View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8501_high_22 (Length: 221)
Name: NF8501_high_22
Description: NF8501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8501_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 54146941 - 54146750
Alignment:
| Q |
19 |
aaaagcaagcagcataaagaggaaaccttcacatccaccaatactgatctatcatcaacaagcaaatcaaacatatcccaaacttttgggattcgacagc |
118 |
Q |
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| T |
54146941 |
aaaagcaagcaacataaagaggaaaccttcacatccaccaatactgatctatcatcaacaagcaaatcaaacatatcccaaacttttgggattcgacagc |
54146842 |
T |
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| Q |
119 |
ggaagcgacaagcgattcaaggtggatcaaaacaagttctagatatcatgttaacaatgcatacaagatagggaaagatagataacaccaaa |
210 |
Q |
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| T |
54146841 |
ggaagcgacaagcggttcaaggcggatcaaaacaagttctagatatcatgttaacaatacatacaaaatagggaaagatagataacaacaaa |
54146750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 24131996 - 24131939
Alignment:
| Q |
119 |
ggaagcgacaagcgattcaaggtggatcaaaacaagttctagatatcatgttaacaat |
176 |
Q |
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| T |
24131996 |
ggaagcgacaaacgattcaaggtggatcaaaacaagctcttgataccatgttaacaat |
24131939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 94 - 176
Target Start/End: Complemental strand, 50294903 - 50294821
Alignment:
| Q |
94 |
tcccaaacttttgggattcgacagcggaagcgacaagcgattcaaggtggatcaaaacaagttctagatatcatgttaacaat |
176 |
Q |
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| T |
50294903 |
tcccaaacttttgagattcgacagcggaagcgacaagtagtttaaggtggatcgaaacaagctttagatatcatgttaacaat |
50294821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 127
Target Start/End: Original strand, 1175437 - 1175470
Alignment:
| Q |
94 |
tcccaaacttttgggattcgacagcggaagcgac |
127 |
Q |
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| T |
1175437 |
tcccaaacttttgggattcgacagcggaagcgac |
1175470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 176
Target Start/End: Original strand, 28064509 - 28064603
Alignment:
| Q |
81 |
caaatcaaacatatcccaaacttttgggat-tcgacagcggaagcgacaagcgattcaaggtggatcaaaacaagttctagatatcatgttaacaat |
176 |
Q |
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| T |
28064509 |
caaaccaaacacatcccatacttttgggaactcaatagcggaagcaacaagcagtttaaggtggatcaaaacaagctct--ataccatgttaacaat |
28064603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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