View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8500_low_34 (Length: 226)
Name: NF8500_low_34
Description: NF8500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8500_low_34 |
 | |
|
| [»] chr5 (12 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 37400619 - 37400407
Alignment:
| Q |
14 |
cctgtgagattgttgttgctgaggaccaaccctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttatcatccaaaaaca |
113 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37400619 |
cctgtgagattgttgttgctgaggtacaactctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttatcacccaaaaaca |
37400520 |
T |
|
| Q |
114 |
cataactcaatttggaacgttttgtgatttcaattggaattgggccaactagtttgttatctcctaaatataaatgagaaagttgaggtagatgaaaaag |
213 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37400519 |
catagctcaattttgaacgttttgtgatttcaattggaattgggccaactagtttgttagatgataaatataaatgagaaagatgaggtagatgaaaaag |
37400420 |
T |
|
| Q |
214 |
tgatgatggaact |
226 |
Q |
| |
|
||||||||||||| |
|
|
| T |
37400419 |
tgatgatggaact |
37400407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 37711977 - 37712189
Alignment:
| Q |
14 |
cctgtgagattgttgttgctgaggaccaaccctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttatcatccaaaaaca |
113 |
Q |
| |
|
|||||||| | ||||| ||||||| ||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37711977 |
cctgtgaggtggttgtcgctgaggcccaactctaacaatgaaggcaaagaataacaccactgtggaattgttccatttaacatgttatcatccaaaaaca |
37712076 |
T |
|
| Q |
114 |
cataactcaatttggaacgttttgtgatttcaattggaattgggccaactagtttgttatctcctaaatataaatgagaaagttgaggtagatgaaaaag |
213 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37712077 |
catagctcaattttgaacgttttgtgatttcaattggaattgggccaactagtttgttatctgctaaatataaatgagaaagatgaggtagatgaaaaag |
37712176 |
T |
|
| Q |
214 |
tgatgatggaact |
226 |
Q |
| |
|
||||||||||||| |
|
|
| T |
37712177 |
tgatgatggaact |
37712189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 37640225 - 37640437
Alignment:
| Q |
14 |
cctgtgagattgttgttgctgaggaccaaccctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttatcatccaaaaaca |
113 |
Q |
| |
|
|||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
37640225 |
cctgtgagattgttgtcactgaggtacaactctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttatcatccaaaccca |
37640324 |
T |
|
| Q |
114 |
cataactcaatttggaacgttttgtgatttcaattggaattgggccaactagtttgttatctcctaaatataaatgagaaagttgaggtagatgaaaaag |
213 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37640325 |
catatctcaatttggaacgttttgcgatttcaattggaattgggccaactagtttgttatatgctaaatataaatgagaaagatgaggtagatgaaaaag |
37640424 |
T |
|
| Q |
214 |
tgatgatggaact |
226 |
Q |
| |
|
||||||||||||| |
|
|
| T |
37640425 |
tgatgatggaact |
37640437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 46 - 226
Target Start/End: Original strand, 37697172 - 37697352
Alignment:
| Q |
46 |
taacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttatcatccaaaaacacataactcaatttggaacgttttgtgatttca |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37697172 |
taacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttatcatccaaaaacacataactcaatttggaacgttttgtgatttca |
37697271 |
T |
|
| Q |
146 |
attggaattgggccaactagtttgttatctcctaaatataaatgagaaagttgaggtagatgaaaaagtgatgatggaact |
226 |
Q |
| |
|
||||||||||| ||||||||||||||| | |||| |||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
37697272 |
attggaattggcccaactagtttgttaaatgataaacctaaatgagaaaggtggggtagatgaaaaagtgatgatggaact |
37697352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 37533453 - 37533665
Alignment:
| Q |
14 |
cctgtgagattgttgttgctgaggaccaaccctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttatcatccaaaaaca |
113 |
Q |
| |
|
|||||||| | ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
37533453 |
cctgtgaggtggttgttgctgaggtgtaactctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttatcactcaaaccca |
37533552 |
T |
|
| Q |
114 |
