View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8500_low_9 (Length: 471)

Name: NF8500_low_9
Description: NF8500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8500_low_9
NF8500_low_9
[»] chr4 (8 HSPs)
chr4 (1-449)||(48912298-48912746)
chr4 (34-435)||(48957955-48958356)
chr4 (55-435)||(48965161-48965538)
chr4 (199-434)||(48961267-48961504)
chr4 (167-314)||(48974062-48974209)
chr4 (165-268)||(48951185-48951288)
chr4 (31-88)||(48967266-48967323)
chr4 (212-304)||(33396687-33396779)
[»] scaffold0536 (3 HSPs)
scaffold0536 (13-435)||(6478-6900)
scaffold0536 (18-433)||(10462-10877)
scaffold0536 (165-314)||(1541-1690)
[»] chr2 (3 HSPs)
chr2 (1-434)||(13448141-13448571)
chr2 (1-428)||(13439978-13440402)
chr2 (31-434)||(13454642-13455042)
[»] chr6 (2 HSPs)
chr6 (163-431)||(12590140-12590411)
chr6 (163-353)||(12483516-12483706)
[»] chr7 (1 HSPs)
chr7 (17-434)||(3417498-3417912)
[»] chr5 (2 HSPs)
chr5 (20-435)||(12540482-12540894)
chr5 (20-434)||(28385131-28385542)
[»] chr8 (2 HSPs)
chr8 (163-435)||(12641448-12641720)
chr8 (13-112)||(12641771-12641870)


Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 48912746 - 48912298
Alignment:
Q  1 ccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaacct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912746 ccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaacct 48912647  T
Q  101 tctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcacctgtgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912646 tctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcacctgtgt 48912547  T
Q  201 tatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattccacccacaatgt 300  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912546 tatcaacttctcattgtaaaactgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattccacccacaatgt 48912447  T
Q  301 gtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttcaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912446 gtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttcaa 48912347  T
Q  401 acccctttggcaaccatttttctttctcctcttcattgtcatgctccgt 449  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  48912346 acccctttggcaaccatttttctttctcctcttcattgtcattctccgt 48912298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 34 - 435
Target Start/End: Original strand, 48957955 - 48958356
Alignment:
Q  34 aactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattatccctccaaaccaccttctctc 133  Q
    |||||| ||||| | ||| |||||| ||||||||||||||||| ||||||||||| ||||||| |||| || ||| ||||  | |  || | ||||| |     
T  48957955 aactcttgagcacgctgtttgatttcctcagcttcatcaccaccgtccatcaatctcttcacagccttttctatactatctttactcacaatcttctgtt 48958054  T
Q  134 tttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatg 233  Q
    | ||| ||| |||  ||   | ||| || |||||||| |||||||||||||| ||  |||| |  |||||||||||||||||||| ||||||||||||||    
T  48958055 tctcctcaaaaccgtttacacaccactctgttgcaccaacctccaccccaattcctcgcacattagttatcaacttctcattgtagaattgttctccatg 48958154  T
Q  234 catcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattccacccacaatgtgtcataaatgcacccacggctgtgtggctcaga 333  Q
    || |||||||||||||||||||||||| || ||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||||  |||||||||||    
T  48958155 caccggccacgtgatcattggaacccccgcgctaacagcctccacagtggagttccacccgcaatgtgtcataaatgcacccacggcaatgtggctcaga 48958254  T
Q  334 atcataacctgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctctt 433  Q
    |||| ||| ||||| ||||| ||| |||| |||| | | ||||||||||| ||  |||||||||| || || || |||||||| ||| ||||||||||||    
T  48958255 atcaaaacttgtggggcccaccccctaatgatcaaacctttcttctttccaatgtttctctcttcgaatcctttcggcaaccactttcctttctcctctt 48958354  T
Q  434 ca 435  Q
    ||    
T  48958355 ca 48958356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 55 - 435
Target Start/End: Original strand, 48965161 - 48965538
Alignment:
Q  55 attttctcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgc 154  Q
