View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8501_high_10 (Length: 319)

Name: NF8501_high_10
Description: NF8501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8501_high_10
NF8501_high_10
[»] chr7 (3 HSPs)
chr7 (47-305)||(45243369-45243628)
chr7 (47-302)||(45230125-45230363)
chr7 (163-297)||(45237739-45237876)
[»] chr2 (12 HSPs)
chr2 (172-290)||(8579704-8579821)
chr2 (232-293)||(9061355-9061416)
chr2 (172-293)||(9291748-9291868)
chr2 (110-166)||(8576659-8576716)
chr2 (233-293)||(10347650-10347710)
chr2 (196-290)||(9284389-9284483)
chr2 (208-290)||(9364489-9364571)
chr2 (172-290)||(10335682-10335799)
chr2 (232-293)||(8573722-8573783)
chr2 (178-251)||(12019126-12019198)
chr2 (3-43)||(15262243-15262283)
chr2 (2-54)||(27339003-27339055)
[»] chr1 (6 HSPs)
chr1 (177-290)||(29423096-29423208)
chr1 (177-290)||(29467979-29468091)
chr1 (208-290)||(29453503-29453585)
chr1 (232-290)||(29443520-29443578)
chr1 (1-41)||(52268243-52268283)
chr1 (1-54)||(37346175-37346228)
[»] chr4 (4 HSPs)
chr4 (1-54)||(5787120-5787173)
chr4 (172-285)||(561009-561121)
chr4 (1-41)||(3768041-3768080)
chr4 (2-54)||(37910482-37910534)
[»] chr8 (3 HSPs)
chr8 (182-286)||(41966911-41967014)
chr8 (2-54)||(16295628-16295680)
chr8 (2-54)||(16303330-16303382)
[»] chr5 (3 HSPs)
chr5 (1-41)||(25346869-25346909)
chr5 (1-54)||(21091080-21091133)
chr5 (1-54)||(31078160-31078213)
[»] chr6 (4 HSPs)
chr6 (1-54)||(9315099-9315152)
chr6 (2-54)||(391103-391155)
chr6 (2-54)||(10789241-10789293)
chr6 (2-54)||(12255404-12255456)


Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 47 - 305
Target Start/End: Original strand, 45243369 - 45243628
Alignment:
Q  47 caattaaaaaagtttaggtaccgatatcatgtgatggtatcattgaaatcaactgatatgcaaacattcagataaacaataagtaccttctcttgtatgt 146  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45243369 caatcaaaaaagtttaagtaccgatatcatgtgatggtatcattgaaatcaactgatatgcaaacattcagataaacaacaagtaccttctcttgtatgt 45243468  T
Q  147 gctt-cgcatctcaacttgtgcaggaatcaataggtaaggaaggtgataccaaggctttcagcacaaatcattacttcattgaaagtaggaattccttga 245  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45243469 gctttcgcatctcaacttgtgcaggaatcaataggtaaggaaggtgataccaaggctttcagcacaaatcattacttcattgaaagtaggaattccttga 45243568  T
Q  246 acataagtaagttattcactgttgagatcataccaaaacagcttcctaggatgtacatac 305  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  45243569 acataagtaagttgttcactgttgagatcataccaaaacagcttcctaggatgtacatac 45243628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 47 - 302
Target Start/End: Original strand, 45230125 - 45230363
Alignment:
Q  47 caattaaaaaagtttaggtaccgata-tcatgtgatggtatcattgaaatcaactgatatgcaaacattcagataaacaataagtaccttctcttgtatg 145  Q
    |||| |||||||||||  | |||||| |||| |||||  |||||||||||||||||||| ||||||||||||||||||||||| |||| |||| ||||      
T  45230125 caatcaaaaaagtttaactcccgataatcatatgatgagatcattgaaatcaactgatacgcaaacattcagataaacaataaataccatctcatgta-- 45230222  T
Q  146 tgcttcgcatctcaacttgtgcaggaatcaataggtaaggaaggtgataccaaggctttcagcacaaatcattacttcattgaaagtaggaattccttga 245  Q
                   ||| ||| |||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45230223 ---------------cttttgccggaatcgataggtaaggatggtgatac-aaggctttcagcacaaatcattacttcattgaaagtaggaattccttga 45230306  T
Q  246 acataagtaagttattcactgttgagatcataccaaaacagcttcctaggatgtaca 302  Q
    |||| ||||| || |||||| |||| |||||||||||||||||||| ||||| ||||    
T  45230307 acatgagtaacttgttcactcttgaaatcataccaaaacagcttccaaggatttaca 45230363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 163 - 297
Target Start/End: Original strand, 45237739 - 45237876
Alignment:
Q  163 tgtgcaggaatcaataggtaaggaagg----tgataccaaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacataagtaagtt 258  Q
    ||||| |||||||||||||||||||||    || ||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||| ||    
T  45237739 tgtgctggaatcaataggtaaggaaggaaggtggtac-aaggctttcagcacaaatcattacttcattcaaagtaggaattcctcgaacataaataactt 45237837  T
Q  259 attcactgttgagatcataccaaaacagcttcctaggat 297  Q
     |||| | ||||| ||||||||||||| |||||||||||    
