View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8501_high_1 (Length: 492)
Name: NF8501_high_1
Description: NF8501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8501_high_1 |
 | |
|
| [»] chr8 (5 HSPs) |
| |
|
| [»] chr6 (3 HSPs) |
| |
|
| [»] scaffold0009 (1 HSPs) |
| | |
|
| [»] scaffold0134 (1 HSPs) |
| | |
|
| [»] scaffold0163 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 395; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 6 - 492
Target Start/End: Original strand, 23581870 - 23582356
Alignment:
| Q |
6 |
atggacatcaccaattttaagcacctctggtcatcggtattatgttttatttttggatgattattctgattttttgtggacgttccctataagtcacaaa |
105 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
23581870 |
atggacatcgccgattttaagcacctctggtcatcggtattatgttttattttttgatgattattatgattttttgtggacgttccctataaatcacaaa |
23581969 |
T |
|
| Q |
106 |
tctcaagtttttgaaatgttcactacactttctaatcaaattcgcacacaattttcccaaactgtcaaatgttttcaatgtgataatgggcgtgaataca |
205 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23581970 |
tctcaagtttttgaaatgtttactacactttctaatcaaattcacacacaattttcgcaaactatcaaatgttttcaatgtgataaagggcgtgaataca |
23582069 |
T |
|
| Q |
206 |
acaatacattgtttcataaatattgtgctgataatggtcttattttccgtttctcttgtccttacacttcatctcaaaatggcaaagcggaacgtcaaat |
305 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||| |
|
|
| T |
23582070 |
acaatacattgtttcataaatattgtgttgataatggtcttattttccgtttctcttgtcctcacacttcatctcaaaatggcaaagcggaaagtaaaat |
23582169 |
T |
|
| Q |
306 |
acgcaccattaacaacatgattcgcactcttctcgcccattcgtctgttcctccctcattttggcatcatgcccttcaaatggctacttatcttcttaat |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23582170 |
acgcaccattaacaacatgattcgcactcttcttgctcattcgtccgttcctacctcattttggcatcatgcccttcaaatggctacttatcttcttaat |
23582269 |
T |
|
| Q |
406 |
atccttcctcgaaagaatttgtcaaatcattctcctactcaacttttgtttattcgtgatccctcctacacacatcttcgtgtcttt |
492 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||| ||||||||||| |
|
|
| T |
23582270 |
atccttcctcgaaagaatttgtcaaatcattctcctactcaacttttgtatcattgtgatccctcctacacacattttcgtgtcttt |
23582356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 217 - 398
Target Start/End: Complemental strand, 40272712 - 40272531
Alignment:
| Q |
217 |
tttcataaatattgtgctgataatggtcttattttccgtttctcttgtccttacacttcatctcaaaatggcaaagcggaacgtcaaatacgcaccatta |
316 |
Q |
| |
|
||||| |||||||| |||||| |||| ||| |||| |||||||||||||| |||| || || |||||||| ||||||||||| ||||| | ||||||| |
|
|
| T |
40272712 |
tttcaaaaatattgcgctgatcatggccttgtttttcgtttctcttgtccccacacatcctcacaaaatgggaaagcggaacgaaaaataagaaccatta |
40272613 |
T |
|
| Q |
317 |
acaacatgattcgcactcttctcgcccattcgtctgttcctccctcattttggcatcatgcccttcaaatggctacttatct |
398 |
Q |
| |
|
| || ||||| || | | | || || ||||| |||||||| || ||||||||||||||||| |||| ||||| |||||||| |
|
|
| T |
40272612 |
ataatatgatacgtattatgctagctcattcttctgttcccccgtcattttggcatcatgctattcacatggcaacttatct |
40272531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 308
Target Start/End: Complemental strand, 7233693 - 7233635