    |||||||||||||||||||||||||||||||||| | ||||| ||||||| ||  |||| || |  |||| ||||||||||||  ||| ||||||    |    
T  48965161 attttctcagcttcatcaccactgtccatcaatctcctcacagccttctctatgctatcactactcaccagcttctctctttcttcaaaaccagtcaaac 48965260  T
Q  155 tccattccgttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattgg 254  Q
     |||||| |||||||| || ||||| ||||||||  |||| | ||||||||  || || ||||| ||||||||||||||    ||||| || ||||| ||    
T  48965261 accattctgttgcaccaacttccactccaatccctcgcacttctgttatcagtttttcgttgtagaattgttctccatgtgaaggccatgtaatcatcgg 48965360  T
Q  255 aacccctgcactaactgcctcaacagtggaattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaa 354  Q
    |||||| |||| ||| ||||| || ||||| ||||| |||||||| |||||||| |||||||| || | |||||||||||||| |||||| |||||||||    
T  48965361 aacccccgcaccaacagcctccactgtggagttccaaccacaatgagtcataaaggcacccacagcggggtggctcagaatcagaacctgcggagcccaa 48965460  T
Q  355 cccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttca 435  Q
    ||| ||||||||| | |   ||||||||| ||  |||||||||| || |||||||| ||||| ||||  ||||||||||||    
T  48965461 cccctaataatcaaacc---cttctttccaatgtttctctcttcgaatccctttggtaaccacttttgcttctcctcttca 48965538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 199 - 434
Target Start/End: Original strand, 48961267 - 48961504
Alignment:
Q  199 gttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaa--ttccacccaca 296  Q
    |||||||||||||| ||||| |||||||||||||| |  ||||| || |||||||| | |||||||||| | |||||||  |||||   |||||||| ||    
T  48961267 gttatcaacttctcgttgtagaattgttctccatgtacgggccatgttatcattgggatccctgcactaccagcctcaatggtggagagttccacccgca 48961366  T
Q  297 atgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccgataattctctct 396  Q
    ||| ||||||||  ||||||| |||||||||| ||| |||||||| ||||| ||||| |||||||| |||| | ||||||||||| | ||  ||||||||    
T  48961367 atgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctct 48961466  T
Q  397 tcaaacccctttggcaaccatttttctttctcctcttc 434  Q
    ||||| || || |||||||| || ||||||||||||||    
T  48961467 tcaaatcctttcggcaaccacttgtctttctcctcttc 48961504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 167 - 314
Target Start/End: Original strand, 48974062 - 48974209
Alignment:
Q  167 caccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgcact 266  Q
    |||| |||||||| ||||| ||  ||||||| |||||||||||||| ||||| ||||||||  ||||||  |||||||||||||||||||||||||||||    
T  48974062 caccaacctccacaccaataccccgcacctgagttatcaacttctcgttgtagaattgttcgtcatgcactggccacgtgatcattggaacccctgcact 48974161  T
Q  267 aactgcctcaacagtggaattccacccacaatgtgtcataaatgcacc 314  Q
    ||| || || || ||||| |||||||| ||||||||||  ||||||||    
T  48974162 aacggcttccacggtggagttccacccgcaatgtgtcaagaatgcacc 48974209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 268
Target Start/End: Original strand, 48951185 - 48951288
Alignment:
Q  165 tgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgca 264  Q
    |||||| || ||||| || |||||| |||| || ||||| | |||||||||||| || || || | ||||| ||||||||||||||| ||||||||| ||    
T  48951185 tgcacctacttccactcctatcccacgcacatgagttatgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctaca 48951284  T
Q  265 ctaa 268  Q
    ||||    
T  48951285 ctaa 48951288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 48967266 - 48967323
Alignment:
Q  31 ccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatc 88  Q
    ||||| ||||||||| |||||||||| ||||||||||||||  || ||||||||||||    
T  48967266 ccaaagtctcgagcacgttgtctgatcttctcagcttcatcgtcattgtccatcaatc 48967323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 304
Target Start/End: Original strand, 33396687 - 33396779
Alignment:
Q  212 cattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattccacccacaatgtgtca 304  Q
    |||||||||||||||| |||| ||| ||||| || | |||||| | ||||||||| ||| | || |  || |||||||| |||||||||||||    
T  33396687 cattgtaaaattgttcaccatacattggccatgtcaccattggtaaccctgcactcactccttccaatgttgaattccatccacaatgtgtca 33396779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 435
