattta 88  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4109382 ttatcaaaagtgctattgtgttgaacacaaactttcggttgcacattctcggaccggccttcatctttattta 4109454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 456 - 544
Target Start/End: Complemental strand, 41615864 - 41615775
Alignment:
Q  456 gatttctttgag-tagatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagcaacttcttgatatt 544  Q
    ||||||| |||| |||||| ||||||||||| ||||||||||||||||||||| ||||||| ||||| ||||||| ||| ||||||||||    
T  41615864 gatttctctgagctagatcttgctgccttgccaaatgacatattcatctggcaaacagcaagatctagctcatagaaacctcttgatatt 41615775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 447 - 541
Target Start/End: Original strand, 27949123 - 27949218
Alignment:
Q  447 tttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagcaacttcttgat 541  Q
    |||||||||||||||||||||| ||||| |||| |||||  ||||||| ||||||||||||||  ||||| ||||||||||||| ||| |||||||    
T  27949123 tttcaagaggatttctttgagttagatcatgcttccttgtcaaatgacttattcatctggcaggaagcaagatctaactcatagaaacctcttgat 27949218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 258 - 328
Target Start/End: Complemental strand, 41615956 - 41615886
Alignment:
Q  258 ttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttt 328  Q
    |||||||||||||||||| ||  |||||||| | || |||||| ||||||| |||||||||||||||||||    
T  41615956 ttccggattttataatcctgatagcatgaagttgtttcggattttaaagtctgaactgcatcagacccttt 41615886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 4132567 - 4132637
Alignment:
Q  16 ttatcaatagagctattgtgttgaacacaaactttcggttgcacattctcggaccggccttcatctttatt 86  Q
    ||||||| ||||| |||||||| |||||||||||||||  |||||||||| |||| | |||| ||||||||    
T  4132567 ttatcaaaagagccattgtgttcaacacaaactttcgggggcacattctcagacctgacttcgtctttatt 4132637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 203; Significance: 1e-110; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 253 - 611
Target Start/End: Complemental strand, 6605549 - 6605174
Alignment:
Q  253 agggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttatttggttcgtttttgttgcgaat 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||| |||    
T  6605549 agggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactacatcagaccctttatttggatcgttttcgttgccaat 6605450  T
Q  353 gccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatctaa-----------------aaccataataacagaaatgatgaattttt 435  Q
    |||||||       ||||||||||||||||||||||||||||||||| ||  ||                 || |||||||||| ||||||||||| |||    
T  6605449 gccttggaaaaaa-tagaacaaaggtacataacataaatagaagcaacataaaacaaataaacagttaaaaaaacataataacataaatgatgaatcttt 6605351  T
Q  436 tgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagcaact 534  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||  |||||||||||||||||     
T  6605350 tgggaaggtgttttcaagaggatttctttgagttagatcctgctgccttgccaaatgacatattcatctggcagtcagcattatctaactcatagcaacc 6605251  T
Q  535 tcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 611  Q
    ||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||| | |||||||||||    
T  6605250 tcttgatatttttgagttatccatctatcaaggaggcatcaaggagtatctatatatttttgacaacatgttgagga 6605174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 251 - 611
Target Start/End: Complemental strand, 12524847 - 12524467
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 349  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||| ||||||| |||||     
T  12524847 tgagggtttctggattttataatccggaatgcatgaagctattccggattttaaagtccgaactgcatcagacccttttgtttggatcgttttcgttgca 12524748  T
Q  350 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatct------------------aaaaccataataacagaaatgatgaat 431  Q
    ||||||||||       ||||||||||||||||||||||||| ||||||| ||                    |||||||||||||||||||||||||||    
T  12524747 aatgccttggaaaaaa-tagaacaaaggtacataacataaattgaagcaacataagacaaataaacagttaaaaaaaccataataacagaaatgatgaat 12524649  T
Q  432 -tttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatag 529  Q
     |||||||||||  |||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||| |||||| |||||||||||||    
T  12524648 ctttttgggaaggagttttcaagaggatttctttgagttagatcctgctgtcttgccaaatgacatattcatctggcaggcagcaagatctaactcatag 12524549  T
Q  530 caacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 611  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||  | ||||||||||||||||| | |||| ||||||    
T  12524548 caacctcttgatatttttgagttatctatgtatcaaggaggcatcaagcagtatctatatatttttgacaacatgctgagga 12524467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 251 - 597
Target Start/End: Original strand, 39598406 - 39598772
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||| ||||||| |||||     
T  39598406 tgagggtttccggattttataatccggaatgcatgaagctattccggattttaaagtccgaactgcatcagacccttttgtttggatcgttttcgttgca 39598505  T
Q  350 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatgatgaa 430  Q
    |||||||||        ||||||||||||||||||||||||| ||||||| ||                     ||||||||||||||||||||||||||    
T  39598506 aatgccttg-aaaaaaatagaacaaaggtacataacataaattgaagcaacatgagaaaaataaacagttaaaaaaaaccataataacagaaatgatgaa 39598604  T
Q  431 ttttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatag 529  Q
    ||||||| |||| ||||||||||||||||||||||||| | ||||||||||||||| |||||| ||||||||||||||  ||||||||| ||||||||||    
T  39598605 ttttttgagaaggtgttttcaagaggatttctttgagttatatcctgctgccttgccaaatgatatattcatctggcaagcagcaaaatttaactcatag 39598704  T
Q  530 caacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttga 597  Q
     ||| |||||||||||||||||||||| | ||||||||||||||||| || |||||||||||||||||    
T  39598705 taacctcttgatatttttgagttatctctgtatcaaggaggcatcaaggagtatctatatatttttga 39598772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 251 - 611
Target Start/End: Complemental strand, 3475204 - 3474824
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta--tttggttcgtttttgttgc 348  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||   ||||| ||||||| |||||    
T  3475204 tgagggtttccggattttataatctggaatgcatgaagctattccggattttaaagtccgaactgcataagacccttttgttttggatcgttttcgttgc 3475105  T
Q  349 gaatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatct------------------aaaaccataataacagaaatgatgaa 430  Q
     |||||||||        ||||||| ||||||||||||||||| ||||||| ||                    ||||||||||| | ||||||||||||    
T  3475104 aaatgccttg-aaaaaaatagaacataggtacataacataaattgaagcaacattagacaaataaacagttaaaaaaaccataatgatagaaatgatgaa 3475006  T
Q  431 ttttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatag 529  Q
    | |||||||||| ||||||||||| ||||||||||||| ||||| || |||||||  ||||||| |||| ||||| |||||| ||| |||||||||||||    
T  3475005 tcttttgggaaggtgttttcaagatgatttctttgagttagatcatgttgccttgtcaaatgacttatttatctgacagacaacaagatctaactcatag 3474906  T
Q  530 caacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 611  Q
    |||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  3474905 caacatcttaatatttttgagttatctctctatcaaggaggcatcaatgaatatctatatatttttgacagcatgctgagga 3474824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 405 - 611
Target Start/End: Complemental strand, 5749675 - 5749468
Alignment:
Q  405 aaaaccataataacagaaatgatgaattttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatct 503  Q
    ||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||    
T  5749675 aaaaccataataacataaatgatgaatcttttgggaaggtgttttcaagaggatttctttgagttagatcctgctgccttgtcaaatgacatattcatct 5749576  T
Q  504 ggcagacagcaaaatctaactcatagcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcat 603  Q
      |||  ||||| |||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||||    
T  5749575 aacaggtagcaagatctaactcataacaacctcttgatatttttgagttatctatgtatcaaggaggcatcaaggagtatctatatatttttgatagcat 5749476  T
Q  604 gttgagga 611  Q
    ||||||||    
T  5749475 gttgagga 5749468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 405 - 611
Target Start/End: Complemental strand, 10222983 - 10222776
Alignment:
Q  405 aaaaccataataacagaaatgatgaattttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatct 503  Q
    |||| |||||| | ||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||    
T  10222983 aaaatcataatgatagaaatgatgaatcttttgggaaggtgttttcaagaggatttctttgagttagatcatgctgccttgccaaatgacatattcatct 10222884  T
Q  504 ggcagacagcaaaatctaactcatagcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcat 603  Q
    | ||  |||||| ||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||  | ||||||||||||||||| |||||    
T  10222883 gacatgcagcaagatctaactcatagcaacctcttgatttttttgagttatctatgtatcaaggaggcatcaagaagtatctatatatttttgacagcat 10222784  T
Q  604 gttgagga 611  Q
    ||||||||    
T  10222783 gttgagga 10222776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 277 - 570
Target Start/End: Original strand, 21191137 - 21191452
Alignment:
Q  277 gaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttatttggttcgtttttgttgcgaatgccttgg-nnnnnnntagaacaaa 375  Q
    ||||||||||||||||| |||||||||||||  |||||||||||||| |||||| ||| ||||||| ||||||||||||||||        |||||||||    
T  21191137 gaatgcatgaagctatttcggattataaagtttgaactgcatcagacgctttatatggatcgttttcgttgcgaatgccttggaaaaaaaatagaacaaa 21191236  T
Q  376 ggtacataacataaatagaagcaaaat-------ctaaa-------------accataataacagaaatgatgaattttttgggaagttgttttcaagag 455  Q
    |||||||||||||||||||||||| ||        ||||             |||||||||||||||||||||||| |||||||||| | ||||||||||    
T  21191237 ggtacataacataaatagaagcaacataagacaaataaacagttaaaaaaaaaccataataacagaaatgatgaatcttttgggaaggtattttcaagag 21191336  T
Q  456 gatttctttgag-tagatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagcaacttcttgatatttttgagttat 554  Q
    ||||| |||| | |||||| ||||||||||| ||||||||||||||||||||||  ||||| ||||||||||||||||| ||||||||||||| ||||||    
T  21191337 gatttatttgcgttagatcatgctgccttgccaaatgacatattcatctggcaggtagcaagatctaactcatagcaacctcttgatattttttagttat 21191436  T
Q  555 ctatctatcaaggagg 570  Q
    ||||||||||||||||    
T  21191437 ctatctatcaaggagg 21191452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 405 - 611
Target Start/End: Original strand, 14270826 - 14271033
Alignment:
Q  405 aaaaccataataacagaaatgatgaattttttgggaagttgttttcaagaggatttctttgagtag-atcctgctgccttgcgaaatgacatattcatct 503  Q
    ||||||||||||||| ||||| ||||| ||| |||||| ||||||||||||||||||||| |||   |||||||| |||||| |||||||||||||||||    
T  14270826 aaaaccataataacataaatgttgaatctttcgggaaggtgttttcaagaggatttctttaagttctatcctgctaccttgccaaatgacatattcatct 14270925  T
Q  504 ggcagacagcaaaatctaactcatagcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcat 603  Q
    ||||| ||| |  ||| ||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||||    
T  14270926 ggcaggcagaaggatcgaactcatagaaacctcttgatatttttgagttatctatatatcaaggaggcatcaaggagtatctatatatttttgacagcat 14271025  T
Q  604 gttgagga 611  Q
    | ||||||    
T  14271026 gctgagga 14271033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 405 - 569
Target Start/End: Complemental strand, 10312940 - 10312775
Alignment:
Q  405 aaaaccataataacagaaatgatgaattttttgggaagttgttttcaagaggatttctttgag-tagatcctgctgccttgcgaaatgacatattcatct 503  Q
    |||| |||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||| ||||| | |||||||||||||||    
T  10312940 aaaaacataataacataaatgatgaatcttttgggaaggtgttttcaagaggatttctttgagctagatcctgctgacttgccacatgacatattcatct 10312841  T
Q  504 ggcagacagcaaaatctaactcatagcaacttcttgatatttttgagttatctatctatcaaggag 569  Q
    |||||||| ||| ||||||||||||||||| |||||||||||||||||||||| | ||||||||||    
T  10312840 ggcagacatcaagatctaactcatagcaacctcttgatatttttgagttatctgtgtatcaaggag 10312775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 405 - 568
Target Start/End: Original strand, 4851706 - 4851869
Alignment:
Q  405 aaaaccataataacagaaatgatgaattttttgggaagttgttttcaagaggatttctttgag-tagatcctgctgccttgcgaaatgacatattcatct 503  Q
    |||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||    
T  4851706 aaaatcataataacagaaatgatgaatcttttgggaaggtgttttcaagaggatttctttgagttagatcatgctgccttgccaaatgacatattcatct 4851805  T
Q  504 ggcagacagcaaaatctaactcatagcaacttcttgatatttttgagttatctatctatcaagga 568  Q
    ||||| || ||| |||||||||||| |||| |||||||| ||||||||||||||| |||||||||    
T  4851806 ggcaggcaacaagatctaactcataacaacctcttgata-ttttgagttatctatgtatcaagga 4851869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 251 - 399
Target Start/End: Complemental strand, 10313115 - 10312966
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccc-tttatttggttcgtttttgttgcg 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||| ||||| ||||||| |||||     