Alignment:
| Q |
250 |
ttccgtttctcttgtccttacacttcatctcaaaatggcaaagcggaacgtcaaatacg |
308 |
Q |
| |
|
|||||||| |||||||| |||||||| | |||||||||||||| |||||| ||||||| |
|
|
| T |
7233693 |
ttccgtttttcttgtccacacacttcaccacaaaatggcaaagctgaacgtaaaatacg |
7233635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 36038966 - 36039012
Alignment:
| Q |
253 |
cgtttctcttgtccttacacttcatctcaaaatggcaaagcggaacg |
299 |
Q |
| |
|
|||||||| |||||||| ||||| ||||||||||||||||| ||||| |
|
|
| T |
36038966 |
cgtttctcgtgtccttatacttcttctcaaaatggcaaagctgaacg |
36039012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 320
Target Start/End: Complemental strand, 38616382 - 38616310
Alignment:
| Q |
248 |
ttttccgtttctcttgtccttacacttcatctcaaaatggcaaagcggaacgtcaaatacgcaccattaacaa |
320 |
Q |
| |
|
|||| ||||| |||||||||||||| || ||||||||||| ||| | ||||| ||||||| |||||||||| |
|
|
| T |
38616382 |
tttttcgtttttcttgtccttacacatcttctcaaaatggtaaatctgaacgaaaaatacggtccattaacaa |
38616310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 7 - 492
Target Start/End: Complemental strand, 22208879 - 22208394
Alignment:
| Q |
7 |
tggacatcaccaattttaagcacctctggtcatcggtattatgttttatttttggatgattattctgattttttgtggacgttccctataagtcacaaat |
106 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||| |
|
|
| T |
22208879 |
tggacatcaccgattttaagtacctctggtcatcagtattatattttatttttggatgattattctgatattttgtggatgttccctataagttacaaat |
22208780 |
T |
|
| Q |
107 |
ctcaagtttttgaaatgttcactacactttctaatcaaattcgcacacaattttcccaaactgtcaaatgttttcaatgtgataatgggcgtgaatacaa |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
22208779 |
ctcaagtttttgaaatgttcactacactttctaatcaaattcgcacacaattttcccaaactgtcaaatgttttcaatgtgataatgggtgtgaatacaa |
22208680 |
T |
|
| Q |
207 |
caatacattgtttcataaatattgtgctgataatggtcttattttccgtttctcttgtccttacacttcatctcaaaatggcaaagcggaacgtcaaata |
306 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||| || ||||| |
|
|
| T |
22208679 |
caatacattgtttcataaatattgtactgataatggtcttattttctgtttctcttgtcctcacacttcatctcaacatggcaaagcggaatgtaaaata |
22208580 |
T |
|
| Q |
307 |
cgcaccattaacaacatgattcgcactcttctcgcccattcgtctgttcctccctcattttggcatcatgcccttcaaatggctacttatcttcttaata |
406 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| ||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
22208579 |
cgcaccattaacaacatgattcacactcttctcgctcattcatccgttcctccctcattttggcatcatgctcttcaaatggctacttatcttcttaata |
22208480 |
T |
|
| Q |
407 |
tccttcctcgaaagaatttgtcaaatcattctcctactcaacttttgtttattcgtgatccctcctacacacatcttcgtgtcttt |
492 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||| | | ||||||||||||||||| ||||||||||||||| |
|
|
| T |
22208479 |
tccttccccgaaagaatttttcaaatcattctcctactcaacttttatatcatcgtgatccctcctacattcatcttcgtgtcttt |
22208394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 224 - 413
Target Start/End: Original strand, 33163994 - 33164183
Alignment:
| Q |
224 |
aatattgtgctgataatggtcttattttccgtttctcttgtccttacacttcatctcaaaatggcaaagcggaacgtcaaatacgcaccattaacaacat |
323 |
Q |
| |