cataactcaatttggaacgttttgtgatttcaattggaattgggccaactagtttgttatctcctaaatataaatgagaaagttgaggtagatgaaaaag |
213 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||| | |||| |||| |||||| ||||||||||||||||| |
|
|
| T |
37533553 |
catagctcaattttgaacgttttgtgatttcaattggaattggcccaactagtttgttatatgataaacctaaaatagaaaggtgaggtagatgaaaaag |
37533652 |
T |
|
| Q |
214 |
tgatgatggaact |
226 |
Q |
| |
|
||||||||||||| |
|
|
| T |
37533653 |
tgatgatggaact |
37533665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 37594677 - 37594889
Alignment:
| Q |
14 |
cctgtgagattgttgttgctgaggaccaaccctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttatcatccaaaaaca |
113 |
Q |
| |
|
||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
37594677 |
cctgtaagattgttgttgctgaggtacaattctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttatccctcaaaccca |
37594776 |
T |
|
| Q |
114 |
cataactcaatttggaacgttttgtgatttcaattggaattgggccaactagtttgttatctcctaaatataaatgagaaagttgaggtagatgaaaaag |
213 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||| | |||| |||| |||||| ||||||||||||||||| |
|
|
| T |
37594777 |
catagctcaattttgaacgttttgtgatttcaattggaattggcccaactagtttgttatatgataaacctaaaatagaaaggtgaggtagatgaaaaag |
37594876 |
T |
|
| Q |
214 |
tgatgatggaact |
226 |
Q |
| |
|
||||||||||||| |
|
|
| T |
37594877 |
tgatgatggaact |
37594889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 37703021 - 37703233
Alignment:
| Q |
14 |
cctgtgagattgttgttgctgaggaccaaccctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttatcatccaaaaaca |
113 |
Q |
| |
|
|||||||| | ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
37703021 |
cctgtgaggtggttgtcgccgaggaccaaccctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttatccctcaaaccca |
37703120 |
T |
|
| Q |
114 |
cataactcaatttggaacgttttgtgatttcaattggaattgggccaactagtttgttatctcctaaatataaatgagaaagttgaggtagatgaaaaag |
213 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||| | |||| |||| | |||| ||||||||||||||||| |
|
|
| T |
37703121 |
catagctcaattttgaacgttttgtgatttcaattggaattggcccaactagtttgttaaatgataaacctaaaataaaaaggtgaggtagatgaaaaag |
37703220 |
T |
|
| Q |
214 |
tgatgatggaact |
226 |
Q |
| |
|
||||||||||||| |
|
|
| T |
37703221 |
tgatgatggaact |
37703233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 37824248 - 37824460
Alignment:
| Q |
14 |
cctgtgagattgttgttgctgaggaccaaccctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttatcatccaaaaaca |
113 |
Q |
| |
|
|||||||| | ||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
37824248 |
cctgtgaggtggttgtcgctgaggcccaactctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttaaagcttaaatcca |
37824347 |
T |
|
| Q |
114 |
cataactcaatttggaacgttttgtgatttcaattggaattgggccaactagtttgttatctcctaaatataaatgagaaagttgaggtagatgaaaaag |
213 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
37824348 |
caatactcaattttgaacgttttgtgatttcaattggaattgggccaactagtttgttagatgataaatataaataagaaagatgaggtagatgaaaaag |
37824447 |
T |
|
| Q |
214 |
tgatgatggaact |
226 |
Q |
| |
|
||||||||||||| |
|
|
| T |
37824448 |
tgatgatggaact |
37824460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 40 - 226
Target Start/End: Original strand, 37436086 - 37436272
Alignment:
| Q |
40 |
caaccctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttatcatccaaaaacacataactcaatttggaacgttttgtg |
139 |
Q |
| |
|
|||| ||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||| || | | |||||| |||||||| |||||||||| |
|
|
| T |
37436086 |
caactctaacaatgaaggcaaataataacaccactgtggaattgttccatttaacatgttatattctagacccacatagctcaattttaaacgttttgta |
37436185 |
T |
|
| Q |
140 |
atttcaattggaattgggccaactagtttgttatctcctaaatataaatgagaaagttgaggtagatgaaaaagtgatgatggaact |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||| |||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
37436186 |
atttcaattggaattgggccaactagtttgttaaatgataaatctaaatgagaaaggtggggtagatgaaaaagtgatgatggaact |
37436272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 37392699 - 37392487
