View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8500_low_35 (Length: 222)
Name: NF8500_low_35
Description: NF8500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8500_low_35 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 24 - 214
Target Start/End: Complemental strand, 36126146 - 36125956
Alignment:
| Q |
24 |
acctctactcccaccacctatgcttttatccaacacttctccactccacccttccctcactatagattccacccacattgctaaatcttcatttgctccc |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36126146 |
acctctactcccaccacctatgcttttatccaacacttctccactccacccatccctcactatagattccacccacattgctaaatcttcatttgctccc |
36126047 |
T |
|
| Q |
124 |
ttcccatgcctcaaataatttgcagggaacttccctgtcaatagctccaatataagtatccctaaacaccatacgtcgttcttctcactcg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
36126046 |
ttcccatgcctcaaataatttgcagggaacttccctgtcaatagctccaatataagtatccctaaacaccatacgtcgctcttctcgctcg |
36125956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University