|
|||||||| || |||||| |||||||| || |||||||| ||| |||| || || |||||||| ||||||||||| ||||| | |||||||| || || |
|
|
| T |
33163994 |
aatattgtactactaatggccttatttttcgcttctcttgccctcacacatcctcccaaaatgggaaagcggaacgaaaaataagaaccattaataatat |
33164093 |
T |
|
| Q |
324 |
gattcgcactcttctcgcccattcgtctgttcctccctcattttggcatcatgcccttcaaatggctacttatcttcttaatatccttcc |
413 |
Q |
| |
|
|||||||||| | || || || || |||||||| || ||||||||||||||| ||||| ||||| |||||| | || ||||| ||||| |
|
|
| T |
33164094 |
gattcgcactatgctagctcactcttctgttcccccacaattttggcatcatgcacttcacatggcaacttatttgctaaatattcttcc |
33164183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 217 - 396
Target Start/End: Original strand, 16592577 - 16592756
Alignment:
| Q |
217 |
tttcataaatattgtgctgataatggtcttattttccgtttctcttgtccttacacttcatctcaaaatggcaaagcggaacgtcaaatacgcaccatta |
316 |
Q |
| |
|
||||| |||||||| ||||| |||| ||| |||| |||||||||||||| |||| || || |||||||| ||||||||||| ||||| || |||| |
|
|
| T |
16592577 |
tttcacaaatattgcactgatcatggccttgtttttcgtttctcttgtccacacacatcctcacaaaatgggaaagcggaacgaaaaataaaaacaatta |
16592676 |
T |
|
| Q |
317 |
acaacatgattcgcactcttctcgcccattcgtctgttcctccctcattttggcatcatgcccttcaaatggctacttat |
396 |
Q |
| |
|
| || ||||| |||||| | || || ||||| | |||||| || ||||||||||||||||| ||||| ||||| |||||| |
|
|
| T |
16592677 |
ataatatgatacgcactatgctagctcattcttttgttcccccgtcattttggcatcatgctcttcacatggcaacttat |
16592756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 6 - 485
Target Start/End: Complemental strand, 48101916 - 48101437
Alignment:
| Q |
6 |
atggacatcaccaattttaagcacctctggtcatcggtattatgttttatttttggatgattattctgattttttgtggacgttccctataagtcacaaa |
105 |
Q |
| |
|
|||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
48101916 |
atggacttcaccgattttaagtacctctggtcatcggtattatgttttatttttggatgattattctgattttttgtggacattccctataagtaacaaa |
48101817 |
T |
|
| Q |
106 |
tctcaagtttttgaaatgttcactacactttctaatcaaattcgcacacaattttcccaaactgtcaaatgttttcaatgtgataatgggcgtgaataca |
205 |
Q |
| |
|
|| |||||||||||||||||||| |||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
48101816 |
tcacaagtttttgaaatgttcacattactttccaatcaaattcacacacaattttctcaaactgtcaaatgttttcaatgtgataatgggcgtgaatata |
48101717 |
T |
|
| Q |
206 |
acaatacattgtttcataaatattgtgctgataatggtcttattttccgtttctcttgtccttacacttcatctcaaaatggcaaagcggaacgtcaaat |
305 |
Q |
| |
|
| ||||||| |||||||| ||||||| ||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||| |||| |
|
|
| T |
48101716 |
ataatacatcatttcataagtattgtgatgataatggtcttgttttccgtttctcttgtcctcatacttcatctcaaaatggcaaagcggaacgtaaaat |
48101617 |
T |
|
| Q |
306 |
acgcaccattaacaacatgattcgcactcttctcgcccattcgtctgttcctccctcattttggcatcatgcccttcaaatggctacttatcttcttaat |
405 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
48101616 |
acgcaccattaacaacatgattcgtactcttctcgctcattcgtctgtacctccctcattttggcatcatgctcttcaaatggctacttaccttcttaat |
48101517 |
T |
|
| Q |
406 |
atccttcctcgaaagaatttgtcaaatcattctcctactcaacttttgtttattcgtgatccctcctacacacatcttcg |
485 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