Target Start/End: Complemental strand, 6900 - 6478
Alignment:
Q  13 gcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattat 112  Q
    ||||||||||| || |||||||||||||||||||  | | |||||||||||||||| |||||||  |||||||||| | ||||| ||||||||||| |||    
T  6900 gcatgtttagccttatccccaaactctcgagcatactttttgattttctcagcttcgtcaccaccatccatcaatctcctcacagccttctcaatactat 6801  T
Q  113 ccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctc 212  Q
    ||||||  |||||||||||||| ||||||||||||||||  ||||| || | ||| || ||| |||||||||| |   ||||||||||||||||||| ||    
T  6800 ccctccccaccaccttctctctctccccaataccagttgaactccactcagctgcccccaccaccaccccaattcgtcgcacctgtgttatcaacttttc 6701  T
Q  213 attgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattccacccacaatgtgtcataaatgca 312  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||    
T  6700 attgtaaaattgttctccatgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaatgcgtcataaacgca 6601  T
Q  313 cccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggca 412  Q
    ||||  ||| ||||||||| ||||||||| ||||||||||||||| ||||||||| | ||||||||||||||||| |||||||||| || ||||||||||    
T  6600 cccagagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctcttcgaatccctttggca 6501  T
Q  413 accatttttctttctcctcttca 435  Q
    |||||||| ||||||||||||||    
T  6500 accattttcctttctcctcttca 6478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 433
Target Start/End: Complemental strand, 10877 - 10462
Alignment:
Q  18 tttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattatccctc 117  Q
    |||||| || ||||||||||||||||||||| |||||||| |||||||| ||| || | |||||||||||| |||||||||||||||||||  |||||||    
T  10877 tttagccttatccccaaactctcgagcatgtcgtctgattatctcagctacataactattgtccatcaatctcttcacaaccttctcaataccatccctc 10778  T
Q  118 caaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgt 217  Q
    |  |||| ||||||| | ||||||||||||  |  || ||| ||   |||||| || ||| ||||||||||  |||| || |||||||||||||||||||    
T  10777 ccgaccaacttctctttctccccaataccaactaagcaccactctactgcacccacttcccccccaatcccccgcacttgcgttatcaacttctcattgt 10678  T
Q  218 aaaattgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattccacccacaatgtgtcataaatgcacccac 317  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| ||||||||    
T  10677 aaaattgttctccatgcattggccacgtgatcattggaacccctgcactaaccgcctccacggtggaattccacccacaatgtgtcataaacgcacccac 10578  T
Q  318 ggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccat 417  Q
      | |||||||| |||||||||||||| || ||||||||||||||||||| | ||||||||||| | |||| ||| |||||||| || || || | ||||    
T  10577 aacagtgtggcttagaatcataacctgaggggcccaacccttaataatcaaacccttcttctttgcaataactctttcttcaaatcctttcggtagccat 10478  T
Q  418 ttttctttctcctctt 433  Q
    ||||||||||||||||    
T  10477 ttttctttctcctctt 10462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 165 - 314
Target Start/End: Complemental strand, 1690 - 1541
Alignment:
Q  165 tgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgca 264  Q
    ||||||||| ||||| ||||||||||||||||| ||||||||| | || || || ||||| || | ||| |  ||||| |||||||||||||  ||||||    
T  1690 tgcaccgacttccactccaatcccatgcacctgagttatcaacgtttcgttatagaattgatcactatgtactggccatgtgatcattggaattcctgca 1591  T
Q  265 ctaactgcctcaacagtggaattccacccacaatgtgtcataaatgcacc 314  Q
    ||||| |||||     | || ||||||||||||||||||| |||||||||    
T  1590 ctaacagcctcggttatagagttccacccacaatgtgtcaaaaatgcacc 1541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 3e-49; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 13448141 - 13448571
Alignment:
Q  1 ccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaacct 100  Q
    ||||||| ||| || ||| ||||||| || ||||||||||||||| || | ||||| || |||||||||||||||| ||||||||||| | | ||| |||    
T  13448141 ccttcttgaatagcttgtatagctttttctccaaactctcgagcacgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagcct 13448240  T
Q  101 tctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcacctgtgt 200  Q
