View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8501_high_6 (Length: 434)
Name: NF8501_high_6
Description: NF8501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8501_high_6 |
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| [»] scaffold0169 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 13 - 413
Target Start/End: Complemental strand, 7234760 - 7234360
Alignment:
| Q |
13 |
catcatacccacaatggggaccgtgggaacaacaaccatgggcagctccaccttgtccttaccccacatccaattgggttcgtccaccatcaaatcgttc |
112 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7234760 |
catcatacccacaatggggaccgtggggacaacaaccatgggcagctccaccttgtccttaccccacatccaattgggttcgtccaccatcaaatcgttc |
7234661 |
T |
|
| Q |
113 |
ccccatggctacaggaactcgtccaccacaggcttctagtgttcatgcgccaactccttcaaattatgcacctacagacatcgatgcggcaatgcataat |
212 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7234660 |
ccccgtggctacaggaactcgtccaccacaggcttatagtgctcatgggccaactccttcaaattatgcacctacagacatcgatgcggcaatgcataat |
7234561 |
T |
|
| Q |
213 |
ctgtccttgaatgttcctgatgaaaattggtacatggacactggtgcaacatcacacatgactgcatctcaaggtactctctctacttattctaatttga |
312 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7234560 |
ctgttcttgaatgttcctgatgaaaattggtacatggacactggtgcaacatcacacatgactgcatctcaaggtactctctctacttattctaatttga |
7234461 |
T |
|
| Q |
313 |
gcattaataaaaatatcgtcgttggcagtggacaggaaattccaattcgcggttatggacaaacatacatttccccaccttacccacccttatcattaaa |
412 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7234460 |
gcattaataaaaatatcgttgttggcagtggacaggaaattccaattcgcggttatggacaaacatacatttccccaccttacccacccttatcattaaa |
7234361 |
T |
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| Q |
413 |
t |
413 |
Q |
| |
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| T |
7234360 |
t |
7234360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 19654145 - 19654018
Alignment:
| Q |
13 |
catcatacccacaatggggaccgtgggaacaacaaccatgggcagctccaccttgtccttaccccacatccaattgggttcgtccaccatcaaatcgttc |
112 |
Q |
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||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||| |
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| T |
19654145 |
catcatacccacaatggggaccgtggggacaaaaaccatgggcagctccaccttgtcgttaccccacatccaattgagttcttccaccatcaaatcgttc |
19654046 |
T |
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| Q |
113 |
ccccatggctacaggaactcgtccacca |
140 |
Q |
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||| |||||||||||| |||||||||| |
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| T |
19654045 |
ccctttggctacaggaattcgtccacca |
19654018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 167 - 413
Target Start/End: Original strand, 17613632 - 17613862
Alignment:
| Q |
167 |
tccttcaaattatgcacctacagacatcgatgcggcaatgcataatctgtccttgaatgttcctgatgaaaattggtacatggacactggtgcaacatca |
266 |
Q |
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||||||||||||||||||||| |||||||||| | || || ||| |||||||||||||||||||||||| |||||||||||||| ||||||||| ||| |
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| T |
17613632 |
tccttcaaattatgcacctactgacatcgatgttgtgattcaaaatttgtccttgaatgttcctgatgaaacttggtacatggacattggtgcaacttca |
17613731 |
T |
|
| Q |
267 |
cacatgactgcatctcaaggtactctctctacttattctaatttgagcattaataaaaatatcgtcgttggcagtggacaggaaattccaattcgcggtt |
366 |
Q |
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||| |||||| |||| | ||||||| ||||||| ||||||||||| | || | |||||||||| ||||||| |||| |||| |
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| T |
17613732 |
cacttgactggatctta----------------tattctagtttgagctttaataaaaatgttgttgatggcagtggatttgaaattcttgttcgtggtt |
17613815 |
T |
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| Q |
367 |
atggacaaacatacatttccccaccttacccacccttatcattaaat |
413 |
Q |
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|||||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
17613816 |
atggacaaacatacctttccccaccatacccacccttatcattaaat |
17613862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 320
Target Start/End: Original strand, 1850821 - 1850905
Alignment:
| Q |
236 |
aaattggtacatggacactggtgcaacatcacacatgactgcatctcaaggtactctctctacttattctaatttgagcattaat |
320 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||| | ||||||| |||||| |||||| ||||||||||| |||| |
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| T |
1850821 |
aaattggtacatggacactggtgccacatcccacatgacttccgagcaaggtaatctctcgtcttattttaatttgagcaataat |
1850905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 320
Target Start/End: Original strand, 36647258 - 36647342
Alignment:
| Q |
236 |
aaattggtacatggacactggtgcaacatcacacatgactgcatctcaaggtactctctctacttattctaatttgagcattaat |
320 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||| | ||||||| |||||| |||||| ||||||||||| |||| |
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| T |
36647258 |
aaattggtacatggacactggtgccacatcccacatgacttccgagcaaggtaatctctcgtcttattttaatttgagcaataat |
36647342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0169
Description:
Target: scaffold0169; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 320
Target Start/End: Original strand, 14150 - 14234
Alignment:
| Q |
236 |
aaattggtacatggacactggtgcaacatcacacatgactgcatctcaaggtactctctctacttattctaatttgagcattaat |
320 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||| | ||||||| |||||| |||||| ||||||||||| |||| |
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| T |
14150 |
aaattggtacatggacactggtgccacatcccacatgacttccgagcaaggtaatctctcgtcttattttaatttgagcaataat |
14234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 320
Target Start/End: Original strand, 19653 - 19737
Alignment:
| Q |
236 |
aaattggtacatggacactggtgcaacatcacacatgactgcatctcaaggtactctctctacttattctaatttgagcattaat |
320 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||| | ||||||| |||||| |||||| ||||||||||| |||| |
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| T |
19653 |
aaattggtacatggacactggtgccacatcccacatgacttccgagcaaggtaatctctcgtcttattttaatttgagcaataat |
19737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 320
Target Start/End: Original strand, 7081921 - 7082005
Alignment:
| Q |
236 |
aaattggtacatggacactggtgcaacatcacacatgactgcatctcaaggtactctctctacttattctaatttgagcattaat |
320 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||| | ||||||| |||||| |||||| ||||||||||| |||| |
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| T |
7081921 |
aaattggtacatggacactggtgccacatcccacatgacttccgagcaaggtaatctctcgtcttattttaatttgagcaataat |
7082005 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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