48101516 |
attcttcctcgaaagaatttgtcaaatcactctcctactcaacttttgtatcatcgtgatccctcctacacacatcttcg |
48101437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 92
Target Start/End: Original strand, 33284999 - 33285085
Alignment:
| Q |
6 |
atggacatcaccaattttaagcacctctggtcatcggtattatgttttatttttggatgattattctgattttttgtggacgttccc |
92 |
Q |
| |
|
||||||||| |||||||||||| | | ||||| ||||||||||||||||||||| | |||||| ||||||||||||| ||||| |
|
|
| T |
33284999 |
atggacatctccaattttaagctcgacaggtcacaaatattatgttttatttttggataactattctaattttttgtggacattccc |
33285085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 329
Target Start/End: Original strand, 34011716 - 34011797
Alignment:
| Q |
248 |
ttttccgtttctcttgtccttacacttcatctcaaaatggcaaagcggaacgtcaaatacgcaccattaacaacatgattcg |
329 |
Q |
| |
|
|||| ||||| |||||||||||||| || ||||||||||| ||| | ||||| ||||||| |||||||||| || ||||| |
|
|
| T |
34011716 |
tttttcgtttgtcttgtccttacacatcttctcaaaatggtaaatctgaacgaaaaatacggtccattaacaatattattcg |
34011797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 6 - 485
Target Start/End: Complemental strand, 9934634 - 9934155
Alignment:
| Q |
6 |
atggacatcaccaattttaagcacctctggtcatcggtattatgttttatttttggatgattattctgattttttgtggacgttccctataagtcacaaa |
105 |
Q |
| |
|
|||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
9934634 |
atggacttcaccgattttaagtacctctggtcatcggtattatgttttatttttggatgattattctgattttttgtggacattccctataagtaacaaa |
9934535 |
T |
|
| Q |
106 |
tctcaagtttttgaaatgttcactacactttctaatcaaattcgcacacaattttcccaaactgtcaaatgttttcaatgtgataatgggcgtgaataca |
205 |
Q |
| |
|
|| |||||||||||||||||||| |||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
9934534 |
tcacaagtttttgaaatgttcacattactttccaatcaaattcacacacaattttctcaaactgtcaaatgttttcaatgtgataatgggcgtgaatata |
9934435 |
T |
|
| Q |
206 |
acaatacattgtttcataaatattgtgctgataatggtcttattttccgtttctcttgtccttacacttcatctcaaaatggcaaagcggaacgtcaaat |
305 |
Q |
| |
|
| ||||||| |||||||| ||||||| ||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||| |||| |
|
|
| T |
9934434 |
ataatacatcatttcataagtattgtgatgataatggtcttgttttccgtttctcttgtcctcatacttcatctcaaaatggcaaagcggaacgtaaaat |
9934335 |
T |
|
| Q |
306 |
acgcaccattaacaacatgattcgcactcttctcgcccattcgtctgttcctccctcattttggcatcatgcccttcaaatggctacttatcttcttaat |
405 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
9934334 |
acgcaccattaacaacatgattcgtactcttctcgctcattcgtctgtacctccctcattttggcatcatgctcttcaaatggctacttaccttcttaat |
9934235 |
T |
|
| Q |
406 |
atccttcctcgaaagaatttgtcaaatcattctcctactcaacttttgtttattcgtgatccctcctacacacatcttcg |
485 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
9934234 |
attcttcctcgaaagaatttgtcaaatcactctcctactcaacttttgtatcatcgtgatccctcctacacacatcttcg |
9934155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 224 - 413
Target Start/End: Original strand, 45032606 - 45032795
Alignment:
| Q |
224 |
aatattgtgctgataatggtcttattttccgtttctcttgtccttacacttcatctcaaaatggcaaagcggaacgtcaaatacgcaccattaacaacat |
323 |
Q |
| |
|