    |||| ||  |||| || |  || | ||||| ||| ||| | | |||| | || | |||||| ||||||||||| || || ||||| ||  | |  |||||    
T  13448241 tctctatgctatctctgctcactaacttctttctctccgcgacaccactcgtacaccattctgttgcaccgacttcaactccaattcctcggaattgtgt 13448340  T
Q  201 tatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattccacccacaatgt 300  Q
    |||||  ||||||||||| ||||| |||||||| | ||||||||| ||||||||||| || |||||||| ||||| || || || |||| ||| |||||     
T  13448341 tatcagtttctcattgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaacagcctctacggttgagttccccccgcaatgc 13448440  T
Q  301 gtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttcaa 400  Q
    ||||||||| | ||||| || | ||||||||  ||| |||||||||| ||||||||| |||| |||| | ||||||||   |||||| ||||||||||||    
T  13448441 gtcataaatccccccactgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacccttcttc---ccgatatttctctcttcaa 13448537  T
Q  401 acccctttggcaaccatttttctttctcctcttc 434  Q
    | ||||| || ||||| ||||||||||| |||||    
T  13448538 atcccttcggtaaccacttttctttctcttcttc 13448571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 13439978 - 13440402
Alignment:
Q  1 ccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaacct 100  Q
    ||||||| ||| || ||| |||| || || ||||||||| ||||| || | || || || | ||||||||||||| | |||||||||| | ||||| |||    
T  13439978 ccttcttgaatagcttgtgtagccttttctccaaactcttgagcaagtagcctcatatttttagcttcatcaccattctccatcaatctcctcacagcct 13440077  T
Q  101 tctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcacctgtgt 200  Q
    |||| || |||||||| |  |||| ||||||||| ||| ||| |||| |  | | |||||||||||||||||| ||||| ||||| ||  | |  |||||    
T  13440078 tctctatgttatccctgctcaccaacttctctctctccgcaacaccattcttacaccattccgttgcaccgacttccactccaattcctcgaaattgtgt 13440177  T
Q  201 tatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattccacccacaatgt 300  Q
    || ||  ||||| ||||| ||||| |||||||| | ||||||||| ||||||||||| || |||||||| | ||| ||| | || |||| ||| |||||     
T  13440178 taccagtttctcgttgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaacagactctacaattgagttccccccgcaatgc 13440277  T
Q  301 gtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttcaa 400  Q
    ||||||||| | ||||| || | ||||||||  ||| |||| ||||| |||||||||||||| |||| | || || ||   |  ||  |||||||||| |    
T  13440278 gtcataaatccccccaccgcagggtggctcaatatcttaacttgtggggcccaacccttaatgatcaaacccatcctc---ctaatgtttctctcttcga 13440374  T
Q  401 acccctttggcaaccatttttctttctc 428  Q
    | |||||||||||||| |||||||||||    
T  13440375 atccctttggcaaccacttttctttctc 13440402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 31 - 434
Target Start/End: Original strand, 13454642 - 13455042
Alignment:
Q  31 ccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattatccctccaaaccaccttct 130  Q
    ||||||||||||||| ||   ||||| || | |||||||||||||| | ||||||||| | ||||| ||||||| ||  ||||  | |  |||| |||||    
T  13454642 ccaaactctcgagcacgtaccctgatatttttagcttcatcaccaccgcccatcaatctcctcacagccttctctatgctatctttgctcaccaacttct 13454741  T
Q  131 ctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctcc 230  Q
    |||| ||| ||| |||| |||| | |||||| ||||||||||| || |  ||||| ||  | || |||||||| |  ||||| ||||| ||||| |||||    
T  13454742 ctctctccgcaacaccacttgtacaccattctgttgcaccgacttcaattccaattcctcgaacttgtgttattagtttctcgttgtagaattgatctcc 13454841  T
Q  231 atgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattccacccacaatgtgtcataaatgcacccacggctgtgtggctc 330  Q
    ||| |  |||||||| ||||||||||| ||    ||||| ||||| ||  | || |||| ||| ||||| ||||||||| | ||||| || | ||| |||    
T  13454842 atggactggccacgttatcattggaactcccatgctaacagcctctacgattgagttccccccgcaatgcgtcataaatccccccactgcagggtgactc 13454941  T
Q  331 agaatcataacctgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcct 430  Q
    |  ||| |||| ||||| ||||||||| |||| |||| | |||| ||||   ||||  || |||||||||| ||||| |||||||| |||| ||||||||    
T  13454942 aatatcttaacttgtggggcccaacccctaatgatcaaaccctttttct---cgatgtttttctcttcaaatcccttcggcaaccacttttgtttctcct 13455038  T
Q  431 cttc 434  Q