T  10313115 tgagggtttccggattttataatccggaatgcatgaagctattccggattttaaagtctgaactgcatcagacccttttgtttggatcgttttcgttgca 10313016  T
Q  350 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaa 399  Q
    ||||||||||       ||||||||||||||||||||||||| |||||||    
T  10313015 aatgccttggaaaaaaatagaacaaaggtacataacataaattgaagcaa 10312966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 251 - 399
Target Start/End: Complemental strand, 22334837 - 22334688
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccc-tttatttggttcgtttttgttgcg 349  Q
    ||||||||||||||||||||||||| ||||||| |||||||||  ||||| |||||||||||||||||||||||| ||| ||||| ||||||| |||||     
T  22334837 tgagggtttccggattttataatccagaatgcaagaagctattttggattttaaagtccgaactgcatcagacccttttgtttggatcgttttcgttgca 22334738  T
Q  350 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaa 399  Q
    ||||||||||       ||||||||||||||||||||||||| |||||||    
T  22334737 aatgccttggaaaaaaatagaacaaaggtacataacataaattgaagcaa 22334688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 252 - 399
Target Start/End: Complemental strand, 7199417 - 7199269
Alignment:
Q  252 gagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacc-ctttatttggttcgtttttgttgcga 350  Q
    ||||||||||| |||||||||||| |||||||||||||||||||| ||| ||||||| |||||||||||||||  ||| ||||  ||||||||||||| |    
T  7199417 gagggtttccgaattttataatccagaatgcatgaagctattccgaattttaaagtctgaactgcatcagaccattttgtttgaatcgtttttgttgcaa 7199318  T
Q  351 atgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaa 399  Q
    |||||||||       ||||||||||||||||||||||||| |||||||    
T  7199317 atgccttggaaaaaaatagaacaaaggtacataacataaattgaagcaa 7199269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 251 - 395
Target Start/End: Original strand, 14270650 - 14270794
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccc-tttatttggttcgtttttgttgcg 349  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||| ||| ||||| ||||||| |||||     
T  14270650 tgagggtttccggatgttataatccggaatgcatgaagctattccggattttaaagtcaggactgcatcagacccttttgtttggatcgttttcgttgca 14270749  T
Q  350 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaa 395  Q
    ||||||||||       ||||||||||| |||||||||||||||||    
T  14270750 aatgccttgg-aaaaaatagaacaaaggcacataacataaatagaa 14270794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 405 - 597
Target Start/End: Complemental strand, 7199242 - 7199053
Alignment:
Q  405 aaaaccataataacagaaatgatgaattttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatct 503  Q
    ||||||||||||||| |||||||||||  ||||||||| ||||||||||||||||||||||||| ||||| || || || || | ||||   ||  ||||    
T  7199242 aaaaccataataacataaatgatgaatcgtttgggaaggtgttttcaagaggatttctttgagttagatcgtgttgtct-gccagatga---at--atct 7199149  T
Q  504 ggcagacagcaaaatctaactcatagcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatga--atatctatatatttttga 597  Q
    ||||||||| |  |||||||||||| |||| |||||||||||||||||||| | | ||||||||||||||||| ||  |||| |||||||||||||    
T  7199148 ggcagacagtacgatctaactcataacaacctcttgatatttttgagttatatgtgtatcaaggaggcatcaaggagtatatatatatatttttga 7199053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 252 - 399
Target Start/End: Original strand, 18277118 - 18277265
Alignment:
Q  252 gagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccc-tttatttggttcgtttttgttgcga 350  Q
    |||||||| | |||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||| ||| ||| | ||||||| || || |    
T  18277118 gagggttttcagattttataatctggaatgcatgaagctattccggattttaaagtccgaactgtatcagacccttttgtttagatcgttttcgtagcaa 18277217  T
Q  351 atgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaa 399  Q
    |||||||||       ||||||||||| ||||||||||||| |||||||    
T  18277218 atgccttgg-aaaaaatagaacaaaggaacataacataaattgaagcaa 18277265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 253 - 354
Target Start/End: Complemental strand, 22817415 - 22817314
Alignment:
Q  253 agggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttatttggttcgtttttgttgcgaat 352  Q
    ||||||||| ||||||||||||||||| |||||||| |  |||||||| |||| ||||||||||||||| |||||||||||| ||||||| ||| |||||    
T  22817415 agggtttccagattttataatccggaaagcatgaaggtggtccggattgtaaaatccgaactgcatcaggccctttatttggatcgttttcgttacgaat 22817316  T
Q  353 gc 354  Q
    ||    
T  22817315 gc 22817314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 447 - 544
Target Start/End: Complemental strand, 7564279 - 7564180
Alignment:
Q  447 tttcaagaggatttctttgag-tagatcctgctgccttgcgaaatgacatattcatctggcagacagcaa-aatctaactcatagcaacttcttgatatt 544  Q
    |||||||||||||||| |||  |||||||||||||||||| |||||||||||||||||||||| | |||| |||||| ||||||| ||| ||||||||||    
T  7564279 tttcaagaggatttctctgatctagatcctgctgccttgccaaatgacatattcatctggcaggctgcaataatctagctcatagaaacctcttgatatt 7564180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 447 - 541
Target Start/End: Original strand, 29251226 - 29251321
Alignment:
Q  447 tttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagcaacttcttgat 541  Q
    |||||||||||||||||||||| |||||| ||| |||||| ||||||| ||||||| ||||||||| ||| ||||||||||||| ||| |||||||    
T  29251226 tttcaagaggatttctttgagttagatcccgctaccttgccaaatgacttattcatttggcagacaacaagatctaactcatagaaacctcttgat 29251321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 258 - 399
Target Start/End: Complemental strand, 7564511 - 7564369
Alignment:
Q  258 ttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccc-tttatttggttcgtttttgttgcgaatgcct 356  Q
    |||||||||||||||||||||   ||||||| | ||||||||| ||||||||||||| |||||| ||| |||||||||   |||||  | ||||||| ||    
T  7564511 ttccggattttataatccggataacatgaagttgttccggattttaaagtccgaactacatcaggcccttttatttggagtgttttcttggcgaatggct 7564412  T
Q  357 tggnnnnnnntagaacaaaggtacataacataaatagaagcaa 399  Q
    |||       |||||||||||||||||||||||| ||||||||    
T  7564411 tggaaaaaaatagaacaaaggtacataacataaaaagaagcaa 7564369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 292 - 399
Target Start/End: Complemental strand, 10223116 - 10223007
Alignment:
Q  292 ttccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcgaatgccttggnnnnnnn-tagaacaaaggtacataacataa 389  Q
    ||||||||| ||||||| |||||||||||||||||||  ||||| ||||||| ||||| ||||||||||        |||||||||||||||||||||||    
T  10223116 ttccggattttaaagtctgaactgcatcagacccttttgtttggatcgttttcgttgcaaatgccttggaaaaaaaatagaacaaaggtacataacataa 10223017  T
Q  390 atagaagcaa 399  Q
    || |||||||    
T  10223016 attgaagcaa 10223007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 251 - 395
Target Start/End: Original strand, 29250880 - 29251019
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttatttggttcgtttttgttgcga 350  Q
    |||||| |||||||||||||| |  | |||||||| || |  ||||||||||||| ||| |||||||     |||| |||||||  ||||||||| ||||    
T  29250880 tgaggggttccggattttatattttgaaatgcatggagtttgtccggattataaaatccaaactgca-----ccctgtatttggagcgtttttgtggcga 29250974  T
Q  351 atgccttggnnnnnnntagaacaaaggtacataacataaatagaa 395  Q
    |||  ||||       |||||||||||||||||||||||||||||    
T  29250975 atggtttggaaaaaaatagaacaaaggtacataacataaatagaa 29251019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 490 - 544
Target Start/End: Complemental strand, 30517924 - 30517870
Alignment:
Q  490 tgacatattcatctggcagacagcaaaatctaactcatagcaacttcttgatatt 544  Q
    ||||| ||||||||||||| |||||| | ||||||||||| ||| ||||||||||    
T  30517924 tgacaaattcatctggcaggcagcaagaactaactcatagaaacctcttgatatt 30517870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 405 - 461
Target Start/End: Complemental strand, 22334660 - 22334604
Alignment:
Q  405 aaaaccataataacagaaatgatgaattttttgggaagttgttttcaagaggatttc 461  Q
    ||||||||||||||| | ||||||||   ||||||||| ||||| ||||||||||||    
T  22334660 aaaaccataataacatatatgatgaaacatttgggaaggtgtttacaagaggatttc 22334604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 251 - 611
Target Start/End: Complemental strand, 41974508 - 41974127
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||  ||||| ||||||| ||||      
T  41974508 tgagggtttccggattttataatccggaatgcatgaagctattccggattttaaagtccgaactacatcagacccttttgtttggatcgttttcgttgaa 41974409  T
Q  350 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagca---------aaatc------taaaa----ccataataacagaaatgatgaa 430  Q
    ||||||||||       ||||||||||||||||||||||||| ||| ||         ||||       |||||    ||||||||||| ||||||||||    
T  41974408 aatgccttggaaaaaaatagaacaaaggtacataacataaattgaaacaccatgagacaaataaacagttaaaaataaccataataacataaatgatgaa 41974309  T
Q  431 ttttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatag 529  Q
    | |||||||||| ||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  41974308 tcttttgggaaggtgttttcaagaggatttctttgagttagatcttgctgccttgccaaatgacatattcatctggcagacagcaagatctaactcatag 41974209  T
Q  530 caacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 611  Q
    |||| |||||||||||||||||||||| | ||||||||||||||||| || ||||||||||||||||| |||||||||||||    
T  41974208 caacctcttgatatttttgagttatctctgtatcaaggaggcatcaaggagtatctatatatttttgacagcatgttgagga 41974127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 251 - 611
Target Start/End: Complemental strand, 49327254 - 49326874
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 349  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||  ||||| ||||||| |||||     
T  49327254 tgagggtttctggattttataatccggaatgcatgaagctattccgaattttaaagtccgaactgcatcagacccttttgtttggatcgttttcgttgca 49327155  T
Q  350 aatgccttggnnnnnnn-tagaacaaaggtacataacataaatagaagcaaaatct-----------------aaaaccataataacagaaatgatgaat 431  Q
    ||||||||||        ||||| |||||||||||| |||||| ||||||| ||                   ||||||||||||||| |||||||||||    
T  49327154 aatgccttgggaaaaaaatagaataaaggtacataatataaattgaagcaacatgagaaaataaacagttaaaaaaaccataataacataaatgatgaat 49327055  T
Q  432 tttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagc 530  Q
     |||||||||  ||||||||||||||||||||||||| ||||  ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  49327054 cttttgggaatgtgttttcaagaggatttctttgagttagatgttgctgccttgccaaatgacatattcatctggcagacagcaagatctaactcatagc 49326955  T
Q  531 aacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 611  Q
    ||| |||||||||||||||||||||| | ||||||||||||||||| || ||||||||||||||||| | |||| ||||||    
T  49326954 aacctcttgatatttttgagttatctgtgtatcaaggaggcatcaaggagtatctatatatttttgacaacatgatgagga 49326874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 263 - 610
Target Start/End: Original strand, 9127237 - 9127605
Alignment:
Q  263 gattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcgaatgccttggnn 361  Q
    |||||||||||||||||||| ||||| ||||||||||| ||||||  |||||||||||||||||||  ||||| ||||||| ||||| | ||||||||      
T  9127237 gattttataatccggaatgcttgaagttattccggattgtaaagtttgaactgcatcagacccttttgtttggatcgttttcgttgcaattgccttggaa 9127336  T
Q  362 nnnnntagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatgatgaattttttgggaag 442  Q
         ||||||||||||||||||||||||| ||||||| ||                     ||||| ||||||||||||||||||||| ||||||||||    
T  9127337 aaaaatagaacaaaggtacataacataaattgaagcaacataagataaataaacagttaaaaaaaacgataataacagaaatgatgaatcttttgggaag 9127436  T
Q  443 ttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagcaacttcttgat 541  Q
     ||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||| || |||||| ||||||||||||||||| |||||||    
T  9127437 gtgttttcaagaggatttctttgagttagatcatgctgccttgccaaatgacatattcatctggtaggcagcaagatctaactcatagcaacctcttgat 9127536  T
Q  542 atttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagg 610  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||| |||||    
T  9127537 atttttgagttatctatctatcaaggaggcatcaaggagtatctatatatttttgacagcatgatgagg 9127605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 263 - 610
Target Start/End: Original strand, 9135344 - 9135712
Alignment:
Q  263 gattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcgaatgccttggnn 361  Q
    |||||||||||||||||||| ||||| ||||||||||| ||||||  |||||||||||||||||||  ||||| ||||||| ||||| | ||||||||      
T  9135344 gattttataatccggaatgcttgaagttattccggattgtaaagtttgaactgcatcagacccttttgtttggatcgttttcgttgcaattgccttggaa 9135443  T
Q  362 nnnnntagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatgatgaattttttgggaag 442  Q
         ||||||||||||||||||||||||| ||||||| ||                     ||||| ||||||||||||||||||||| ||||||||||    
T  9135444 aaaaatagaacaaaggtacataacataaattgaagcaacataagataaataaacagttaaaaaaaacgataataacagaaatgatgaatcttttgggaag 9135543  T
