View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8501_high_20 (Length: 229)
Name: NF8501_high_20
Description: NF8501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8501_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 51858203 - 51858414
Alignment:
| Q |
1 |
caaccattgttgccaacttcgaaatctagcaaacttcgtcacttagatattttgactaacaatcacatctcacacacattcccatctaatgtgttagatt |
100 |
Q |
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| T |
51858203 |
caaccattgttgccaacttcgaaatctagcaaacttcgtcacttagatattttgactaacaatcacatctcacacacattcccatctaatgtgttagatt |
51858302 |
T |
|
| Q |
101 |
tcatgaacttacgagttaaggaaatgtttcaagcacatacactcagtttttctagatatgggcgtggtttaatttcatttgagccccttaatggtgttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
51858303 |
tcatgaacttacgagttaaggaaatgtttcaagcacatactctcagtttttctagatatgggcgtggtttaattgcatttgagccccttaatggtgttta |
51858402 |
T |
|
| Q |
201 |
taaagtagtgtt |
212 |
Q |
| |
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|||||||||||| |
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| T |
51858403 |
taaagtagtgtt |
51858414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 34865268 - 34865075
Alignment:
| Q |
19 |
tcgaaatctagcaaacttcgtcacttagatattttgactaacaatcacatctcacacacattcccatctaatgtgttagatttcatgaacttacgagtta |
118 |
Q |
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||||||||| |||||||||||||||||||| || | ||||||| ||| || |||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
34865268 |
tcgaaatctggcaaacttcgtcacttagatgttgtaactaacactcatatgtcacacactttcccgtctaatgtgttagatttcatgaacttacgagtta |
34865169 |
T |
|
| Q |
119 |
aggaaatgtttcaagcacatacactcagtttttctagatatgggcgtggtttaatttcatttgagccccttaatggtgtttataaagtagtgtt |
212 |
Q |
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| T |
34865168 |
tggaattgtttcaagcatatactatcaatttttctagagatggaggtgatttaattgcatttgagcccctttctgatgtttataaagtagtgtt |
34865075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 135
Target Start/End: Original strand, 34145347 - 34145460
Alignment:
| Q |
22 |
aaatctagcaaacttcgtcacttagatattttgactaaca-atcacatctcacacacattcccatctaatgtgttagatttcatgaacttacgagttaag |
120 |
Q |
| |
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|||||| | ||| |||||||||||||| | |||||||||| ||| ||| ||||||||| ||||| || |||||||||||||||||||| ||||| | |
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| T |
34145347 |
aaatctggaaaatttcgtcacttagatgtcttgactaacacatc-cataacacacacatacccattcaacgtgttagatttcatgaacttgcgagtaaga |
34145445 |
T |
|
| Q |
121 |
gaaatgtttcaagca |
135 |
Q |
| |
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||| ||||||||||| |
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| T |
34145446 |
gaattgtttcaagca |
34145460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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