View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8500_low_5 (Length: 576)
Name: NF8500_low_5
Description: NF8500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8500_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 530; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 35 - 568
Target Start/End: Complemental strand, 36999298 - 36998765
Alignment:
| Q |
35 |
aatcaaatgtaattaatcatggtatatgcctgattattattattttttaggtacattttaggtgcaacattatttcaatcaaaattaaccataaaattac |
134 |
Q |
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| T |
36999298 |
aatcaaatgtaattaatcatggtatatgcctgattattattattttttaggtacattttaggtgcaacattatttcaatcaaaattaaccataaaattac |
36999199 |
T |
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| Q |
135 |
ctcttagttaaggatagtttttaatgttgtgtgagctagcaaatatgtcacaccttcgcatttcaatgtaaaatgttggtattaaaaatcattataattc |
234 |
Q |
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| T |
36999198 |
ctcttagttaaggatagtttttaatgttgtgtgagctagcaaatatgtcacaccttcgcatttcaatgtaaaatgttggtattaaaaatcattataattc |
36999099 |
T |
|
| Q |
235 |
caggaaaaatagtatacttttgaagaactcttttttcttctttcaatgtgctagttatgggtcacatttgtgttgtttgttcctaacatgtgttgaacta |
334 |
Q |
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| T |
36999098 |
caggaaaaatagtatacttttgaagaactcttttttcttctttcaatgtgctagttatgggtcacatttgtgttgtttgttcctaacatgtgttgaacta |
36998999 |
T |
|
| Q |
335 |
atttatctccagactgagaagatgacagcacgtgatcctgtgcaaaaagagatggcaacccataagaaagaggcaaagatgaaccaggcagagctagata |
434 |
Q |
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| T |
36998998 |
atttatctccagactgagaagatgacagcacgtgatcctgtgcaaaaagagatggcaacccataagaaagaggcaaagatgaaccaggcagagctagata |
36998899 |
T |
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| Q |
435 |
agctggcagcacgtgaacacaatgcggcggtcaaacagacgaccactgctgcggctgggcatatgggtcagccccaccacaccacagggacgactggaac |
534 |
Q |
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| T |
36998898 |
agctggcagcacgtgaacacaatgcggcggtcaaacagacgaccactgctgcggctgggcatatgggtcagccccaccacaccacagggacgactggaac |
36998799 |
T |
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| Q |
535 |
ggggaccgccacatactctaccactgagaattat |
568 |
Q |
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| T |
36998798 |
ggggaccgccacatactctaccactgggaattat |
36998765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 344 - 456
Target Start/End: Complemental strand, 36994182 - 36994070
Alignment:
| Q |
344 |
cagactgagaagatgacagcacgtgatcctgtgcaaaaagagatggcaacccataagaaagaggcaaagatgaaccaggcagagctagataagctggcag |
443 |
Q |
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| T |
36994182 |
cagacagagaagatgacggcacatgatcctttgcaaaaagagatggcaacccaaaagaaagaagaaagggttaaccaggctgagcttgataaagaggcgg |
36994083 |
T |
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| Q |
444 |
cacgtgaacacaa |
456 |
Q |
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| T |
36994082 |
cgcgtgaacacaa |
36994070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 344 - 405
Target Start/End: Complemental strand, 36988407 - 36988346
Alignment:
| Q |
344 |
cagactgagaagatgacagcacgtgatcctgtgcaaaaagagatggcaacccataagaaaga |
405 |
Q |
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| T |
36988407 |
cagacagagaagatgacggcacatgatcctttgcaaaaggagatggcaacccaaaagaaaga |
36988346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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