Q  443 ttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagcaacttcttgat 541  Q
     ||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||| || |||||| ||||||||||||||||| |||||||    
T  9135544 gtgttttcaagaggatttctttgagttagatcatgctgccttgccaaatgacatattcatctggtaggcagcaagatctaactcatagcaacctcttgat 9135643  T
Q  542 atttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagg 610  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||| |||||    
T  9135644 atttttgagttatctatctatcaaggaggcatcaaggagtatctatatatttttgacagcatgatgagg 9135712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 251 - 608
Target Start/End: Complemental strand, 47374706 - 47374328
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 349  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||  ||||| ||||||| ||||      
T  47374706 tgagcgtttccggattttataatccgaaatgcatgaagctattccggattttaaagtccgaactgcatcagaaccttttgtttggatcgttttcgttgta 47374607  T
Q  350 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatc---------------taaaa----ccataataacagaaatgatgaa 430  Q
    | |||||| |       ||||||||||||||| ||||||||| ||| ||| ||                |||||    ||||||||||||||||||||||    
T  47374606 attgccttagaaaaaaatagaacaaaggtacacaacataaattgaaacaacataagacaaatagacagttaaaaaaagccataataacagaaatgatgaa 47374507  T
Q  431 ttttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatag 529  Q
    | |||| ||||| ||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||||||||| ||||||||| |||||||||||||    
T  47374506 tcttttaggaaggtgttttcaagaggatttctttgagttagatcatgttgccttgccaaatgacatattcatctggtagacagcaatatctaactcatag 47374407  T
Q  530 caacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttga 608  Q
    |||| |||| ||||||||||||||||| |||||||||||||||| || || ||||||||||||||||| ||||||||||    
T  47374406 caacctcttaatatttttgagttatctctctatcaaggaggcattaaagagtatctatatatttttgacagcatgttga 47374328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 251 - 604
Target Start/End: Original strand, 48062376 - 48062754
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||  ||||| ||||||| |||||     
T  48062376 tgagggtttccggattttataatccggaatgcatgaagctattccggattttaaagtctgaactgcttcagacccttttgtttggatcgttttcgttgca 48062475  T
Q  350 aatgccttggnnnnnnn----tagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatga 426  Q
    ||||||||||           ||||||||||||||||||||||||| ||||||| ||                     ||||||||||||||| ||||||    
T  48062476 aatgccttggaagaaaaaaaatagaacaaaggtacataacataaattgaagcaacatgagacaaataaacaattaaaaaaaaccataataacataaatga 48062575  T
Q  427 tgaattttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactc 525  Q
    ||||| |||||||||  ||||||||||||||||||||||||| ||||| || || ||||| ||||||||||||||||||||||||||||| ||||||||     
T  48062576 tgaatcttttgggaaagtgttttcaagaggatttctttgagttagatcttgttgtcttgccaaatgacatattcatctggcagacagcaagatctaactt 48062675  T
Q  526 atagcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatg 604  Q
    ||| |||| |||||||||||||||||||||| | ||||||||||||||||| || ||||||||||||||||| ||||||    
T  48062676 ataacaacctcttgatatttttgagttatctgtgtatcaaggaggcatcaaagagtatctatatatttttgacagcatg 48062754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 251 - 597
Target Start/End: Complemental strand, 8486448 - 8486080
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 349  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||| |||||| ||||||||||||||||||||  ||||| ||||||| |||||     
T  8486448 tgagggtttccggattttataatctgaaatgcatgaagctattccggattttaaagtgcgaactgcatcagacccttttgtttggatcgttttcgttgca 8486349  T
Q  350 aatgccttggnnnnnnn-tagaacaaaggtacataacataaatagaagca------------aaatct-------aaaaccataataacagaaatgatga 429  Q
    | ||||||||        ||||||||||||||||||||||||| ||||||            ||| |        ||||||||||||||| |||||||||    
T  8486348 attgccttggaaaaaaaatagaacaaaggtacataacataaattgaagcaacaaaagacaaaaaaacagttaaaaaaaaccataataacataaatgatga 8486249  T
Q  430 attttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcata 528  Q
    || |||||||||  ||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||| |||  |||||||||||||||||||    
T  8486248 atcttttgggaatgtgttttcaagaggatttctttgagttagatcctgctaccttgccaaatgacatattcatctagcatgcagcaaaatctaactcata 8486149  T
Q  529 gcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttga 597  Q
    | ||| | |||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||    
T  8486148 gtaaccttttgatatttttgagttatctatgtatcaaggaggcatcaaggagtatctatatatttttga 8486080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 251 - 611
Target Start/End: Original strand, 16483052 - 16483432
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 349  Q
    ||||| |||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||  ||||| || |||| |||||     
T  16483052 tgaggatttctgaattttataatccggaatgcatgaagctattccggattttaaagtccgaactacatcagacccttttgtttggatcattttcgttgca 16483151  T
Q  350 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatgatgaa 430  Q
    |||||||||        ||||||||||||||||||||||||| ||||||| ||                     |||| |||||||||| ||||||||||    
T  16483152 aatgccttgaaaaaaaatagaacaaaggtacataacataaattgaagcaacatgagacaaataaacaattaaaaaaaatcataataacataaatgatgaa 16483251  T
Q  431 ttttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatag 529  Q
    | |||||||||| ||||||||||||||||||||||| | ||||||||||||||||  ||||||||||||||||| |||| |||||| |||||||||||||    
T  16483252 tcttttgggaagatgttttcaagaggatttctttgacttagatcctgctgccttgtcaaatgacatattcatcttgcaggcagcaagatctaactcatag 16483351  T
Q  530 caacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 611  Q
    |||| ||||||||||||||||||||   |||||||||||| |||||| || ||||||||||||||||| |||||| ||||||    
T  16483352 caacctcttgatatttttgagttat-agtctatcaaggagacatcaaggagtatctatatatttttgacagcatgctgagga 16483432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 487 - 667
Target Start/End: Complemental strand, 21979566 - 21979386
Alignment:
Q  487 aaatgacatattcatctggcagacagcaaaatctaactcatagcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatcta 586  Q
    ||||||||| |||||||||||| |||||| || ||||||||| |||| ||||||||||||| |||||||||||||||||||||||| |||||| ||||||    
T  21979566 aaatgacatgttcatctggcaggcagcaagatataactcataacaacctcttgatatttttaagttatctatctatcaaggaggcagcaatgagtatcta 21979467  T
Q  587 tatatttttgaaagcatgttgaggaggttaaccatgttggcacatagagagcaatctattttgcggcagcatgacaaagat 667  Q
    |||||||||||||||||| ||||||  || |||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  21979466 tatatttttgaaagcatgatgaggatcttcaccatgctggcacatagagagcaatctattttgcggcagcatcacaaagat 21979386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 487 - 667
Target Start/End: Complemental strand, 22001997 - 22001817
Alignment:
Q  487 aaatgacatattcatctggcagacagcaaaatctaactcatagcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatcta 586  Q
    ||||||||| |||||||||||| |||||| || ||||||||| |||| ||||||||||||| |||||||||||||||||||||||| |||||| ||||||    
T  22001997 aaatgacatgttcatctggcaggcagcaagatataactcataacaacctcttgatatttttaagttatctatctatcaaggaggcagcaatgagtatcta 22001898  T
Q  587 tatatttttgaaagcatgttgaggaggttaaccatgttggcacatagagagcaatctattttgcggcagcatgacaaagat 667  Q
    |||||||||||||||||| ||||||  || |||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  22001897 tatatttttgaaagcatgatgaggatcttcaccatgctggcacatagagagcaatctattttgcggcagcatcacaaagat 22001817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 407 - 647
Target Start/End: Original strand, 53394296 - 53394540
Alignment:
Q  407 aaccataataacagaaatgatgaattttttgggaagttgttttcaagaggatttctttgagta-gatcctgctgccttgcgaaatgacatattcatctgg 505  Q
    ||||||||||||| ||||||||||| |||||||||| ||||| ||||||||||| |||||||  |||| || |  ||||| |||||||||||||||||||    
T  53394296 aaccataataacataaatgatgaatcttttgggaaggtgttt-caagaggatttttttgagtttgatcatgttatcttgccaaatgacatattcatctgg 53394394  T
Q  506 cagacagcaaaatctaactcatagcaacttcttgatatttttgagttatc----tatctatcaaggaggcatcaatgaatatctatatatttttgaaagc 601  Q
    ||| |||||| |||||||||||| |||| |||||||||||||||||||||    ||||||| ||||||||| ||| || ||||||||||||||| |||||    
T  53394395 caggcagcaagatctaactcataacaacctcttgatatttttgagttatctatatatctattaaggaggcaacaaggagtatctatatatttttaaaagc 53394494  T
Q  602 atgttgaggaggttaaccatgttggcacatagagagcaatctattt 647  Q
    ||||||||||  || |||||| |||||||||| |||||||||||||    
T  53394495 atgttgaggatcttcaccatgctggcacatagtgagcaatctattt 53394540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 487 - 645
Target Start/End: Original strand, 18876559 - 18876717
Alignment:
Q  487 aaatgacatattcatctggcagacagcaaaatctaactcatagcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatcta 586  Q
    ||||||||| |||||||||||| || ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| || ||||||    
T  18876559 aaatgacatgttcatctggcaggcatcaagatctaactcatagcaacctcttgatatttttgagttatctatctatcaaggaggcaacaaggagtatcta 18876658  T
Q  587 tatatttttgaaagcatgttgaggaggttaaccatgttggcacatagagagcaatctat 645  Q
    |||||||||||||||||| ||||||  || |||||| |||||||||||||| |||||||    
T  18876659 tatatttttgaaagcatgctgaggatcttcaccatgctggcacatagagagaaatctat 18876717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 405 - 611
Target Start/End: Original strand, 30389285 - 30389493
Alignment:
Q  405 aaaaccataataacagaaatgatgaattttttgggaagttgttttcaagaggatttctttgagta-gatcctgctgccttgcgaaatgacatattcatct 503  Q
    ||||||||||||||| ||||| ||||| ||| | | || |||||||||||||||||||||||||  |||| ||||||||||| |||||||||||||||||    
T  30389285 aaaaccataataacataaatgttgaatctttcgtgcaggtgttttcaagaggatttctttgagttcgatcttgctgccttgccaaatgacatattcatct 30389384  T
Q  504 ggcagacagcaaaatctaactcatagcaacttcttgatatttttgagtt-atctatctatcaaggaggcatcaatgaatatctatatatttttgaaagca 602  Q
    || || ||| |  ||| ||||||||| ||| |||||||||||||||||| |||||| ||||||||||||||||| || ||||||||||||||||| ||||    
T  30389385 ggtaggcagaaggatcgaactcatagaaacctcttgatatttttgagttaatctatgtatcaaggaggcatcaaggagtatctatatatttttgacagca 30389484  T
Q  603 tgttgagga 611  Q
    || ||||||    
T  30389485 tgctgagga 30389493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 251 - 359
Target Start/End: Original strand, 18876205 - 18876313
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttatttggttcgtttttgttgcga 350  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||| ||||| |||||||||||||| | |||||||||||||||    
T  18876205 tgagggtttccggattttataatctggaatgcatgaagttattccgaattataaagtccgagctgcaccagaccctttatttagatcgtttttgttgcga 18876304  T
Q  351 atgccttgg 359  Q
    |||||||||    
T  18876305 atgccttgg 18876313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 251 - 395
Target Start/End: Original strand, 30389110 - 30389255
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccc-tttatttggttcgtttttgttgcg 349  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||| |||| ||| ||||| | ||||| |||||     
T  30389110 tgagggtttccggattttataatctggaatgcatgaagctattctggattttaaagtccgaactgcatcaaacccttttgtttggattgttttcgttgca 30389209  T
Q  350 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaa 395  Q
    ||||| ||||       |||||||||||||||||||||||||||||    
T  30389210 aatgctttggaaaaaaatagaacaaaggtacataacataaatagaa 30389255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 253 - 391
Target Start/End: Complemental strand, 49440206 - 49440067
Alignment:
Q  253 agggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccc-tttatttggttcgtttttgttgcgaa 351  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||| ||||| ||||||| ||||| ||    
T  49440206 agggtttccgaattttataatccggaatgcatgaagctattccggattttaaagtccgaattgcatcagacccttttgtttggatcgttttcgttgcaaa 49440107  T
Q  352 tgccttggnnnnnnntagaacaaaggtacataacataaat 391  Q
    ||||||||       | ||||||||||| |||||||||||    
T  49440106 tgccttggaaaaaaattgaacaaaggtagataacataaat 49440067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 251 - 359
Target Start/End: Complemental strand, 21450106 - 21449997
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccc-tttatttggttcgtttttgttgcg 349  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| ||| ||||| ||||||| |||||     
T  21450106 tgagggtttccggattttataatccggaatgcatgaagctagtccggattttaaagtccgaattgcatcagacccttttgtttggatcgttttcgttgca 21450007  T
Q  350 aatgccttgg 359  Q
    ||||||||||    
T  21450006 aatgccttgg 21449997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 253 - 395
Target Start/End: Complemental strand, 44207526 - 44207382
Alignment:
Q  253 agggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccc-tttatttggttcgtttttgttgcgaa 351  Q