|||||||| || |||||| |||||||| || |||||||| ||| |||| || || |||||||| ||||||||||| ||||| | |||||||| || || |
|
|
| T |
45032606 |
aatattgtactactaatggccttatttttcgcttctcttgccctcacacatcctcccaaaatggaaaagcggaacgaaaaataagaaccattaataatat |
45032705 |
T |
|
| Q |
324 |
gattcgcactcttctcgcccattcgtctgttcctccctcattttggcatcatgcccttcaaatggctacttatcttcttaatatccttcc |
413 |
Q |
| |
|
|||||||||| | || || || || |||||||| || ||||||||||||||| ||||| ||||| |||||| | || ||||| ||||| |
|
|
| T |
45032706 |
gattcgcactatgctagctcactcttctgttcccccacaattttggcatcatgcacttcacatggcaacttatttgctaaatattcttcc |
45032795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 237 - 413
Target Start/End: Original strand, 45027771 - 45027947
Alignment:
| Q |
237 |
taatggtcttattttccgtttctcttgtccttacacttcatctcaaaatggcaaagcggaacgtcaaatacgcaccattaacaacatgattcgcactctt |
336 |
Q |
| |
|
|||||| |||||||| || |||||||| ||| |||| || || |||||||| ||||||||||| ||||| | |||||||| || |||||||||||| | |
|
|
| T |
45027771 |
taatggccttatttttcgcttctcttgccctcacacatcctcccaaaatggtaaagcggaacgaaaaataagaaccattaataatatgattcgcactatg |
45027870 |
T |
|
| Q |
337 |
ctcgcccattcgtctgttcctccctcattttggcatcatgcccttcaaatggctacttatcttcttaatatccttcc |
413 |
Q |
| |
|
|| || || || |||||||| || ||||||||||||||| ||||| ||||| |||||| | || ||||| ||||| |
|
|
| T |
45027871 |
ctagctcactcttctgttcccccacaattttggcatcatgcacttcacatggcaacttatttgctaaatattcttcc |
45027947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 237 - 413
Target Start/End: Original strand, 24207989 - 24208167
Alignment:
| Q |
237 |
taatggtcttattttccgtttctcttgtccttacacttcatctcaaaatggcaaagcggaacgtcaaatacgcaccattaacaacatgattcgcactctt |
336 |
Q |
| |
|
|||||| |||||||| || |||||||| ||| |||| || || |||||||| ||||||||||| ||||| | |||||||| || ||||||| |||| | |
|
|
| T |
24207989 |
taatggccttatttttcgcttctcttgccctcacacatcctcccaaaatgggaaagcggaacgaaaaataagaaccattaataatatgattcacactatg |
24208088 |
T |
|
| Q |
337 |
ctcgcccattcgtctg--ttcctccctcattttggcatcatgcccttcaaatggctacttatcttcttaatatccttcc |
413 |
Q |
| |
|
|| || || || |||| ||| || | ||||||||||||||| ||||| ||||| |||||| | || ||||| ||||| |
|
|
| T |
24208089 |
ctggctcactcttctgctctcccccataattttggcatcatgcacttcacatggcaacttatttgctaaatattcttcc |
24208167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 154; Significance: 2e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 6 - 347
Target Start/End: Original strand, 4703652 - 4703993
Alignment:
| Q |
6 |
atggacatcaccaattttaagcacctctggtcatcggtattatgttttatttttggatgattattctgattttttgtggacgttccctataagtcacaaa |
105 |
Q |
| |
|
||||| ||| ||| |||||||| ||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||| || ||| |||| | | |
|
|
| T |
4703652 |
atggatatcgccagttttaagctcctctggtcattggtattatattttattcttggatgattattctgattttttgtggacatttcctgtaagcaaggag |
4703751 |
T |
|
| Q |
106 |
tctcaagtttttgaaatgttcactacactttctaatcaaattcgcacacaattttcccaaactgtcaaatgttttcaatgtgataatgggcgtgaataca |
205 |
Q |
| |
|
||| |||||||||||||||| | | ||||||| |||||||||| ||||||||||| |||| ||| |||||||||| |||||||||||||| |||||| | |
|
|
