View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8500_low_38 (Length: 201)
Name: NF8500_low_38
Description: NF8500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8500_low_38 |
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| [»] scaffold0332 (1 HSPs) |
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Alignment Details
Target: scaffold0332 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: scaffold0332
Description:
Target: scaffold0332; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 184
Target Start/End: Original strand, 6125 - 6292
Alignment:
| Q |
19 |
cacagtttgtattttatgcacagactgcacctacacgatcattgctttctatggattcactttgcactatactta--gatagcagaaaatgattccccct |
116 |
Q |
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| T |
6125 |
cacagttcgtattttatgcacagactgcacctacacgatcattgctttctatggattcactttgcactatacttatagatagcagaaaatgattccccct |
6224 |
T |
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| Q |
117 |
gttattatatcagtccaagaaagaatatggacagtcattttcttctattgaattttcattccctttgt |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6225 |
gttattatatcagtccaagaaagaatatggacagtcattttcttctattgaattttcattccctttgt |
6292 |
T |
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