    ||||    
T  13455039 cttc 13455042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 163 - 431
Target Start/End: Complemental strand, 12590411 - 12590140
Alignment:
Q  163 gttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctg 262  Q
    |||||||| || ||||| ||||| |||||||| |  ||||||||||||||||||||||| ||||| |||| ||  ||||| |||||||| ||||  || |    
T  12590411 gttgcaccaacttccactccaattccatgcacatcagttatcaacttctcattgtaaaaatgttcaccattcaatggccatgtgatcatcggaattccag 12590312  T
Q  263 cactaactgcctcaacagtggaattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaat 362  Q
    ||||||| ||||| ||   ||||||||| ||||||||||||||||| || ||||| ||  ||||||||| |||||| || ||||| ||||||||| ||||    
T  12590311 cactaaccgcctccacgacggaattccatccacaatgtgtcataaacgcgcccactgcattgtggctcataatcattacttgtggggcccaacccctaat 12590212  T
Q  363 aatcatagccttcttcttt---ccgataattctctcttcaaacccctttggcaaccatttttctttctcctc 431  Q
     |||| | |||||||||||   || ||  ||||||||||||| ||  | ||||||||||||| ||| |||||    
T  12590211 gatcaaacccttcttctttctcccaatgtttctctcttcaaatccactaggcaaccatttttgtttatcctc 12590140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 163 - 353
Target Start/End: Complemental strand, 12483706 - 12483516
Alignment:
Q  163 gttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctg 262  Q
    ||||||||||| ||||| ||||||||  |||| |  ||||| |  |||||||||||||| ||||| || || | |||||||||||||||||||| |||||    
T  12483706 gttgcaccgacttccacaccaatccctcgcacattagttatgagtttctcattgtaaaaatgttcaccgtgaaccggccacgtgatcattggaatccctg 12483607  T
Q  263 cactaactgcctcaacagtggaattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagccca 353  Q
    ||||||| || || |||   |||||||| ||||| || ||||||||||||||||| || | |||||||| |||||  |||||||| |||||    
T  12483606 cactaaccgcttccacaacagaattccatccacagtgagtcataaatgcacccactgcagggtggctcaaaatcagtacctgtggtgccca 12483516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 434
Target Start/End: Complemental strand, 3417912 - 3417498
Alignment:
Q  17 gtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattatccct 116  Q
    ||||||| ||||| |||| |||||||||| || |||| ||    ||||| ||||||| |||||||||||||| | |||   ||||||| || | ||| ||    
T  3417912 gtttagccttctctccaagctctcgagcacgtagtctcataccttcagcctcatcactactgtccatcaatctcctcattgccttctctatgtcatctct 3417813  T
Q  117 ccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattg 216  Q
     |  |||| ||||| ||| ||||||||||||  ||  | |||||| |||||||| || ||||| ||||| ||  | || |||||||| |  |||||||||    
T  3417812 gctcaccaacttctttctctccccaataccatgtgcacgccattctgttgcacctacttccactccaattcctcggacttgtgttattagtttctcattg 3417713  T
Q  217 taaaattgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattccacccacaatgtgtcataaatgcaccca 316  Q
     | ||||| ||||||||   ||||||||| ||||||||||| ||||||| ||| |||||||||   || |||| ||||||||||||||||||| | || |    
T  3417712 aacaattgatctccatgacccggccacgttatcattggaactcctgcaccaacagcctcaacaaatgagttccccccacaatgtgtcataaatcccccta 3417613  T
Q  317 cggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaacca 416  Q
    | || | ||||||||  |||  ||||||||| ||||||||| |||  |||| | |   ||||||||| ||  ||||||| ||||| ||||| ||||||||    
T  3417612 ccgcagggtggctcaatatctgaacctgtggggcccaacccctaacgatcaaacc---cttctttccaatgtttctctcctcaaatcccttcggcaacca 3417516  T
Q  417 tttttctttctcctcttc 434  Q
     ||||||||||| |||||    
T  3417515 cttttctttctcttcttc 3417498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 20 - 435
Target Start/End: Original strand, 12540482 - 12540894
Alignment:
Q  20 tagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattatccctcca 119  Q
    |||| ||||| |||| |||||| ||| || |||| || || |||||||||| |||||  |||||||||| | ||| | ||||||| ||   ||| || |     
T  12540482 tagccttctctccaatctctcgtgcacgtagtctcatattttcagcttcataaccaccatccatcaatctcctcatagccttctctatgccatctctgcc 12540581  T
Q  120 aaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaa 219  Q
    ||||| ||||| ||| |||||| ||||| |||| | |||||| |||||||| || || || ||||| ||  | ||||||||||| |  ||||| ||| |     