| T |
4703752 |
tcttaagtttttgaaatgttaatttcactttccaatcaaattcatacacaattttctcaaattgttaaatgttttcgatgtgataatgggcatgaatata |
4703851 |
T |
|
| Q |
206 |
acaatacattgtttcataaatattgtgctgataatggtcttattttccgtttctcttgtccttacacttcatctcaaaatggcaaagcggaacgtcaaat |
305 |
Q |
| |
|
| ||| || | |||||||||||||||| ||||| | |||||||||| ||||||||||| ||| |||| |||||| |||||||| ||||||||||| | || |
|
|
| T |
4703852 |
ataattcactatttcataaatattgtgttgatacttgtcttatttttcgtttctcttgccctcacacatcatcttaaaatggcgaagcggaacgtaagat |
4703951 |
T |
|
| Q |
306 |
acgcaccattaacaacatgattcgcactcttctcgcccattc |
347 |
Q |
| |
|
|| ||| ||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
4703952 |
acacactattaacaacatgatttgcactcttctcgctcattc |
4703993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 273 - 454
Target Start/End: Complemental strand, 9992169 - 9991989
Alignment:
| Q |
273 |
ttcatctcaaaatggcaaagcggaacgtcaaatacgcaccattaacaacatgattcgcactcttctcgcccattcgtctgttcctccctcattttggcat |
372 |
Q |
| |
|
|||||||||||||| |||||| || || ||||||| || |||||| |||||||||||| ||||||||| ||||||| |||| ||||||||| ||||||| |
|
|
| T |
9992169 |
ttcatctcaaaatgataaagcgaaatgtaaaatacgtacgattaactacatgattcgcagtcttctcgctcattcgtatgtttctccctcatcttggcat |
9992070 |
T |
|
| Q |
373 |
catgcccttcaaatggctacttatcttcttaatatccttcctcgaaagaatttgtcaaatcattctcctactcaacttttgt |
454 |
Q |
| |
|
||||| ||||||||||| || ||||||||||||||| || | | ||||||| || ||||||| |||| |||||| |||||| |
|
|
| T |
9992069 |
catgcacttcaaatggccacatatcttcttaatatcatttc-caaaagaatctgacaaatcactctcgaactcaaattttgt |
9991989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 377
Target Start/End: Complemental strand, 29008643 - 29008309
Alignment:
| Q |
43 |
tattatgttttatttttggatgattattctgattttttgtggacgttccctataagtcacaaatctcaagtttttgaaatgttcactacactttctaatc |
142 |
Q |
| |
|
|||||||| ||||||| ||||||||| | |||| |||||||| || ||||| || ||||||||||| ||||| ||||||| ||||| | |||| |
|
|
| T |
29008643 |
tattatgtcctatttttagatgattatacaaatttcttgtggacttttcctattagcagaaaatctcaagtatttgacatgttcaagtcacttacaaatc |
29008544 |
T |
|
| Q |
143 |
aaattcgcacacaattttcccaaactgtcaaatgttttcaatgtgataatgggcgtgaatacaacaatacattgtttcataaatattgtgctgataatgg |
242 |
Q |
| |
|
|||| ||||| |||| |||| | | |||| |||||||||||||||||| ||||||| |||||| | ||||| ||||||| || || |||| |
|
|
| T |
29008543 |
ttattcaaacacagtttttacaaagtataaaatcttttcaatgtgataatggcggtgaatataacaatgagctatttcaacaatattgaactaatcatgg |
29008444 |
T |
|
| Q |
243 |
tcttattttccgtttctcttgtccttacacttcatctcaaaatggcaaagcggaacgtcaaatacgcaccattaacaacatgattcgcactcttctcgcc |
342 |
Q |
| |
|
|||| |||| || |||||||| ||| |||| || || |||||||| ||||||||||| ||||| ||||||||||| ||||| |||||| | || || |
|
|
| T |
29008443 |
tcttgtttttcgcttctcttgccctcacacatcgtcacaaaatgggaaagcggaacgaaaaataaaaaccattaacaatatgatacgcactatgctagct |
29008344 |
T |
|
| Q |
343 |
cattcgtctgttcctccctcattttggcatcatgc |
377 |
Q |
| |
|
||||| |||| || || || |||||||||||||| |
|
|
| T |
29008343 |
cattcttctgagccaccatcgttttggcatcatgc |
29008309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 286