Alignment:
| Q |
14 |
cctgtgagattgttgttgctgaggaccaaccctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttatcatccaaaaaca |
113 |
Q |
| |
|
|||||||||| ||||| ||||| ||||| ||| || |||||||||||||||||||| || |||||||| ||||| ||||||||| | | ||| || |
|
|
| T |
37392699 |
cctgtgagatggttgtcattgaggtccaactctattaatgaaggcaaagaataacaccactgcggaattgtaccattaaacatgttagaacctaaattca |
37392600 |
T |
|
| Q |
114 |
cataactcaatttggaacgttttgtgatttcaattggaattgggccaactagtttgttatctcctaaatataaatgagaaagttgaggtagatgaaaaag |
213 |
Q |
| |
|
|| |||||||| || ||||||||||||| || ||||||||||||||||||||||||| | ||||| |||| |||||| | |||||||||||||| |
|
|
| T |
37392599 |
caatgctcaattttgagcgttttgtgatttgaactggaattgggccaactagtttgttagatgataaatctaaaaaagaaaggttgggtagatgaaaaag |
37392500 |
T |
|
| Q |
214 |
tgatgatggaact |
226 |
Q |
| |
|
||||||||||||| |
|
|
| T |
37392499 |
tgatgatggaact |
37392487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 37343272 - 37343329
Alignment:
| Q |
52 |
cgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttatcatccaaa |
109 |
Q |
| |
|
||||||||||| | ||||||||| | ||||| ||||||||||||||||||| |||||| |
|
|
| T |
37343272 |
cgaaggcaaagtaaaacaccaatttagaatttttccatttaacatgttatcgtccaaa |
37343329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 37429119 - 37429164
Alignment:
| Q |
48 |
acaacgaaggcaaagaataacaccaatgtggaattgttccatttaa |
93 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||| ||||| |
|
|
| T |
37429119 |
acaacgaaggcaaggaataacaccagtgtggaattgttccgtttaa |
37429164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 5e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 46 - 226
Target Start/End: Complemental strand, 16842651 - 16842471
Alignment:
| Q |
46 |
taacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttatcatccaaaaacacataactcaatttggaacgttttgtgatttca |
145 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||| |||||| |||||||| ||| ||||||||||||| |
|
|
| T |
16842651 |
taacaacgaaggcaaagaataacaccaatttggaattgttccatttaacatgttctcactcaaacccacatagctcaattttgaagtttttgtgatttca |
16842552 |
T |
|
| Q |
146 |
attggaattgggccaactagtttgttatctcctaaatataaatgagaaagttgaggtagatgaaaaagtgatgatggaact |
226 |
Q |
| |
|
||||||||||||||||| ||||||||| | ||||||||||| |||||| | |||||||||||||||||||||||||||| |
|
|
| T |
16842551 |
attggaattgggccaaccagtttgttaaatgataaatataaattagaaagataaggtagatgaaaaagtgatgatggaact |
16842471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 24217522 - 24217460
Alignment:
| Q |
39 |
ccaaccctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttat |
101 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
24217522 |
ccaactctaacaacgaaggcaaggaataacaccattgcggaattgttccatttaacatgttat |
24217460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 14553463 - 14553675
Alignment:
| Q |
14 |
cctgtgagattgttgttgctgaggaccaaccctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttatcatccaaaaaca |
113 |
Q |
| |
|
|||||||| | ||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| || |
|
|
| T |
14553463 |
cctgtgaggtggttgtcgctgagggataactctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttataacttaaatcca |
14553562 |
T |
|
| Q |
114 |
cataactcaatttggaacgttttgtgatttcaattggaattgggccaactagtttgttatctcctaaatataaatgagaaagttgaggtagatgaaaaag |
213 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||| ||| || ||||||||||||||| | |||| ||||| |||||| |||||||||| |||||| |
|
|
| T |
14553563 |
catagctcaattttgaacgttttgtgatttcaattgcaatcggcccaactagtttgttagatgataaacataaaaaagaaagctgaggtagattaaaaag |
14553662 |
T |
|
| Q |
214 |
tgatgatggaact |
226 |
Q |
| |
|
||||||||||||| |
|
|
| T |
14553663 |
tgatgatggaact |
14553675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 23496081 - 23496121
Alignment:
| Q |
61 |
agaataacaccaatgtggaattgttccatttaacatgttat |
101 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23496081 |
agaaaaacaccaacgtggaattgttccatttaacatgttat |
23496121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University