    ||||||| ||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||| | |||| ||| ||||| ||||||||||||| ||    
T  44207526 agggttttcggattttataatcctgaatgcatgaagctattccagattttaaagtccgaactgcattatacccttttgtttggatcgtttttgttgcaaa 44207427  T
Q  352 tgccttgg-nnnnnnntagaacaaaggtacataacataaatagaa 395  Q
    ||||||||        |||||||||||||||||| ||||||||||    
T  44207426 tgccttggaaaaaaaatagaacaaaggtacataatataaatagaa 44207382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 405 - 543
Target Start/End: Complemental strand, 44207350 - 44207211
Alignment:
Q  405 aaaaccataataacagaaatgatgaattttttgggaagttgttttcaagaggatttctttgag-tagatcctgctgccttgcgaaatgacatattcatct 503  Q
    ||||||| ||||||| ||||| ||||| |||  ||||| |||||||||||||||||||||||| | |||| ||||||||||| ||||||| |||||||||    
T  44207350 aaaaccaaaataacataaatgttgaatctttcaggaaggtgttttcaagaggatttctttgagttcgatcatgctgccttgccaaatgacttattcatct 44207251  T
Q  504 ggcagacagcaaaatctaactcatagcaacttcttgatat 543  Q
    | ||| ||| |  ||| ||||||||| ||| |||||||||    
T  44207250 gacaggcagaaggatcgaactcatagaaacctcttgatat 44207211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 263 - 392
Target Start/End: Original strand, 9119459 - 9119588
Alignment:
Q  263 gattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagac-cctttatttggttcgtttttgttgcgaatgccttggnn 361  Q
    ||||||||||| |||||||| ||||||||||||||||| ||||||  |||||||||||||| | ||| ||||| ||||||| ||||| | ||||||        
T  9119459 gattttataattcggaatgcttgaagctattccggattgtaaagtttgaactgcatcagactcttttgtttggatcgttttagttgcaattgcctt-aaa 9119557  T
Q  362 nnnnntagaacaaaggtacataacataaata 392  Q
         ||||||||||||||||||||||||||    
T  9119558 aaaaatagaacaaaggtacataacataaata 9119588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 251 - 335
Target Start/End: Complemental strand, 45405584 - 45405500
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttatttggt 335  Q
    |||||||||| ||||| ||||||||||||||||||||| |  ||||||||||||| | |||||  ||||||||||| ||||||||    
T  45405584 tgagggtttctggattatataatccggaatgcatgaagtttgtccggattataaaattcgaacgacatcagaccctatatttggt 45405500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 296 - 359
Target Start/End: Complemental strand, 21979850 - 21979788
Alignment:
Q  296 ggattataaagtccgaactgcatcagaccctttatttggttcgtttttgttgcgaatgccttgg 359  Q
    |||||||||||||||||||||| |||||||||||||||| ||| ||| ||||||||||||||||    
T  21979850 ggattataaagtccgaactgcaccagaccctttatttggatcg-tttcgttgcgaatgccttgg 21979788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 296 - 359
Target Start/End: Complemental strand, 22002281 - 22002219
Alignment:
Q  296 ggattataaagtccgaactgcatcagaccctttatttggttcgtttttgttgcgaatgccttgg 359  Q
    |||||||||||||||||||||| |||||||||||||||| ||| ||| ||||||||||||||||    
T  22002281 ggattataaagtccgaactgcaccagaccctttatttggatcg-tttcgttgcgaatgccttgg 22002219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 627 - 667
Target Start/End: Original strand, 18876722 - 18876762
Alignment:
Q  627 cacatagagagcaatctattttgcggcagcatgacaaagat 667  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  18876722 cacatagagatcaatctattttgcggcagcatgacaaagat 18876762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 627 - 667
Target Start/End: Original strand, 53394543 - 53394583
Alignment:
Q  627 cacatagagagcaatctattttgcggcagcatgacaaagat 667  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  53394543 cacatagagagaaatctattttgcggcagcatgacaaagat 53394583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 264 - 332
Target Start/End: Complemental strand, 3733521 - 3733453
Alignment:
Q  264 attttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttattt 332  Q
    |||||||| |||||||||||||| | |  || |||||||||| ||| |||||||||||||||| |||||    
T  3733521 attttatattccggaatgcatgacgtttatctggattataaaatccaaactgcatcagaccctatattt 3733453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 405 - 447
Target Start/End: Original strand, 18876378 - 18876420
Alignment:
Q  405 aaaaccataataacagaaatgatgaattttttgggaagttgtt 447  Q
    ||||||||||||||| ||||||||||| |||||||||| ||||    
T  18876378 aaaaccataataacataaatgatgaatcttttgggaaggtgtt 18876420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 179; Significance: 3e-96; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 251 - 611
Target Start/End: Complemental strand, 7255331 - 7254950
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 349  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||  ||||| ||||||| |||||     
T  7255331 tgaggatttccggattttataatccggaatgcatgaagctattccggattttaaagttcgaactgcatctgacccttttgtttggatcgttttcgttgca 7255232  T
Q  350 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatgatgaa 430  Q
    |||| |||||       ||||||||||||||||||||||||| ||||||| ||                     ||||||||||||||||||||||||||    
T  7255231 aatgtcttggaaaaaaatagaacaaaggtacataacataaattgaagcaacataagacaaataaacagttaaaaaaaaccataataacagaaatgatgaa 7255132  T
Q  431 ttttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatag 529  Q
    | |||||||||| ||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| || |||||| |||||||||||||    
T  7255131 tcttttgggaagatgttttcaagaggatttctttgagttagatcctgatgccttgccaaatgacatattcatctggtaggcagcaagatctaactcatag 7255032  T
Q  530 caacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 611  Q
    |||  |||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||    
T  7255031 caatatcttaatatttttgagttatctatctatcaaggaggcatcaaggagtatctatatatttttgacagcatgttgagga 7254950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 251 - 611
Target Start/End: Complemental strand, 35585002 - 35584621
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||  ||||| ||||||| |||||     
T  35585002 tgagggtttccggattttataatccggaatgcatgaagctattccggattttaaagtctgaactgcatcagacctttttgtttggatcgttttcgttgca 35584903  T
Q  350 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatgatgaa 430  Q
    ||||||||||       ||||||||||||||||||||||||| ||||||| ||                     ||||||||||||| ||||||||||||    
T  35584902 aatgccttggaaaaaaatagaacaaaggtacataacataaattgaagcaacattagacaaataaacagttaaaaaaaaccataataatagaaatgatgaa 35584803  T
Q  431 ttttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatag 529  Q
    | |||||||||| ||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||| ||||| |||||| |||||||||||||    
T  35584802 tcttttgggaaggtgttttcaagaggatttctttgagttagatcatgctgccttgccaaatgacatattcatccggcaggcagcaagatctaactcatag 35584703  T
Q  530 caacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 611  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| | |||| ||||||    
T  35584702 caacctcttgatatttttgagttatctatgtatcaaggaggcatcaaggagtatctatatatttttgacaacatgatgagga 35584621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 251 - 611
Target Start/End: Complemental strand, 38264983 - 38264603
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||  ||||| ||||||| |||||     
T  38264983 tgagggtttccggattttataatccggaatgcatgaagctattccggattttaaagtccgacctgcatcaaacccttttgtttggatcgttttcgttgca 38264884  T
Q  350 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatct------------------aaaaccataataacagaaatgatgaat 431  Q
    |||||||||        ||||||||||||||||||||||||| ||||||| ||                    |||||||| ||||||||||||||||||    
T  38264883 aatgccttgaaaaaaaatagaacaaaggtacataacataaattgaagcaacataagacaaataaacagttaaaaaaaccatgataacagaaatgatgaat 38264784  T
Q  432 tttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagc 530  Q
     |||||||||| ||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||| || |||||| ||||||||||||||    
T  38264783 cttttgggaagatgttttcaagaggatttctttgagttagatcatgctgccttgccaaatgacatattcatctggaaggcagcaagatctaactcatagc 38264684  T
Q  531 aacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 611  Q
    ||| |||| ||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||||| ||||||    
T  38264683 aacctcttaatatttttgagttatctatgtatcaaggaggcatcaaggagtatctatatatttttgacagcatgctgagga 38264603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 251 - 611
Target Start/End: Complemental strand, 38257408 - 38257028
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||  ||||| ||||||| |||||     
T  38257408 tgagggtttccggattttataatccggaatgcatgaagctattccggattttaaagtccgacctgcatcaaacccttttgtttggatcgttttcgttgca 38257309  T
Q  350 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatct------------------aaaaccataataacagaaatgatgaat 431  Q
    |||||||||        ||||||||||||||||||||||||| ||||||| ||                    |||||||| ||||||||||||||||||    
T  38257308 aatgccttgaaaaaaaatagaacaaaggtacataacataaattgaagcaacataagacaaataaacagttaaaaaaaccatgataacagaaatgatgaat 38257209  T
Q  432 tttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagc 530  Q
     |||||||||| ||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||| || || ||| ||||||||||||||    
T  38257208 cttttgggaagatgttttcaagaggatttctttgagttagatcatgctgccttgccaaatgacatattcatctggaaggcaacaagatctaactcatagc 38257109  T
Q  531 aacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 611  Q
    ||| |||| ||||||||||||||||||| ||||||||||||||||| || ||| ||||||||||||| |||||| ||||||    
T  38257108 aacctcttaatatttttgagttatctatatatcaaggaggcatcaaggagtatatatatatttttgacagcatgctgagga 38257028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 253 - 611
Target Start/End: Original strand, 26792191 - 26792570
Alignment:
Q  253 agggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcgaa 351  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||| ||||||||||||  ||||| | ||||| ||||| ||    
T  26792191 agggtttccggattttataatccggaatgcatgaagctattctggattttaaagtacgaactgtatcagacccttttgtttggattgttttcgttgcaaa 26792290  T
Q  352 tgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatgatgaatt 432  Q
    ||||||||       ||||||||||||||||||||||||| ||||||| ||                     ||||||||||||||| |||||||||||     
T  26792291 tgccttggaaaaaaatagaacaaaggtacataacataaattgaagcaacatgagacaaataaacagttaaaaaaaaccataataacataaatgatgaatc 26792390  T
Q  433 ttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagca 531  Q
    |||||||||| ||||||||||||||||||||||||| ||||||  || |||||| || ||||||||||||| |||||||||||| |||||||||||||||    
T  26792391 ttttgggaaggtgttttcaagaggatttctttgagttagatccatctaccttgccaagtgacatattcatcaggcagacagcaagatctaactcatagca 26792490  T
Q  532 acttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 611  Q
    || |||||||| ||||||||||||| | ||||||||||||||||| || ||||||||||||||||| |||||| ||||||    
T  26792491 acctcttgataattttgagttatctgtgtatcaaggaggcatcaaggagtatctatatatttttgacagcatgctgagga 26792570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 255 - 647
Target Start/End: Complemental strand, 24687455 - 24687041
Alignment:
Q  255 ggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcgaatg 353  Q
    |||||||||||||||||||||| || |||||||| |  | ||||||||||||||||||||||| ||||| ||||  ||||| |||||||  |||||| ||    
T  24687455 ggtttccggattttataatccgaaaagcatgaaggtggttcggattataaagtccgaactgcaccagactcttttgtttggatcgttttcattgcgattg 24687356  T
Q  354 ccttggnnnnnnn-tagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatgatgaattt 433  Q
     |||||        ||||||||||||||||||||||||||||||||| ||                     |||||||||||||||||||||| |||| |    
T  24687355 tcttggaaaaaaaatagaacaaaggtacataacataaatagaagcaacataagacaaataaacagttaaaaaaaaccataataacagaaatgacgaatct 24687256  T
Q  434 tttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagcaa 532  Q
    ||||||||| ||||||||||||||||||||||||| ||||| ||||| ||||| | |||||||||||||||||||| |||||| ||||||||||||||||    
T  24687255 tttgggaaggtgttttcaagaggatttctttgagttagatcttgctggcttgccacatgacatattcatctggcaggcagcaagatctaactcatagcaa 24687156  T
Q  533 cttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgaggaggttaaccatgttggcacata 632  Q
    | |||||||||||||||||||| |||||||||| |||||| ||| || ||||||||||| |||||||||||||||||||  || | |||| |||||||||    
T  24687155 cctcttgatatttttgagttatttatctatcaaagaggcagcaaggagtatctatatatatttgaaagcatgttgaggatcttcatcatgctggcacata 24687056  T
Q  633 gagagcaatctattt 647  Q
    |||||||||||||||    
T  24687055 gagagcaatctattt 24687041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 251 - 611
Target Start/End: Complemental strand, 29332223 - 29331842
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||  ||||||||||||  ||||| | ||||| | |||     
T  29332223 tgagggtttccggattttataatccggaatgcatgaagctattccggattttaaagtctgaactatatcagacccttttgtttggattgttttcgatgca 29332124  T
Q  350 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatgatgaa 430  Q