Target Start/End: Complemental strand, 9992282 - 9992211
Alignment:
| Q |
217 |
tttcataaatattgtgctgataatggtcttattttc--cgtttctcttgtccttacacttcatctcaaaatg |
286 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| | || || ||| ||| |||||||||||||||||| |
|
|
| T |
9992282 |
tttcattaatattgtgctgataatggtcttatttttttcattactgttgccctcacacttcatctcaaaatg |
9992211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 169 - 377
Target Start/End: Original strand, 29786 - 29993
Alignment:
| Q |
169 |
gtcaaatgttttcaatgtgataatgggcgtgaatacaacaatacattgtttcataaatattgtgctgataatggtcttattttccgtttctcttgtcctt |
268 |
Q |
| |
|
||||||| | |||||||||| ||||| ||||||| || ||| || ||||| ||||||| ||||| |||||||| ||||| |||||||||||||| |
|
|
| T |
29786 |
gtcaaatctgttcaatgtgacaatggtggtgaatataataatgagttatttcaacaatattgcactgatcatggtcttgttttc-gtttctcttgtcctc |
29884 |
T |
|
| Q |
269 |
acacttcatctcaaaatggcaaagcggaacgtcaaatacgcaccattaacaacatgattcgcactcttctcgcccattcgtctgttcctccctcattttg |
368 |
Q |
| |
|
|||| || || |||||||| ||||||||||| ||||| | |||||||| || ||||| |||||| | || || ||||| | |||||| ||||| ||||| |
|
|
| T |
29885 |
acacatcctcacaaaatgggaaagcggaacgcaaaataagaaccattaataatatgatacgcactatgctagctcattcttttgttcccccctcgttttg |
29984 |
T |
|
| Q |
369 |
gcatcatgc |
377 |
Q |
| |
|
||||||||| |
|
|
| T |
29985 |
gcatcatgc |
29993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 239 - 399
Target Start/End: Original strand, 36578 - 36738
Alignment:
| Q |
239 |
atggtcttattttccgtttctcttgtccttacacttcatctcaaaatggcaaagcggaacgtcaaatacgcaccattaacaacatgattcgcactcttct |
338 |
Q |
| |
|
|||||||| |||| || |||||||| ||| |||| || || |||||||| ||||||||||| ||||| | ||||||||||| ||||| |||||| | || |
|
|
| T |
36578 |
atggtcttgtttttcgcttctcttgccctcacacatcgtcacaaaatgggaaagcggaacgaaaaataagaaccattaacaatatgatacgcactatgct |
36677 |
T |
|
| Q |
339 |
cgcccattcgtctgttcctccctcattttggcatcatgcccttcaaatggctacttatctt |
399 |
Q |
| |
|
|| ||||| |||||||| || || |||||||||||||| || || ||| | ||||||||| |
|
|
| T |
36678 |
agctcattcttctgttccaccatcgttttggcatcatgctctccatatgacaacttatctt |
36738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 16659269 - 16659183
Alignment:
| Q |
6 |
atggacatcaccaattttaagcacctctggtcatcggtattatgttttatttttggatgattattctgattttttgtggacgttccc |
92 |
Q |
| |
|
||||||||| |||||||||||| | | ||||| ||||||||||||||||||||| | |||||| ||||||||||||| ||||| |
|
|
| T |
16659269 |
atggacatctccaattttaagctcgacaggtcacaaatattatgttttatttttggataactattctaattttttgtggacattccc |
16659183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0163 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0163
Description:
Target: scaffold0163; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 33458 - 33409
Alignment:
| Q |
43 |
tattatgttttatttttggatgattattctgattttttgtggacgttccc |
92 |
Q |
| |
|
||||||||||||||||||||| | | |||| ||||||||||||| ||||| |
|
|
| T |
33458 |
tattatgttttatttttggataactgttctaattttttgtggacattccc |
33409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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