T  45237838 gttcattcttgaggtcataccaaaacaacttcctaggat 45237876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 172 - 290
Target Start/End: Complemental strand, 8579821 - 8579704
Alignment:
Q  172 atcaataggtaaggaaggtgataccaaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacataagtaagttattcactgttgag 271  Q
    ||||||||| |||||||||| ||  |||| || || || |||||||   |||||||||| ||||||||||||||||| |||||| || |||||| |||||    
T  8579821 atcaataggcaaggaaggtggtag-aagggttccaacataaatcatagtttcattgaaattaggaattccttgaacacaagtaacttcttcacttttgag 8579723  T
Q  272 atcataccaaaacagcttc 290  Q
    |||||||||||||||||||    
T  8579722 atcataccaaaacagcttc 8579704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 232 - 293
Target Start/End: Complemental strand, 9061416 - 9061355
Alignment:
Q  232 taggaattccttgaacataagtaagttattcactgttgagatcataccaaaacagcttccta 293  Q
    |||||||||||| ||||||| ||| || |||||| |||||||||||||||||||||||||||    
T  9061416 taggaattccttcaacataactaacttgttcactcttgagatcataccaaaacagcttccta 9061355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 172 - 293
Target Start/End: Original strand, 9291748 - 9291868
Alignment:
Q  172 atcaataggtaaggaaggtgataccaaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacataagtaagttattcactgttgag 271  Q
    ||||| ||| |||||||||| ||  ||| |||||| ||||||||||  ||||||  ||| |||||||||||| ||||||| ||| || |||||| || |     
T  9291748 atcaacagggaaggaaggtggtag-aagactttcaacacaaatcatagcttcatccaaattaggaattccttcaacataactaatttgttcactcttcaa 9291846  T
Q  272 atcataccaaaacagcttccta 293  Q
    ||||||||||||||||||||||    
T  9291847 atcataccaaaacagcttccta 9291868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 8576716 - 8576659
Alignment:
Q  110 acattcagataaacaataagtaccttctcttgtatgt-gcttcgcatctcaacttgtg 166  Q
    ||||||||||||||||||||||||||||||||  | | |||| |||||||||||||||    
T  8576716 acattcagataaacaataagtaccttctcttgcttatagctttgcatctcaacttgtg 8576659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 293
Target Start/End: Original strand, 10347650 - 10347710
Alignment:
Q  233 aggaattccttgaacataagtaagttattcactgttgagatcataccaaaacagcttccta 293  Q
    ||||||||||| ||||||| ||| || |||||| || | ||||||||||||||||||||||    
T  10347650 aggaattccttcaacataactaatttgttcactcttcaaatcataccaaaacagcttccta 10347710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 290
Target Start/End: Complemental strand, 9284483 - 9284389
Alignment:
Q  196 caaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacataagtaagttattcactgttgagatcataccaaaacagcttc 290  Q
    |||| |||||| ||||||||||  ||||||  ||| |||||||||||| ||||||| ||| ||  ||||| || | ||||||||||| |||||||    
T  9284483 caagactttcaacacaaatcatagcttcatccaaattaggaattccttcaacataaataacttgctcactcttcaaatcataccaaaccagcttc 9284389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 290
Target Start/End: Original strand, 9364489 - 9364571
Alignment:
Q  208 cacaaatcattacttcattgaaagtaggaattccttgaacataagtaagttattcactgttgagatcataccaaaacagcttc 290  Q
    ||||||||||  ||||||| | | ||||||||||| |||||  |||||  | |||||| |||||||| |||||||||||||||    
T  9364489 cacaaatcatagcttcattcatattaggaattcctggaacactagtaacgttttcactcttgagatcgtaccaaaacagcttc 9364571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 290
Target Start/End: Original strand, 10335682 - 10335799
Alignment:
Q  172 atcaataggtaaggaaggtgataccaaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacataagtaagttattcactgttgag 271  Q
    ||||| ||||||||||||||| || ||| ||| || ||||||||||    ||||  ||| |||||||||||| ||||||| ||| || |||||| || |     
T  10335682 atcaacaggtaaggaaggtgaaac-aagacttccaacacaaatcatagtgtcatccaaattaggaattccttcaacataactaatttgttcactcttcaa 10335780  T
Q  272 atcataccaaaacagcttc 290  Q
    |||||||||||||| ||||    
T  10335781 atcataccaaaacaacttc 10335799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 293
Target Start/End: Complemental strand, 8573783 - 8573722
Alignment:
Q  232 taggaattccttgaacataagtaagttattcactgttgagatcataccaaaacagcttccta 293  Q
    |||||||||||| ||||||| | | || |||||| || | ||||||||||||||||||||||    