    |||||||||        ||||||||||||||||||||||||| ||||||| ||                     ||||||||||||||||||||||||||    
T  29332123 aatgccttgaaaaaaaatagaacaaaggtacataacataaattgaagcaacataagacaaataaacggttaaaaaaaaccataataacagaaatgatgaa 29332024  T
Q  431 ttttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatag 529  Q
    | |||||||||| ||||||||||||||||||||||||| ||||| || |||| ||| ||||||||||||||| ||| || |||||| ||||||||||||     
T  29332023 tcttttgggaaggtgttttcaagaggatttctttgagttagatcttgttgccatgccaaatgacatattcatttggtaggcagcaagatctaactcataa 29331924  T
Q  530 caacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 611  Q
    |||  |||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||||| ||||||    
T  29331923 caatctcttgatatttttgagttatctatgtatcaaggaggcatcaaggagtatctatatatttttgacagcatgctgagga 29331842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 405 - 611
Target Start/End: Complemental strand, 15032338 - 15032131
Alignment:
Q  405 aaaaccataataacagaaatgatgaattttttgggaagttgttttcaagaggatttctttgag-tagatcctgctgccttgcgaaatgacatattcatct 503  Q
    ||||||||||||||| |||| |||||| |||||||||| |||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||    
T  15032338 aaaaccataataacataaataatgaatcttttgggaaggtgttttcaagaggatttctttgagctagatcttgctgccttgccaaatgacatattcatct 15032239  T
Q  504 ggcagacagcaaaatctaactcatagcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcat 603  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||| | | ||||||||||||||||| || ||||||||||||||||| |||||    
T  15032238 ggcagacagcaagatctaactcatagcaacctcttgatatttttgagttatatgtgtatcaaggaggcatcaaagagtatctatatatttttgacagcat 15032139  T
Q  604 gttgagga 611  Q
    | ||||||    
T  15032138 gctgagga 15032131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 257 - 569
Target Start/End: Complemental strand, 43749127 - 43748792
Alignment:
Q  257 tttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttt-atttggttcgtttttgttgcgaatgcc 355  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||| |||||| ||||||||||||| ||||||    
T  43749127 tttccggattttataatccggaatgcatgaagctattccagattttaaagtccgaattgcatcagacccttttatttggatcgtttttgttgcaaatgcc 43749028  T
Q  356 ttggnnnnnnn---tagaacaaaggtacataacataaatagaagcaaaatct------------------aaaaccataataacagaaatgatgaatttt 434  Q
    ||||          ||||||||||||||||||||||||| ||||||| ||                    ||||||||||||||| ||||||||||| ||    
T  43749027 ttggaaaaaaaaaatagaacaaaggtacataacataaattgaagcaacataagacaaataaacagttaaaaaaaccataataacataaatgatgaatctt 43748928  T
Q  435 ttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagcaac 533  Q
    |||||||| ||||| ||||||||||||||||||| ||||| || |||||||| ||||||||||||||| || |||||| ||  |||||||||||||||||    
T  43748927 ttgggaagatgtttccaagaggatttctttgagttagatcatgttgccttgccaaatgacatattcatttgacagacaacaggatctaactcatagcaac 43748828  T
Q  534 ttcttgatatttttgagttatctatctatcaaggag 569  Q
     |||||||||||||||||||||||| ||||||||||    
T  43748827 ctcttgatatttttgagttatctatgtatcaaggag 43748792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 405 - 611
Target Start/End: Original strand, 33849145 - 33849352
Alignment:
Q  405 aaaaccataataacagaaatgatgaattttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatct 503  Q
    |||| |||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||| | ||| ||||||||||| | |||||||||||||||    
T  33849145 aaaatcataataacagaaatgatgaatcttttgggaatgtgttttcaagaggatttctttgagttaaatcatgctgccttgccacatgacatattcatct 33849244  T
Q  504 ggcagacagcaaaatctaactcatagcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcat 603  Q
    ||||| |||||  ||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||| || ||||||||||||||||| |||||    
T  33849245 ggcaggcagcacgatctaactcatagcaacctcttgatatttttgagttatctatgtatcaaagaggcatcaaggagtatctatatatttttgatagcat 33849344  T
Q  604 gttgagga 611  Q
    ||||||||    
T  33849345 gttgagga 33849352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 251 - 611
Target Start/End: Original strand, 45490413 - 45490795
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccc-tttatttggttcgtttttgttgcg 349  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||| ||||| || |||| |||||     
T  45490413 tgagggtttccggatgttataatccggaatgcatgaagctattccggattttaaagtccaaactgcatcagacccttttgtttggatcattttcgttgca 45490512  T
Q  350 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaat-------ctaaa-------------accataataacagaaatgatga 429  Q
    |||| |||||       |||||||||||| |||||||||||||||| ||| ||        ||||             |||||||||||| ||||| |||    
T  45490513 aatgtcttggaaaaaaatagaacaaaggtgcataacataaatagaatcaacataagacaaataaacagttgaaaaaaaaccataataacataaatgttga 45490612  T
Q  430 attttttgggaagttgttttcaagaggatttctttgag-tagatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcata 528  Q
    || ||| |||||| || ||||||||||||||||||||| | |||||||||  ||||| |||||||||||||||||||||| ||| |  ||| ||||||||    
T  45490613 atctttcgggaagatgatttcaagaggatttctttgagttcgatcctgctatcttgccaaatgacatattcatctggcaggcagaaggatcgaactcata 45490712  T
Q  529 gcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 611  Q
    | ||| ||||||||||||||| |||||||| ||||||||||||||||| || ||||||||||||||||| |||||| ||||||    
T  45490713 gaaacctcttgatatttttgacttatctatgtatcaaggaggcatcaaggagtatctatatatttttgacagcatgctgagga 45490795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 251 - 569
Target Start/End: Original strand, 108896 - 109234
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 349  Q
    ||||||||||| |||||||||||| |||||||||||||||||| | |||| |||||||| |||||||||| |||||||  ||||| ||||||| |||||     
T  108896 tgagggtttccagattttataatctggaatgcatgaagctatttcagattttaaagtcccaactgcatcaaacccttttgtttggatcgttttcgttgca 108995  T
Q  350 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatct------------------aaaaccataataacagaaatgatgaat 431  Q
    ||| ||||||       ||||||||||||||||||||||||| ||||||| ||                    ||||||| |||||||||||||||||||    
T  108996 aattccttggaaaaaaatagaacaaaggtacataacataaatggaagcaacataagacaaataaacagttaaaaaaaccacaataacagaaatgatgaat 109095  T
Q  432 tttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagc 530  Q
     |||||||||| |||||||||||| |||||||| ||| ||||| ||||  ||||| ||||||||||||||||| |||| |||||| |||||||||||| |    
T  109096 cttttgggaagatgttttcaagagaatttctttaagttagatcatgctatcttgccaaatgacatattcatctagcaggcagcaagatctaactcataac 109195  T
Q  531 aacttcttgatatttttgagttatctatctatcaaggag 569  Q
    ||| |||||||||||||||||||| ||| ||||||||||    
T  109196 aacctcttgatatttttgagttatatatgtatcaaggag 109234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 405 - 611
Target Start/End: Original strand, 37999037 - 37999245
Alignment:
Q  405 aaaaccataataacagaaatgatgaattttttgggaagttgttttcaagaggatttctttgag-tagatcctgctgccttgcgaaatgacatattcatct 503  Q
    ||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||| |||||| | |||||||||||||||| |||||||||||||||||    
T  37999037 aaaaccataataacagaaatgttgaatcttttgggaaggtgttttcaagaggatttatttgagttcgatcctgctgccttgccaaatgacatattcatct 37999136  T
Q  504 ggcagacagcaaaatctaactcatagcaa-cttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagca 602  Q
    ||||| ||| |  ||| ||||||||| || | ||||||||||||||||||| |||| ||| ||||||||||||| || ||||||||||||||||| | ||    
T  37999137 ggcaggcagaaggatcgaactcatagaaatcctcttgatatttttgagttaactatgtatgaaggaggcatcaaagagtatctatatatttttgacaaca 37999236  T
Q  603 tgttgagga 611  Q
    || ||||||    
T  37999237 tgctgagga 37999245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 253 - 359
Target Start/End: Complemental strand, 29739138 - 29739031
Alignment:
Q  253 agggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacc-ctttatttggttcgtttttgttgcgaa 351  Q
    |||||||| |||||||||||||| |||||||||||| |||| |||||| |||||||| ||||||||||||||  ||| ||||| ||||||| ||||| ||    
T  29739138 agggtttctggattttataatccagaatgcatgaagatatttcggattttaaagtccaaactgcatcagacctttttgtttggatcgttttcgttgcaaa 29739039  T
Q  352 tgccttgg 359  Q
    ||||||||    
T  29739038 tgccttgg 29739031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 253 - 395
Target Start/End: Original strand, 37998865 - 37999007
Alignment:
Q  253 agggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccc-tttatttggttcgtttttgttgcgaa 351  Q
    |||||||| ||||||||||||||||||||||||||| |  ||| ||||||||||   |||| ||||||||||| ||| ||||  ||||||| ||||||||    
T  37998865 agggtttctggattttataatccggaatgcatgaaggtggtccagattataaagatggaaccgcatcagacccttttttttgaatcgttttcgttgcgaa 37998964  T
Q  352 tgccttggnnnnnnntagaacaaaggtacataacataaatagaa 395  Q
    ||||||         |||||||||||||||||||||||||||||    
T  37998965 tgcctt-aaaaaaaatagaacaaaggtacataacataaatagaa 37999007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 632 - 667
Target Start/End: Complemental strand, 24687031 - 24686996
Alignment:
Q  632 agagagcaatctattttgcggcagcatgacaaagat 667  Q
    |||||||||||||||||||| |||||||||||||||    
T  24687031 agagagcaatctattttgcgacagcatgacaaagat 24686996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 179; Significance: 3e-96; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 251 - 611
Target Start/End: Complemental strand, 5464322 - 5463941
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccc-tttatttggttcgtttttgttgcg 349  Q
    |||||||||||||||||||||||| ||||||||||||||||||||  ||| |||||||||||||||||||||||| ||| ||||| ||||||| |||||     
T  5464322 tgagggtttccggattttataatctggaatgcatgaagctattccaaattttaaagtccgaactgcatcagacccttttgtttggatcgttttcgttgca 5464223  T
Q  350 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaat-------ctaaa-------------accataataacagaaatgatga 429  Q
    ||||||||||       ||||||||||||||| |||||| || ||||||| ||        ||||             ||||||||||||||||||||||    
T  5464222 aatgccttgg-aaaaaatagaacaaaggtacacaacatagattgaagcaacataagacaaataaacagttaaaaaaaaaccataataacagaaatgatga 5464124  T
Q  430 attttttgggaagttgttttcaagaggatttctttgag-tagatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcata 528  Q
    || |||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||    
T  5464123 atcttttgggaaggtgttttcaagaggatttctttgagttagatcctgctgccttgccaaatgacatattcatctggcaggcagcaagatctaactcata 5464024  T
Q  529 gcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 611  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||    
T  5464023 gcaacctcttaatatttttgagttatctatctatcaaggaggcatcaatgagtatctatatatttttgacagcatgctgagga 5463941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 261 - 604
Target Start/End: Complemental strand, 15113274 - 15112910
Alignment:
Q  261 cggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttattt--ggttcgtttttgttgcgaatgccttg 358  Q
    ||||||||||||||  |||||| ||||||||||||||||| ||||||| ||||||||||| ||||||| |||  || ||||||| |||||||||||||||    
T  15113274 cggattttataatctagaatgcttgaagctattccggattgtaaagtctgaactgcatcataccctttttttttggatcgttttcgttgcgaatgccttg 15113175  T
Q  359 gnnnnnnntagaacaaaggtacataacataaatagaagcaaaatct------------------aaaaccataataacagaaatgatgaattttttggga 440  Q
    |       ||||||||||||||||||||||||||||||||| ||                    ||| | ||||||||| ||||||||||| ||||| ||    
T  15113174 gaaaaaaatagaacaaaggtacataacataaatagaagcaacataagacaaataaacagtgaaaaaagcaataataacaaaaatgatgaatcttttgaga 15113075  T
Q  441 agttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagcaacttcttg 539  Q
    |||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||| |||||| |||||||||||| |||| |||||    
T  15113074 agttgttttcaagaggatttctttgagttagatcctgctgccttaccaaatgacatattcatctggcaggcagcaagatctaactcataacaacctcttg 15112975  T
Q  540 atatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatg 604  Q
    |||||||||| |||||||| ||||||||||||||||| || ||||||||||||||||||||||||    
T  15112974 atatttttgacttatctatgtatcaaggaggcatcaaagagtatctatatatttttgaaagcatg 15112910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 250 - 395
Target Start/End: Original strand, 41961908 - 41962053
Alignment:
Q  250 atgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttatttggttcgtttttgttgcg 349  Q
    ||||||||||||||||| || |||||||||||||||||| |  |||||||| ||||||||||||  ||||||||||||| ||||| ||||||| ||||||    
T  41961908 atgagggtttccggattataaaatccggaatgcatgaaggtggtccggattgtaaagtccgaaccacatcagaccctttttttggatcgttttcgttgcg 41962007  T
Q  350 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaa 395  Q
    ||||||||||       |||||||||||||||||||||||||||||    
T  41962008 aatgccttggaaaaaaatagaacaaaggtacataacataaatagaa 41962053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 447 - 647
Target Start/End: Original strand, 24168860 - 24169049
Alignment:
