View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8501_high_9 (Length: 348)
Name: NF8501_high_9
Description: NF8501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8501_high_9 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 31880880 - 31880548
Alignment:
| Q |
1 |
cacaactttttccaagaatttctcaaaacccttannnnnnnaaaatttaaaattgggtgaatcttccaaaaaatgagattccatggcatttcagtagtga |
100 |
Q |
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| T |
31880880 |
cacaactttttccaagaatttctcaaaaccattatttttttaaa-tttaaaattgggtgaatcttccaaaaaatgagattccatggcatttcagtagtga |
31880782 |
T |
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| Q |
101 |
ttttcgttcatatacagcacaataaacctatgatacactgtctctaaccacaataagtcagctaatccctaaccctagccatttctaaaaatgtgtaaaa |
200 |
Q |
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| T |
31880781 |
ttttcgttcatatacagcacaataaacctataatacacagtctctaaccacaataagtcatctaatccctaaccctagccatttctaaaaatgtgtaaaa |
31880682 |
T |
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| Q |
201 |
acatgannnnnnnnnncttttaaattaaaagcaagagaaaggaatagagataaaaatcaaacctgtaaatgatgacgaatgcagcaagtacaagataaag |
300 |
Q |
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| T |
31880681 |
acatga--ttttttttcttttaaatttaaagcaagagagaggaatagagataaaagtcaaacctgtaaatgatgatgaatgcagcaagtacaggataaag |
31880584 |
T |
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| Q |
301 |
atgatgtagtgtgtgagtgcttgacttgaatttgat |
336 |
Q |
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| T |
31880583 |
atgatgtagtgtgtgagtgcttggcttgaatttgat |
31880548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 331
Target Start/End: Original strand, 110658 - 110688
Alignment:
| Q |
301 |
atgatgtagtgtgtgagtgcttgacttgaat |
331 |
Q |
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| T |
110658 |
atgatgtagtgtgtgagtgcttgacttgaat |
110688 |
T |
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