T  8573783 taggaattccttcaacataactgacttgttcactcttcaaatcataccaaaacagcttccta 8573722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 251
Target Start/End: Complemental strand, 12019198 - 12019126
Alignment:
Q  178 aggtaaggaaggtgataccaaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacataa 251  Q
    |||||||||||||| ||| ||| ||| || ||||||||||  |||||| |||| |||||||||||| |||||||    
T  12019198 aggtaaggaaggtggtac-aagacttccaacacaaatcatggcttcatcgaaattaggaattccttcaacataa 12019126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 15262243 - 15262283
Alignment:
Q  3 atcatgtgtttgatgcgcacaggataacaaaaaggatatga 43  Q
    |||||||||||||||| |||| ||||||||| |||||||||    
T  15262243 atcatgtgtttgatgcacacatgataacaaataggatatga 15262283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 27339055 - 27339003
Alignment:
Q  2 tatcatgtgtttgatgcgcacaggataacaaaaaggatatgagtacaattaaa 54  Q
    |||||||||||||||||||||| |||||||||  |||||| | || |||||||    
T  27339055 tatcatgtgtttgatgcgcacatgataacaaaccggatatcattataattaaa 27339003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 290
Target Start/End: Original strand, 29423096 - 29423208
Alignment:
Q  177 taggtaaggaaggtgataccaaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacataagtaagttattcactgttgagatcat 276  Q
    |||| |||||||||||||| ||| ||| || ||||||||||  ||| || |||| ||||||||||||||||| || ||| || |||||| ||||||||||    
T  29423096 tagggaaggaaggtgatac-aagacttccaacacaaatcatggcttgatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcat 29423194  T
Q  277 accaaaacagcttc 290  Q
    ||||||||||||||    
T  29423195 accaaaacagcttc 29423208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 177 - 290
Target Start/End: Complemental strand, 29468091 - 29467979
Alignment:
Q  177 taggtaaggaaggtgataccaaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacataagtaagttattcactgttgagatcat 276  Q
    |||| |||||||||| ||| ||| ||| || ||||||||||  ||||||| ||| |||||||||||| ||||||| |||  | |||||| ||||||||||    
T  29468091 tagggaaggaaggtggtac-aagacttccaacacaaatcatagcttcattcaaattaggaattccttcaacataattaacatgttcactcttgagatcat 29467993  T
Q  277 accaaaacagcttc 290  Q
    ||||||||| ||||    
T  29467992 accaaaacaacttc 29467979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 208 - 290
Target Start/End: Complemental strand, 29453585 - 29453503
Alignment:
Q  208 cacaaatcattacttcattgaaagtaggaattccttgaacataagtaagttattcactgttgagatcataccaaaacagcttc 290  Q
    ||||||||||  ||| || |||| |||||||||||| |||| || ||| || |||||| ||||||||||||||||||||||||    
T  29453585 cacaaatcatagcttgatcgaaattaggaattccttcaacacaactaacttgttcactcttgagatcataccaaaacagcttc 29453503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 290
Target Start/End: Complemental strand, 29443578 - 29443520
Alignment:
Q  232 taggaattccttgaacataagtaagttattcactgttgagatcataccaaaacagcttc 290  Q
    |||||||||||| ||||||| |||   ||||||| ||||||||||||||||||||||||    
T  29443578 taggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttc 29443520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 52268283 - 52268243
Alignment:
Q  1 ctatcatgtgtttgatgcgcacaggataacaaaaaggatat 41  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  52268283 ctatcatgtgtttgatgcgcacatgataacaaacaggatat 52268243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 37346175 - 37346228
Alignment:
Q  1 ctatcatgtgtttgatgcgcacaggataacaaaaaggatatgagtacaattaaa 54  Q
    ||||||||||||||||||||||| ||||||||| | ||||| | || |||||||    
T  37346175 ctatcatgtgtttgatgcgcacatgataacaaacatgatatcattataattaaa 37346228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 5787120 - 5787173
Alignment:
Q  1 ctatcatgtgtttgatgcgcacaggataacaaaaaggatatgagtacaattaaa 54  Q
    ||||||||||||||||||||||| ||||||||| ||||||| | || |||||||    
T  5787120 ctatcatgtgtttgatgcgcacatgataacaaacaggatatcattataattaaa 5787173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 285
Target Start/End: Original strand, 561009 - 561121
Alignment:
Q  172 atcaataggtaaggaaggtgataccaaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacataagtaagttattcactgttgag 271  Q
    ||||||||| |||||||||| ||  ||||||| || || ||||||| |||| ||||| | ||||||||||| ||||| | |||  |  || ||| |||||    
T  561009 atcaataggcaaggaaggtggtag-aaggcttccaacataaatcataactttattgatattaggaattcctggaacacaggtagctcttttacttttgag 561107  T
Q  272 atcataccaaaaca 285  Q
    ||||||||||||||    
T  561108 atcataccaaaaca 561121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 3768080 - 3768041
Alignment:
Q  1 ctatcatgtgtttgatgcgcacaggataacaaaaaggatat 41  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  3768080 ctatcatgtgtttgatgcgcacatgataa-aaaaaggatat 3768041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 37910482 - 37910534
Alignment:
Q  2 tatcatgtgtttgatgcgcacaggataacaaaaaggatatgagtacaattaaa 54  Q
    ||||||||||||||||| |||| ||||||||| ||||||| | || |||||||    
T  37910482 tatcatgtgtttgatgcacacatgataacaaacaggatatcattataattaaa 37910534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 286
Target Start/End: Complemental strand, 41967014 - 41966911
Alignment:
Q  182 aaggaaggtgataccaaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacataagtaagttattcactgttgagatcataccaa 281  Q
    |||||||||| ||| ||| ||| || |||||| |||  ||||||  ||| |||||||||||| ||||||||||| || |||||| || | ||||||||||    
T  41967014 aaggaaggtggtac-aagacttccaacacaaaacatggcttcatcaaaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaa 41966916  T
Q  282 aacag 286  Q
    |||||    
T  41966915 aacag 41966911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 16295680 - 16295628
Alignment:
Q  2 tatcatgtgtttgatgcgcacaggataacaaaaaggatatgagtacaattaaa 54  Q
    |||||||||||||||| ||||| ||||||||| ||||||| | || |||||||    
T  16295680 tatcatgtgtttgatgtgcacatgataacaaacaggatatcattataattaaa 16295628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 16303382 - 16303330
Alignment:
Q  2 tatcatgtgtttgatgcgcacaggataacaaaaaggatatgagtacaattaaa 54  Q
    |||||||||||||||| ||||| ||||||||| ||||||| | || |||||||    
T  16303382 tatcatgtgtttgatgtgcacatgataacaaacaggatatcattataattaaa 16303330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 25346869 - 25346909
Alignment:
Q  1 ctatcatgtgtttgatgcgcacaggataacaaaaaggatat 41  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  25346869 ctatcatgtgtttgatgcgcacatgataacaaataggatat 25346909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 21091080 - 21091133
Alignment:
Q  1 ctatcatgtgtttgatgcgcacaggataacaaaaaggatatgagtacaattaaa 54  Q
    ||||||||||||||||||||||| ||||||||| | ||||| | || |||||||    
T  21091080 ctatcatgtgtttgatgcgcacatgataacaaacaagatatcattataattaaa 21091133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 31078213 - 31078160
Alignment:
Q  1 ctatcatgtgtttgatgcgcacaggataacaaaaaggatatgagtacaattaaa 54  Q
    ||||||||||||||||||||||| ||||||||| | ||||| | || |||||||    
T  31078213 ctatcatgtgtttgatgcgcacatgataacaaacatgatatcattataattaaa 31078160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 9315152 - 9315099
Alignment:
Q  1 ctatcatgtgtttgatgcgcacaggataacaaaaaggatatgagtacaattaaa 54  Q
    ||||||||||||||||||||||| ||||||||| | ||||| | || |||||||    
T  9315152 ctatcatgtgtttgatgcgcacatgataacaaacaagatatcattataattaaa 9315099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 391103 - 391155
Alignment:
Q  2 tatcatgtgtttgatgcgcacaggataacaaaaaggatatgagtacaattaaa 54  Q
    |||||||||||||||| ||||| ||||||||| ||||||| | || |||||||    
T  391103 tatcatgtgtttgatgtgcacatgataacaaataggatatcattataattaaa 391155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 10789241 - 10789293
Alignment:
Q  2 tatcatgtgtttgatgcgcacaggataacaaaaaggatatgagtacaattaaa 54  Q
    |||||||||||||||||| ||| ||||||||| ||||||| | || |||||||    
T  10789241 tatcatgtgtttgatgcgaacatgataacaaacaggatatcattataattaaa 10789293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 12255456 - 12255404
Alignment:
Q  2 tatcatgtgtttgatgcgcacaggataacaaaaaggatatgagtacaattaaa 54  Q
    |||||||||||||||||||||| ||||||||| | ||||| | || |||||||    
T  12255456 tatcatgtgtttgatgcgcacatgataacaaacatgatatcattataattaaa 12255404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University