View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8501_high_21 (Length: 228)
Name: NF8501_high_21
Description: NF8501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8501_high_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 41043688 - 41043437
Alignment:
| Q |
1 |
cggctgctgctgccaaggacgctttcatatactgcatgacaaacaagacattttagctaaaatatattttgaaattatgtttttgagatat-catgtcat |
99 |
Q |
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| T |
41043688 |
cggctgctgctgccaaggatgctttcatatactgcatgacaaacaagacattttagctaaaatatattttgaaattatgtttttgagatatccatgtcat |
41043589 |
T |
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| Q |
100 |
cccaaagaccatgattatgaa----------------------acaattcacaaaaacagtttaaattaatgg-nnnnnnncataccttgtcataacatt |
176 |
Q |
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| T |
41043588 |
cccaaagaccatgattatgaaacatcactgaaataataagtgcacaattcacaaaaacagtttaaattaatggttttttttcataccttgtcataacatt |
41043489 |
T |
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| Q |
177 |
ggaattctccaattccaggaaacctccaagttccattgctttctggatatga |
228 |
Q |
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| T |
41043488 |
ggaattctccaattccaggaaacctccaagttccattgctttctggatatga |
41043437 |
T |
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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 4371600 - 4371652
Alignment:
| Q |
160 |
taccttgtcataacattggaattctccaattccaggaaacctccaagttccat |
212 |
Q |
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| T |
4371600 |
taccttgtcatagcattggaattctccaattcctggaaacttccaagttccat |
4371652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 4363931 - 4363983
Alignment:
| Q |
160 |
taccttgtcataacattggaattctccaattccaggaaacctccaagttccat |
212 |
Q |
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| T |
4363931 |
taccttgtcatagcactggaattctccaattcctggaaacttccaagttccat |
4363983 |
T |
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