T  12540582 aaccaacttctttctctccccattaccatttgtacaccattctgttgcacctacttctactccaattcctcggacctgtgttattagtttctcgttgaat 12540681  T
Q  220 aattgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattccacccacaatgtgtcataaatgcacccacgg 319  Q
    || || ||||||||   ||||||||| ||||||||||| || |||| ||| ||||| ||| | || || | ||||||||||||||||||| | ||||| |    
T  12540682 aagtgatctccatgacacggccacgttatcattggaactcccgcaccaacagcctctacaattgagtttcccccacaatgtgtcataaatccccccaccg 12540781  T
Q  320 ctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccattt 419  Q
    | | ||||||||  ||| |||||||||| ||||||||| |||| |||| | |   ||| ||||| ||  ||||||| ||||| ||||| |||| ||| ||    
T  12540782 cagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacc---cttttttccaatgtttctctcctcaaatcccttcggcatccactt 12540878  T
Q  420 ttctttctcctcttca 435  Q
    ||||||||| ||||||    
T  12540879 ttctttctcttcttca 12540894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 434
Target Start/End: Original strand, 28385131 - 28385542
Alignment:
Q  20 tagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattatccctcca 119  Q
    |||| ||||| || |||||||||||| ||||||| || || ||||||||||| |||| ||||||||||  | ||| | ||||||| || ||||| || |     
T  28385131 tagccttctctcctaactctcgagcacgttgtctcatattttcagcttcatcgccaccgtccatcaatttcctcatagccttctctatgttatctctgct 28385230  T
Q  120 aaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaa 219  Q
     |||| ||||| ||| |||||| ||||| |||| | |||||||||| |||| || ||||| ||||| |   | ||   ||||||||| |||||||||       
T  28385231 caccaacttctttctctccccattaccatttgtacaccattccgttacacctacttccactccaattcttcggactgttgttatcaatttctcattgctg 28385330  T
Q  220 aattgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattccacccacaatgtgtcataaatgcacccacgg 319  Q
    || || ||| ||||    |||||||| ||||||||||| || || | ||| ||||| ||| | || ||||  || |||||||||| |||| | ||||| |    
T  28385331 aagtgatctgcatgacaaggccacgttatcattggaactcccgcgccaacagcctctacaattgagttccctccgcaatgtgtcagaaatccccccaccg 28385430  T
Q  320 ctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccattt 419  Q
    | | || |||||  |||| ||| ||||| ||||||||| | || || | | |   ||||||||| ||  ||||||| ||||| |||||||||| ||| ||    
T  28385431 cagggttgctcaatatcagaacttgtggggcccaacccctgattatgaaacc---cttctttccaatgtttctctcctcaaatccctttggcagccactt 28385527  T
Q  420 ttctttctcctcttc 434  Q
    ||||||||| |||||    
T  28385528 ttctttctcttcttc 28385542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 163 - 435
Target Start/End: Complemental strand, 12641720 - 12641448
Alignment:
Q  163 gttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctg 262  Q
    |||||||| ||||||||||||||||   ||||    ||||||| ||||||||| || || |||||||| ||||  ||||||||||||||||||| |||||    
T  12641720 gttgcacccacctccaccccaatccttcgcacaacagttatcagcttctcattatagaactgttctccttgcactggccacgtgatcattggaatccctg 12641621  T
Q  263 cactaactgcctcaacagtggaattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaat 362  Q
    ||||||| ||||| ||   ||| ||| |||| ||||| ||||| ||||||||||| || | |||||| | |||||| || ||||| |||||  || ||||    
T  12641620 cactaacagcctctaccaaggagttcgacccgcaatgcgtcatgaatgcacccacagcagcgtggcttaaaatcattacttgtggggcccactccctaat 12641521  T
Q  363 aatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttca 435  Q
     || | | | ||||| ||| | | | |||||||||| || || || |||||||| ||||||||||||||||||    
T  12641520 gataaaacctttcttattttcaacatttctctcttcgaatcctttaggcaaccacttttctttctcctcttca 12641448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 12641870 - 12641771
Alignment:
Q  13 gcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattat 112  Q
    |||||| |||| || | |||||||||| ||||| |||||||||||| || |||||||||||||  ||||||||||| | ||||| | ||||| ||| |||    
T  12641870 gcatgtgtagcctttttcccaaactcttgagcacgttgtctgatttccttagcttcatcaccatcgtccatcaatctcctcacagctttctctatactat 12641771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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