Q  447 tttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagcaacttcttgatattt 545  Q
    ||||||||| |||||||||||| ||||||| ||||||||| || ||||||||| ||||||||| |||||| |||||||||||| |||| |||||||||||    
T  24168860 tttcaagagaatttctttgagttagatcctactgccttgccaa-tgacatatttatctggcaggcagcaagatctaactcataacaacctcttgatattt 24168958  T
Q  546 ttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgaggaggttaaccatgttggcacatagagagcaatctat 645  Q
    ||||||||||||||||  ||||||           || ||||||||||||||||||||| ||||||  || |||| | ||||||||||||||||||| ||    
T  24168959 ttgagttatctatctaataaggag-----------taactatatatttttgaaagcatgctgaggatcttcaccaggctggcacatagagagcaatcgat 24169047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 251 - 328
Target Start/End: Original strand, 43334010 - 43334087
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttt 328  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  43334010 tgagggtttccagattttataatccggaatgcatgaagctattccagattttaaagtccgaactgcatcagacccttt 43334087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 447 - 544
Target Start/End: Complemental strand, 5938097 - 5937999
Alignment:
Q  447 tttcaagaggatttctttgag-tagatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagcaacttcttgatatt 544  Q
    |||||||||||||||| |||| |||||||||||||||||| ||||||||||||||| ||||||  ||||| ||||||||||||| ||| ||||||||||    
T  5938097 tttcaagaggatttctctgagctagatcctgctgccttgccaaatgacatattcatgtggcagggagcaagatctaactcatagaaacctcttgatatt 5937999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 521 - 603
Target Start/End: Original strand, 41962151 - 41962233
Alignment:
Q  521 aactcatagcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcat 603  Q
    ||||||||| ||  |||||||||||||||||||||||| |||||||||||||||||  | ||||||||||||||||| |||||    
T  41962151 aactcatagaaagctcttgatatttttgagttatctatgtatcaaggaggcatcaagcagtatctatatatttttgacagcat 41962233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 582 - 667
Target Start/End: Original strand, 45526691 - 45526776
Alignment:
Q  582 atctatatatttttgaaagcatgttgaggaggttaaccatgttggcacatagagagcaatctattttgcggcagcatgacaaagat 667  Q
    |||| |||||||||||||||||| ||||||  || |||||| ||| |  |||||||||||||||||||||||||||||||||||||    
T  45526691 atctttatatttttgaaagcatgctgaggatcttcaccatgctggtagttagagagcaatctattttgcggcagcatgacaaagat 45526776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 447 - 541
Target Start/End: Original strand, 18963886 - 18963981
Alignment:
Q  447 tttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagcaacttcttgat 541  Q
    |||||||||||||||||||||| ||||||||||  ||||| ||||||| ||||||||||||||  || || ||||||||||||| ||| |||||||    
T  18963886 tttcaagaggatttctttgagttagatcctgctctcttgccaaatgacttattcatctggcaggaagtaagatctaactcatagaaacctcttgat 18963981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 258 - 399
Target Start/End: Complemental strand, 16739342 - 16739197
Alignment:
Q  258 ttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatca-gaccctttatttggttcgtttttgttgcgaatgcct 356  Q
    |||||||||||||||||||||  ||||| || | ||||||||| ||||||||||||||||||| | || |||||||||  ||||||  | ||||||| ||    
T  16739342 ttccggattttataatccggatagcatgtagttgttccggattttaaagtccgaactgcatcaggtccttttatttggagcgttttcttggcgaatggct 16739243  T
Q  357 tgg---nnnnnnntagaacaaaggtacataacataaatagaagcaa 399  Q
    |||          |||||||||||||||||||||||||||||||||    
T  16739242 tggaaaaaaaaaatagaacaaaggtacataacataaatagaagcaa 16739197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 251 - 392
Target Start/End: Original strand, 18963537 - 18963678
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttatttggttcgtttttgttgcga 350  Q
    |||||| |||| ||||||||| |||||||||||||||| |  || |||||||||| |||||||||||||| ||||| |||||||  | |||| || || |    
T  18963537 tgaggggttccagattttatattccggaatgcatgaagtttgtctggattataaaatccgaactgcatcacaccctgtatttggagccttttcgtggcaa 18963636  T
Q  351 atgccttggnnnnnnntagaacaaaggtacataacataaata 392  Q
    ||| |||||       || ||||||||| |||||||||||||    
T  18963637 atggcttggaaaaatataaaacaaaggtgcataacataaata 18963678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 258 - 328
Target Start/End: Original strand, 34906536 - 34906606
Alignment:
Q  258 ttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttt 328  Q
    |||||||||||||||||||||  |||||||| | ||||||||| ||||||| |||||||||||| ||||||    
T  34906536 ttccggattttataatccggatagcatgaagttgttccggattgtaaagtctgaactgcatcaggcccttt 34906606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 447 - 544
Target Start/End: Original strand, 34948889 - 34948988
Alignment:
Q  447 tttcaagaggatttctttgag-tag-atcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagcaacttcttgatatt 544  Q
    |||||||||||||| | |||| ||| ||||||||||||||| ||||||||||||||||||| |  |||||| ||||| ||||||| ||| || |||||||    
T  34948889 tttcaagaggatttttctgagctagcatcctgctgccttgccaaatgacatattcatctggaacgcagcaagatctagctcatagaaacctcatgatatt 34948988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 451 - 544
Target Start/End: Complemental strand, 16739104 - 16739010
Alignment:
Q  451 aagaggatttctttgag-tagatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagcaacttcttgatatt 544  Q
    |||||||||||| |||| || ||| || || ||||| | |||| ||||||||||||||| |||||||||||| ||||||| ||| ||||||||||    
T  16739104 aagaggatttctctgagctacatcgtgttgtcttgccatatgaaatattcatctggcaggcagcaaaatctagctcatagaaacctcttgatatt 16739010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 261 - 397
Target Start/End: Complemental strand, 5938335 - 5938198
Alignment:
Q  261 cggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagac-cctttatttggttcgtttttgttgcgaatgccttgg 359  Q
    ||||||||||||||||||  |||||||| | ||||| ||| ||||||||||| |||||||| | | |||||||||  ||||||  | ||||||| |||||    
T  5938335 cggattttataatccggatagcatgaagtttttccgaattttaaagtccgaattgcatcaggcacttttatttggagcgttttcttggcgaatggcttgg 5938236  T
Q  360 nnnnnnntagaacaaaggtacataacataaatagaagc 397  Q
           || |||||||| |||||||||||| ||||||    
T  5938235 aaaaaaataaaacaaaggaacataacataaaaagaagc 5938198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 627 - 667
Target Start/End: Original strand, 24169052 - 24169092
Alignment:
Q  627 cacatagagagcaatctattttgcggcagcatgacaaagat 667  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  24169052 cacatagagagctatctattttgcggcagcatgacaaagat 24169092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 264 - 399
Target Start/End: Original strand, 34948664 - 34948800
Alignment:
Q  264 attttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagac-cctttatttggttcgtttttgttgcgaatgccttggnnn 362  Q
    |||||||||||||||  |||||||| | ||||||||| |||||||| || |||||||| | | |||||||||  ||||||  | ||||||| |||||       
T  34948664 attttataatccggatagcatgaagtttttccggattttaaagtccaaattgcatcaggcacttttatttggagcgttttcttggcgaatggcttgggaa 34948763  T
Q  363 nnnntagaacaaaggtacataacataaatagaagcaa 399  Q
        ||||||||||| ||| |||||||| ||||||||    
T  34948764 aaaatagaacaaaggaacagaacataaaaagaagcaa 34948800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 405 - 447
Target Start/End: Original strand, 18963709 - 18963751
Alignment:
Q  405 aaaaccataataacagaaatgatgaattttttgggaagttgtt 447  Q
    ||||||||||||||||||||||||||| |||||||||| ||||    
T  18963709 aaaaccataataacagaaatgatgaatcttttgggaaggtgtt 18963751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 332
Target Start/End: Original strand, 45526507 - 45526588
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttattt 332  Q
    ||||||||||||||||| ||| ||||||   ||||||| |  |||||||| |||| |||||| |||||||| | ||||||||    
T  45526507 tgagggtttccggatttcatactccggacaacatgaaggtggtccggattgtaaaatccgaattgcatcaggctctttattt 45526588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 167; Significance: 4e-89; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 251 - 611
Target Start/End: Original strand, 24830950 - 24831331
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 349  Q
    |||||||||| ||||||||||||  ||||||||||||||||||||||||| |||| |||||||||| |||||||||||  ||||| |||||||||||||     
T  24830950 tgagggtttctggattttataatttggaatgcatgaagctattccggattttaaaatccgaactgcgtcagacccttttgtttggatcgtttttgttgca 24831049  T
Q  350 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatgatgaa 430  Q
    | ||||||||       || |||||||||||||||||||||| ||||||| ||                     ||||||||||||||||||||||||||    
T  24831050 attgccttggaaaaaaataaaacaaaggtacataacataaattgaagcaacataagacaaataaacagttaaaaaaaaccataataacagaaatgatgaa 24831149  T
Q  431 ttttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatag 529  Q
    | |||||||||| ||||||||||||||||||||||||| ||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||    
T  24831150 tcttttgggaaggtgttttcaagaggatttctttgagttagatcttactgccttgccaaatgacatattcatctggcaggcagcaagatctaactcatag 24831249  T
Q  530 caacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 611  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||  | ||||||||||||||||| |||||| ||||||    
T  24831250 caacctcttgatatttttgagttatctatgtatcaaggaggcatcaagcagtatctatatatttttgacagcatgatgagga 24831331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 251 - 611
Target Start/End: Complemental strand, 11666 - 11285
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 349  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||| || |||| |||||     
T  11666 tgagagtttccggattttataatccggaatgcatgaagctattccggattttaaagtccgaactgcatcagacccttttgtttggatcattttcgttgca 11567  T
Q  350 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatgatgaa 430  Q
    |||| |||||       ||||||||||||||||||||||||| ||||||| ||                     ||||| ||||||||| ||||||||||    
T  11566 aatgtcttggaaaaaaatagaacaaaggtacataacataaattgaagcaacatgagacaaataaacagttaaaaaaaacaataataacataaatgatgaa 11467  T
Q  431 ttttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatag 529  Q
    | |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||| ||||| ||| |||||||||||||    
T  11466 tcttttgggaagatgttttcaagaggatttctttgagttagatcctgctgccttgccaaataacatattcatctggaagacaacaagatctaactcatag 11367  T
Q  530 caacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 611  Q
    |||| ||||| |||||||||||||||| | ||||||||||||||||| || ||||||||||| ||||| |||||| ||||||    
T  11366 caacctcttggtatttttgagttatctgtgtatcaaggaggcatcaaggagtatctatatatgtttgacagcatgctgagga 11285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 252 - 548
Target Start/End: Original strand, 41834896 - 41835212
Alignment:
Q  252 gagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttatttggttcgtttttgttgcgaa 351  Q
    ||||||||||||||||||||||||| || |||||||| || |||||||| ||||||||||||||||||||||| ||||||||| |||||||||||| |||    
T  41834896 gagggtttccggattttataatccgaaaagcatgaagttagtccggattttaaagtccgaactgcatcagaccttttatttggatcgtttttgttgagaa 41834995  T
Q  352 tgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaat-------------------ctaaaaccataataacagaaatgatgaatt 432  Q
    ||||||||       ||||||||| |||||||||||||| |||||||| ||                     |||| |||||||||| |||||||||||     
T  41834996 tgccttggaaaaaaatagaacaaaagtacataacataaaaagaagcaacataaaataaataaacaattaaaaaaaatcataataacataaatgatgaatc 41835095  T
Q  433 ttttgggaagttgttttcaagaggatttctttgag-tagatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagca 531  Q
    |||||||||  | |||||||||||||||||||||| |||||| || || ||| | ||| ||||||||||||||| ||  ||||| |||||||||||||||    
T  41835096 ttttgggaatgtattttcaagaggatttctttgagttagatcatgttgtcttacaaaacgacatattcatctggaaggtagcaagatctaactcatagca 41835195  T
Q  532 acttcttgatatttttg 548  Q
    || ||||||||||||||    
T  41835196 acctcttgatatttttg 41835212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 255 - 395
Target Start/End: Original strand, 42190746 - 42190885
Alignment:
Q  255 ggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttatttggttcgtttttgttgcgaatgc 354  Q
    |||||| ||| |||||||||| |||||||||||| |  ||||||||||||||||  ||| |||| ||||| ||| ||| | ||||||| |||||||||||    
T  42190746 ggtttctggagtttataatccagaatgcatgaaggtggtccggattataaagtctaaaccgcataagaccttttttttagatcgttttcgttgcgaatgc 42190845  T
Q  355 cttggnnnnnnntagaacaaaggtacataacataaatagaa 395  Q
    |||||       |||||||||||||||||||||||||||||    
T  42190846 cttgg-aaaaaatagaacaaaggtacataacataaatagaa 42190885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 163; Significance: 1e-86; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 251 - 609
Target Start/End: Complemental strand, 52919394 - 52919013
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaact-gcatcagacccttta-tttggttcgtttttgttgc 348  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| |||| ||||||||||||||  ||||| ||||||| |||||    
T  52919394 tgagggtttccagattttataatccggaatgcatgaagttattccggattttaaagtccaaactagcatcagacccttttgtttggatcgttttcgttgc 52919295  T
Q  349 gaatgccttggnnnnnnn-tagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatgatg 428  Q
     ||||||||||        ||||||||| ||||||||||||||| ||||||| ||                     ||||||||||||||| ||||||||    
T  52919294 aaatgccttggaaaaaaaatagaacaaaagtacataacataaattgaagcaacataagacaaataaacagttaaaaaaaaccataataacaaaaatgatg 52919195  T
Q  429 aattttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcat 527  Q
    ||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||  |||||||||||    
T  52919194 aatcttttgggaaggtgttttcaagaggatttctttgagttagatcctgctgccttgccaaatgacatattcatctggcaggcagcacgatctaactcat 52919095  T
Q  528 agcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgag 609  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||||| ||||    
T  52919094 agcaacctcttgatatttttgagttatctatgtatcaaggaggcatcaaggactatctatatatttttgacagcatgctgag 52919013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 251 - 636
Target Start/End: Complemental strand, 47985623 - 47985217
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 349  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||| || ||||  ||||     
T  47985623 tgagggttttcggattttataatccggaatgcatgaagctattccggattttaaagtccgaactgcatcagacccttttgtttggatcattttc-ttgca 47985525  T
Q  350 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaat-------ctaaa-------------accataataacagaaatgatga 429  Q
    ||||||||||       ||||||||| ||||||||||||||||||| ||| ||        ||||             |||||||||||||||||| |||    
T  47985524 aatgccttggaaaaaaatagaacaaatgtacataacataaatagaatcaacataagacaaataaacagttgaaaaaaaaccataataacagaaatgttga 47985425  T
Q  430 attttttgggaagttgttttcaagaggatttctttgag-tagatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcata 528  Q
    || ||| |||||| |||||||||||||||||||||||| | |||| ||||||||||| ||||||||||||||| |||||||||| |  ||| ||||||||    
T  47985424 atctttcgggaaggtgttttcaagaggatttctttgagttcgatcttgctgccttgccaaatgacatattcatatggcagacagaaggatcgaactcata 47985325  T
Q  529 gcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgaggaggttaaccatgttggca 628  Q
    | ||| |||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||||||||||||  || | |||||||  |    
T  47985324 gaaacctcttgatatttttgagttatctatgtatcaaggaggcatcaaagagtatctatatatttttgacagcatgttgaggattttcatcatgttgtta 47985225  T
Q  629 catagaga 636  Q
    ||||||||    
T  47985224 catagaga 47985217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 251 - 611
Target Start/End: Complemental strand, 55612324 - 55611944
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 349  Q
    ||||| |||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||  ||||| || |||| |||||     
T  55612324 tgaggatttctgaattttataatccggaatgcatgaagctattccggattttaaagtccgaactacatcagacccttttgtttggatcattttcgttgca 55612225  T
Q  350 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatgatgaa 430  Q
    |||||||||        ||||||||||||||||||||||||| ||||||| ||                     |||| |||||||||| ||||||||||    
T  55612224 aatgccttgaaaaaaaatagaacaaaggtacataacataaattgaagcaacatgagacaaataaacaattaaaaaaaatcataataacataaatgatgaa 55612125  T
Q  431 ttttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatag 529  Q
    | |||||||||| ||||||||||||||||||||||| | ||||||||||||||||  ||||||||||||||||| |||| |||||| |||||||||||||    
T  55612124 tcttttgggaagatgttttcaagaggatttctttgacttagatcctgctgccttgtcaaatgacatattcatcttgcaggcagcaagatctaactcatag 55612025  T
Q  530 caacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 611  Q
    |||| ||||||||||||||||||||   |||||||||||| |||||| || ||||||||||||||||| |||||| ||||||    
T  55612024 caacctcttgatatttttgagttat-agtctatcaaggagacatcaaggagtatctatatatttttgacagcatgctgagga 55611944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 251 - 611
Target Start/End: Original strand, 44108280 - 44108659
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttatttggttcgtttttgttgcga 350  Q
    |||||||||||||||||||||||||||||||||||||| |  |||||||||||||||| |||| |||||| ||||||| ||||| ||||||| |||||||    
T  44108280 tgagggtttccggattttataatccggaatgcatgaaggtggtccggattataaagtctgaaccgcatcaaacccttt-tttggatcgttttcgttgcga 44108378  T
Q  351 atgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatgatgaat 431  Q
    |||||||||        |||||||||||||||||||||||||||| ||| ||                     ||||||||||||||| ||||| |||||    
T  44108379 atgccttggaaaaaaacagaacaaaggtacataacataaatagaatcaacataagacaaataaacagttgaaaaaaaccataataacataaatgttgaat 44108478  T
Q  432 tttttgggaagttgttttcaagaggatttctttgagta-gatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagc 530  Q
     ||| |  ||| |||||||||| ||||||||||||||  |||| ||||||||||| |||||||||||||||||||||||||| |  ||| |||||||||     
T  44108479 ctttcgtaaaggtgttttcaaggggatttctttgagttcgatcatgctgccttgccaaatgacatattcatctggcagacagaaggatcgaactcataga 44108578  T
Q  531 aacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 611  Q
    ||| |||||||||||| ||||||||||| ||||||||||||||||| || ||||| ||||||||||| |||||||||||||    
T  44108579 aacctcttgatattttagagttatctatgtatcaaggaggcatcaaggagtatctgtatatttttgatagcatgttgagga 44108659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 405 - 611
Target Start/End: Complemental strand, 38990429 - 38990222
Alignment:
Q  405 aaaaccataataacagaaatgatgaattttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatct 503  Q
    ||||||||||||||| ||||||||||| |||||  ||| ||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||    
T  38990429 aaaaccataataacataaatgatgaatcttttgaaaaggtgttttcaagaggatttctttgagttagatcctactgccttgccaaatgacatattcatct 38990330  T
Q  504 ggcagacagcaaaatctaactcatagcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcat 603  Q
    ||||| |||||| ||| |||||||| |||| |||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||||    
T  38990329 ggcaggcagcaagatcaaactcataacaacctcttgatatttttgagttatctatgtatcaaggaggcatcaaggagtatctatatatttttgacagcat 38990230  T
Q  604 gttgagga 611  Q
    | ||||||    
T  38990229 gctgagga 38990222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 405 - 611
Target Start/End: Original strand, 47604138 - 47604344
Alignment:
Q  405 aaaaccataataacagaaatgatgaattttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatct 503  Q
    |||| |||||||||| ||||||||||| |||| ||||| | ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  47604138 aaaatcataataacataaatgatgaatcttttaggaaggtattttcaagaggatttctttgagttagatcctgctgccttgccaaatgacatattcatct 47604237  T
Q  504 ggcagacagcaaaatctaactcatagcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcat 603  Q
    |||||||||||| |||||||||||| |||| |||||||||||||||||||||| | ||||||||||||||||| || |||||| |||||||||| |||||    
T  47604238 ggcagacagcaagatctaactcatatcaacctcttgatatttttgagttatctctgtatcaaggaggcatcaaggagtatcta-atatttttgacagcat 47604336  T
Q  604 gttgagga 611  Q
    ||||||||    
T  47604337 gttgagga 47604344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 256 - 604
Target Start/End: Complemental strand, 45659458 - 45659091
Alignment:
Q  256 gtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttatttggttcgtttttgttgcgaatgcc 355  Q
    |||||||||||||||||| |||||||| ||||||||||||||||| ||||||| ||||| ||||||||| ||| |||  | |||||| ||||| |||| |    
T  45659458 gtttccggattttataattcggaatgcttgaagctattccggattgtaaagtctgaactacatcagaccattttttttat-cgttttcgttgcaaatgtc 45659360  T
Q  356 ttggnnnnnnn-tagaacaaaggtacataacataaatagaagcaaaatct------------------aaaaccataataacagaaatgatgaatttttt 436  Q
    | ||        ||||||||||||||||||||||||||||||||| ||                    ||||| |||| |||| ||||||||||| ||||    
T  45659359 tcggaaaaaaaatagaacaaaggtacataacataaatagaagcaacataagacaaataaatagttaaaaaaacgataacaacataaatgatgaatatttt 45659260  T
Q  437 gggaagttgttttcaagaggatttctttgagtag-atcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagcaactt 535  Q
    |||||||||||||||||||||||||||| ||| | ||||||||| ||||| |||||||||||||||||||||| |||||| ||||||||||||||||| |    
T  45659259 gggaagttgttttcaagaggatttctttaagttggatcctgctgtcttgccaaatgacatattcatctggcaggcagcaagatctaactcatagcaacct 45659160  T
Q  536 cttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatg 604  Q
    |||||||||||| | |||| ||| ||||||| ||||||||| || ||||||||||||||||| ||||||    
T  45659159 cttgatattttttacttatatatgtatcaagaaggcatcaaggagtatctatatatttttgacagcatg 45659091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 433 - 611
Target Start/End: Original strand, 53269777 - 53269956
Alignment:
Q  433 ttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagca 531  Q
    |||||||||  ||||||||| ||||||||||||||| ||||| ||||||||||| |||| |||||||||||||||||||||||  |||||||||||||||    
T  53269777 ttttgggaaagtgttttcaaaaggatttctttgagttagatcatgctgccttgccaaataacatattcatctggcagacagcacgatctaactcatagca 53269876  T
Q  532 acttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 611  Q
    || |||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||||||||||||    
T  53269877 acctcttgatatttttgagttatctatgtatcaaggaggcatcaaggagtatctatatatttttgacagcatgttgagga 53269956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 254 - 522
Target Start/End: Original strand, 13721548 - 13721838
Alignment:
Q  254 gggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttt-atttggttcgtttttgttgcgaat 352  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||  ||||||||||||||||||| |||    
T  13721548 gggtttccggattttataatccggaatgcatcaagctattctggattttaaagtccgaactgcatcagaccctttcgtttggttcgtttttgttgcaaat 13721647  T
Q  353 gccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaat-------ctaaa-------------accataataacagaaatgatgaatt 432  Q
    |||||||       ||||||||||||||||||||||||| ||||||| ||        ||||             |||||||||||| |||||||||||     
T  13721648 gccttggaaaaaaatagaacaaaggtacataacataaattgaagcaacatgagacaaataaacaattaaaaaaaaaccataataacataaatgatgaatc 13721747  T
Q  433 ttttgggaagttgttttcaagaggatttctttgag-tagatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaa 522  Q
    ||||||||||  ||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||| || |||| ||||||    
T  13721748 ttttgggaaggcgttttcaagaggatttctttgagttagattctgctgccttgccaaatgacatattcatctggcaaaccgcaagatctaa 13721838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 405 - 611
Target Start/End: Complemental strand, 40692744 - 40692537
Alignment:
Q  405 aaaaccataataacagaaatgatgaattttttgggaagttgttttcaagaggatttctttgagta-gatcctgctgccttgcgaaatgacatattcatct 503  Q
    ||||||||||||||| ||||| ||||| ||| |||||  |||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||    
T  40692744 aaaaccataataacataaatgttgaatctttcgggaaagtgttttcaagaggatttctttgagttcgatcctgctgccttgccaaatgacatattcatct 40692645  T
Q  504 ggcagacagcaaaatctaactcatagcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcat 603  Q
    ||||| ||| |  ||| ||||||||| ||  |||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||| | |||||    
T  40692644 ggcaggcagaaggatcgaactcatagaaatctcttgatatttttgagttatctatgtatcaaggaggcatcaaggagtatctatatattttttacagcat 40692545  T
Q  604 gttgagga 611  Q
    ||||||||    
T  40692544 gttgagga 40692537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 405 - 611
Target Start/End: Complemental strand, 40762122 - 40761915
Alignment:
Q  405 aaaaccataataacagaaatgatgaattttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatct 503  Q
    ||||| |||| |||| ||||||||||| |||| ||||| ||||||||||||||||||||||||| |||||  | |||||||| |||||||||||||||||    
T  40762122 aaaacaataaaaacataaatgatgaatcttttcggaaggtgttttcaagaggatttctttgagttagatcaagttgccttgccaaatgacatattcatct 40762023  T
Q  504 ggcagacagcaaaatctaactcatagcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcat 603  Q
    | ||| |||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| || ||| |||||||||| || |||||    
T  40762022 gacaggcagcaagatctaactcatagcaacctcttgatatttttgagttatctatgtatcaaggaggcatcaaggagtatttatatattttcgacagcat 40761923  T
Q  604 gttgagga 611  Q
    | ||||||    
T  40761922 gctgagga 40761915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 252 - 548
Target Start/End: Original strand, 11647907 - 11648223
Alignment:
Q  252 gagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttatttggttcgtttttgttgcgaa 351  Q
    ||||||||||||||||||||||||| || |||||||| || |||||||| ||||||||||||||||||||||| ||||||||| |||||||||||| |||    
T  11647907 gagggtttccggattttataatccgaaaagcatgaagttagtccggattttaaagtccgaactgcatcagaccttttatttggatcgtttttgttgagaa 11648006  T
Q  352 tgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaat-------------------ctaaaaccataataacagaaatgatgaatt 432  Q
    ||||||||       ||||||||| |||||||||||||| |||||||| ||                     |||| |||||||||| |||||||||||     
T  11648007 tgccttggaaaaaaatagaacaaaagtacataacataaaaagaagcaacataaaataaataaacaattaaaaaaaatcataataacataaatgatgaatc 11648106  T
Q  433 ttttgggaagttgttttcaagaggatttctttgag-tagatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagca 531  Q
    |||||||||  | |||||||||||||||||||||| |||||| || || ||| | ||| ||||||||||||||| ||  ||||| |||||||||||||||    
T  11648107 ttttgggaatgtattttcaagaggatttctttgagttagatcatgttgtcttacaaaacgacatattcatctggaaggtagcaagatctaactcatagca 11648206  T
Q  532 acttcttgatatttttg 548  Q
    || ||||||||||||||    
T  11648207 acctcttgatatttttg 11648223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 405 - 611
Target Start/End: Original strand, 53511896 - 53512103
Alignment:
Q  405 aaaaccataataacagaaatgatgaattttttgggaagttgttttcaagaggatttctttgagta-gatcctgctgccttgcgaaatgacatattcatct 503  Q
    ||||||||||||||| ||||| ||||| ||| |||||| |||||||||||||||||||||||||  |||| |||| |||||| |||||||| ||||||||    
T  53511896 aaaaccataataacaaaaatgttgaatctttcgggaaggtgttttcaagaggatttctttgagttcgatcatgctcccttgccaaatgacacattcatct 53511995  T
Q  504 ggcagacagcaaaatctaactcatagcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcat 603  Q
    ||||| ||| |  ||| ||||||||| ||| ||||||||||||||||||||||||  ||||||||| |||||| || ||| ||||||||||||| |||||    
T  53511996 ggcaggcagaaggatcgaactcatagaaacctcttgatatttttgagttatctatgcatcaaggagacatcaaggagtatttatatatttttgacagcat 53512095  T
Q  604 gttgagga 611  Q
    | ||||||    
T  53512096 gctgagga 53512103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 251 - 391
Target Start/End: Original strand, 53511720 - 53511861
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccc-tttatttggttcgtttttgttgcg 349  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||| ||||| ||||||| |||||     
T  53511720 tgagggtttccagactttataatccggaatgcatgaagctattccggattttaaagtccgaactacatcagacccttttgtttggatcgttttcgttgca 53511819  T
Q  350 aatgccttggnnnnnnntagaacaaaggtacataacataaat 391  Q
    ||||||||||       |||||||||||||||||||||||||    
T  53511820 aatgccttggaaaaaaatagaacaaaggtacataacataaat 53511861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 251 - 328
Target Start/End: Original strand, 51889303 - 51889380
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttt 328  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  51889303 tgagggtttccagattttataatccggaatgcatgaagctattccagattttaaagtccgaactgcatcagacccttt 51889380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 251 - 399
Target Start/End: Original strand, 53269584 - 53269731
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttatttggttcgtttttgttgcga 350  Q
    |||| |||||||||||||||||||  |||| | ||||||||||||||||| ||||||  ||||| || |||||||||||||| | ||||||| |||||||    
T  53269584 tgagagtttccggattttataatcttgaatccttgaagctattccggattgtaaagtttgaactacaccagaccctttatttcgatcgttttcgttgcga 53269683  T
Q  351 atgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaa 399  Q
    |||||||||       ||||||||| | |||||||||||||||||||||    
T  53269684 atgccttgg-aaaaaatagaacaaaagaacataacataaatagaagcaa 53269731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 251 - 328
Target Start/End: Complemental strand, 38990625 - 38990548
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttt 328  Q
    ||||| ||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  38990625 tgaggatttccagattttataatccggaatgcatgaagttattccggattttaaagtccgaactgcatcagacccttt 38990548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 251 - 309
Target Start/End: Original strand, 17647385 - 17647443
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtcc 309  Q
    ||||||||| | ||||||||| |||||||||||||||| ||||||||||||||||||||    
T  17647385 tgagggttttcagattttatagtccggaatgcatgaagttattccggattataaagtcc 17647443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 251 - 399
Target Start/End: Complemental strand, 40692920 - 40692769
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttatttggttcgtttttgttgcga 350  Q
    ||||||||| | ||||||| |||||||||||||||||| |  |||||||| ||||||| | ||  |||||||||| ||  || | ||||||| |||| ||    
T  40692920 tgagggttttcagattttacaatccggaatgcatgaaggtggtccggattgtaaagtctggaccacatcagacccatttattagatcgttttcgttgtga 40692821  T
Q  351 atgccttg---gnnnnnnntagaacaaaggtacataacataaatagaagcaa 399  Q
    ||||||||   |        |||||||||||||||||||||||||||| |||    
T  40692820 atgccttgaaagaaaaaaaaagaacaaaggtacataacataaatagaatcaa 40692769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 367 - 399
Target Start/End: Complemental strand, 38990485 - 38990453
Alignment:
Q  367 tagaacaaaggtacataacataaatagaagcaa 399  Q
    ||||||||||||||||||||||||| |||||||    
T  38990485 tagaacaaaggtacataacataaattgaagcaa 38990453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 160; Significance: 6e-85; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 251 - 611
Target Start/End: Original strand, 13037082 - 13037464
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 349  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||| |||||||||||||||  ||||| || |||| |||||     
T  13037082 tgagggtttccggattttataatctggaatgcataaagctattccggattttaaagtccgaattgcatcagacccttttgtttggatcattttcgttgca 13037181  T
Q  350 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaat--------------ct------aaaaccataataacagaaatgatga 429  Q
    ||||||||||       || |||||||||||||||||||||| ||||||| ||              ||      |||||||||||||||||||||||||    
T  13037182 aatgccttggaaaaaaataaaacaaaggtacataacataaattgaagcaacataagacaaataaacacttaaaaaaaaaccataataacagaaatgatga 13037281  T
Q  430 attttttgggaagttgttttcaagaggatttctttgagta-gatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcata 528  Q
    || ||||| |||| |||||||||||||||||||||||||  || |||| |||||||| |||||||||||||||||||||| |||||| ||||||||||||    
T  13037282 atcttttgagaaggtgttttcaagaggatttctttgagtttgagcctgttgccttgccaaatgacatattcatctggcaggcagcaagatctaactcata 13037381  T
Q  529 gcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 611  Q
     |||| |||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||| | ||||||    
T  13037382 tcaacctcttgatatttttgagttatctatgtatcaaggaggcatcaaggagtatctatatatttttgacagcaagctgagga 13037464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 251 - 590
Target Start/End: Original strand, 480512 - 480871
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 349  Q
    ||||||||| ||||||||||||||  ||||||||||||||||||| |||| ||||||  |||||||||||||||||||  ||||| ||||||| |||||     
T  480512 tgagggttttcggattttataatctagaatgcatgaagctattccagattttaaagtttgaactgcatcagacccttttgtttggatcgttttcgttgca 480611  T
Q  350 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatgatgaa 430  Q
    |||||||||        ||||||||||||||||||||||||| ||||||| ||                     ||||||||||||||| ||||||||||    
T  480612 aatgccttg-aaaaaaatagaacaaaggtacataacataaattgaagcaacatgagacaaataaacagttaaaaaaaaccataataacataaatgatgaa 480710  T
Q  431 ttttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatag 529  Q
    | |||||||||  ||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||| | |||||||||||||    
T  480711 tcttttgggaatgtgttttcaagaggatttctttgagttagatcttgctgccttgccaaatgacatattcatctggcagacagccagatctaactcatag 480810  T
Q  530 caacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatata 590  Q
    |||| |||| ||||||||||||||||| | ||||||||||||||||| || ||||||||||    
T  480811 caacctctttatatttttgagttatctgtatatcaaggaggcatcaaggagtatctatata 480871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 511 - 667
Target Start/End: Complemental strand, 3514185 - 3514030
Alignment:
Q  511 agcaaaatctaactcatagcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagg 610  Q
    ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| |||| ||| ||| || |||||||||||||||||||||||| | | |    
T  3514185 agcaagatctaactcatagcaacctcttgatatttttgagt-atctatctatcgaggatgcagcaaggagtatctatatatttttgaaagcatgctaaag 3514087  T
Q  611 aggttaaccatgttggcacatagagagcaatctattttgcggcagcatgacaaagat 667  Q
    |  || |||||| ||||||||||||||||||||||||| || |||||||||||||||    
T  3514086 atcttcaccatgctggcacatagagagcaatctattttacgacagcatgacaaagat 3514030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 251 - 399
Target Start/End: Original strand, 34949725 - 34949874
Alignment:
Q  251 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccc-tttatttggttcgtttttgttgcg 349  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||| ||||||| |||||     
T  34949725 tgagggtttctggattttataatctggaatgcatgaagctattccggattttaaagtctgaactgcatcagacccttttatttggatcgttttcgttgca 34949824  T
Q  350 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaa 399  Q
    ||||| ||||       ||||||||||||||||||||||||| |||||||    
T  34949825 aatgcattggaaaaaaatagaacaaaggtacataacataaattgaagcaa 34949874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 447 - 541
Target Start/End: Complemental strand, 12304841 - 12304746
Alignment:
Q  447 tttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagcaacttcttgat 541  Q
    |||||||||||||||||||||| ||||| || |||||||  ||||||| ||||||||||||||  ||||| ||||||||||||| ||| |||||||    
T  12304841 tttcaagaggatttctttgagttagatcatgttgccttgacaaatgacttattcatctggcaggaagcaagatctaactcatagaaacctcttgat 12304746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 264 - 402
Target Start/End: Complemental strand, 12305012 - 12304873
Alignment:
Q  264 attttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttatt-tggttcgttttt-gttgcgaatgccttggnn 361  Q
    |||||||| ||||||||||||||||    ||||||||||||| || ||||||||||||||||| |||| ||| |||||||| || ||||||| |||||      
T  12305012 attttatattccggaatgcatgaagtctgtccggattataaaatctgaactgcatcagaccctgtattctggatcgtttttcgtggcgaatggcttgg-a 12304914  T
Q  362 nnnnntagaacaaaggtacataacataaatagaagcaaaat 402  Q
         || ||||||||||||||||||||||| || ||||||    
T  12304913 aaaaataaaacaaaggtacataacataaataaaaacaaaat 12304873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 104; Significance: 2e-51; HSPs: 2)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 259 - 557
Target Start/End: Original strand, 12368 - 12686
Alignment:
Q  259 tccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttatttggttcgtttttgttgcgaatgccttg 358  Q
    |||||||||||||||||||||||||||||| |  |||||||||||||||| |||| |||||||||||||| ||||| ||||||| |||||||||||||||    
T  12368 tccggattttataatccggaatgcatgaaggtgatccggattataaagtctgaaccgcatcagaccctttttttggatcgttttcgttgcgaatgccttg 12467  T
Q  359 gnnnnnnntagaacaaaggtacataacataaatagaagcaaaat-------ctaaa-------------accataataacagaaatgatgaattttttgg 438  Q
    |       ||||||||||||||||||||||||||||| ||| ||        ||||             |||||||||||| ||||| ||||| ||| ||    
T  12468 g-aaaaaatagaacaaaggtacataacataaatagaatcaacataagacaaataaacagttgaaaaaaaaccataataacataaatgttgaatctttcgg 12566  T
Q  439 gaagttgttttcaagaggatttctttgag-tagatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagcaacttct 537  Q
     ||| |||||||||||||||||||||||| |  ||||||||||||||| ||||||||||||||||| |||| ||| |  ||| ||||||||| ||| |||    
T  12567 aaaggtgttttcaagaggatttctttgagttccatcctgctgccttgccaaatgacatattcatctagcaggcagaaggatcgaactcatagaaacctct 12666  T
Q  538 tgatatttttgagttatcta 557  Q
    ||||||||||||||||||||    
T  12667 tgatatttttgagttatcta 12686  T

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Target: scaffold0168; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 550 - 611
Target Start/End: Original strand, 16100 - 16161
Alignment:
Q  550 gttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 611  Q
    ||||||||| | ||||||||||||||| || ||||||||||||||||| | |||| ||||||    
T  16100 gttatctatgtgtcaaggaggcatcaaggagtatctatatatttttgacaacatgctgagga 16161  T

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Target: scaffold0064 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 581 - 667
Target Start/End: Complemental strand, 62524 - 62438
Alignment:
Q  581 tatctatatatttttgaaagcatgttgaggaggttaaccatgttggcacatagagagcaatctattttgcggcagcatgacaaagat 667  Q
    ||||||||||||||| |||||||||||||||  || | || | || | |||||||||||||||||||||||||||||||||||||||    
T  62524 tatctatatattttttaaagcatgttgaggatcttcatcacgctgtcgcatagagagcaatctattttgcggcagcatgacaaagat 62438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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