View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8501_low_1 (Length: 797)
Name: NF8501_low_1
Description: NF8501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8501_low_1 |
 | |
|
| [»] scaffold0105 (6 HSPs) |
| | |
|
| [»] scaffold0345 (1 HSPs) |
| | |
|
| [»] scaffold0295 (1 HSPs) |
| | |
|
| [»] scaffold0041 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-176; HSPs: 27)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-176
Query Start/End: Original strand, 47 - 765
Target Start/End: Original strand, 8183614 - 8184332
Alignment:
| Q |
47 |
agcaggcgttgcttctgctctacttgagaaatcaacattttggtttttatcctttacactctatgaacgacaacaagactatgcgatgttgtttgcatgc |
146 |
Q |
| |
|
||||||| |||||||||| ||||||||| | ||||||| ||| |||||||||||| | ||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
8183614 |
agcaggcattgcttctgcattacttgagagaccaacattgaggtctttatcctttactaacaatgaacggcgacaagactatgcgatgttgtttgcatgc |
8183713 |
T |
|
| Q |
147 |
attaggaactgcccttcacttagagagatcatattcgacaacaagcgttgggtaagtcggataagaagtgtagagaattataattctttaatggatattg |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8183714 |
attaggaactgcccttcacttagagagatcatattcgactacaagcgttgggtaagtcggataagaagtgtagagaattataattctttaatggatattg |
8183813 |
T |
|
| Q |
247 |
ttataagccctcaaataaagtctcgta-gtttgcaaggcagtggtgcgttaaaagataaaaacatcaaaatgtttgcttcagtattcccaaatttgcagc |
345 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||| || | || ||||| |||||||||| |||||| |||||||| || ||||| |||||||||| |
|
|
| T |
8183814 |
ttataagccctcaaataaagtctcttaagtttgcaaatcaatcgttggttaacagataaaaacgtcaaaaaatttgcttccgtgttccccaatttgcagc |
8183913 |
T |
|
| Q |
346 |
tacttgatttgagtcatttcattgatatgtctgaagaagatatttgacaaattttaaggagatgttgtgaaattagagaattgaacttagcctagttttc |
445 |
Q |
| |
|
|||||||||||||||| | |||| || |||||| ||| |||| |||||||||||||| |||||||| |||||||| ||||||||||| || || | |
|
|
| T |
8183914 |
ggcttgatttgagtcattgctttgacatttctgaaaaaggtattactcaaattttaaggagttgttgtgagattagagatttgaacttagcttacattcc |
8184013 |
T |
|
| Q |
446 |
aagagtgaggctacgcaaaatgaactttgaagtttctaaactggagtcgttgaacttgtcacataaaag--tagatgataaagcactctttgcgatctca |
543 |
Q |
| |
|
|| | ||||||| ||| |||||||||||||||| | ||||| ||| ||||||||||||||||| ||| | ||||||| |||||||| ||| |||||| |
|
|
| T |
8184014 |
aaaaatgaggctgagcagaatgaactttgaagttccgaaactagaggtgttgaacttgtcacatacaagagttgatgatatagcactctatgcaatctca |
8184113 |
T |
|
| Q |
544 |
aagagttgctctgggcttttacaactgtcattggaaaattgttgtaatg-tcacagagaagggagtgaagcatgtggtagaaaactgcacacaattgaga |
642 |
Q |
| |
|
|||||||| | ||||||||| |||||| | ||||||||||| | |||| ||||||| ||||||||||||||||| ||||||| ||||||||| ||| | |
|
|
| T |
8184114 |
aagagttgttgtgggcttttggaactgttactggaaaattgt-gaaatgatcacagatgagggagtgaagcatgtgctagaaaattgcacacaactgaaa |
8184212 |
T |
|
| Q |
643 |
gtcatcaatttgacgaactgtcataaagtgcacgctgatgttgttgcaccgatgctgctttcaaggccatcgttgagaaagataattgctccaactcttc |
742 |
Q |
| |
|
|| |||||||||| ||||||| ||||||||| |||||||||| || | ||| | ||||||||||||||||||| |||||||||| ||||||||| | |
|
|
| T |
8184213 |
gtgatcaatttgaggaactgtgataaagtgctggctgatgttg---catccatgatactttcaaggccatcgttgataaagataattcctccaactcctg |
8184309 |
T |
|
| Q |
743 |
ttgccctcaactctgaaaccatt |
765 |
Q |
| |
|
| |||||||| |||||||||||| |
|
|
| T |
8184310 |
tagccctcaattctgaaaccatt |
8184332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 328 - 730
Target Start/End: Original strand, 8186957 - 8187361
Alignment:
| Q |
328 |
tattcccaaatttgcagctacttgatttgagtcatttcattgatatgtctgaagaagatatttgacaaattttaaggagatgttgtgaaattagagaatt |
427 |
Q |
| |
|
||||||| ||||||||| | |||||||||||||||| | ||| || |||||||||| |||||| ||| |||| | |||||||||||| ||||| || || |
|
|
| T |
8186957 |
tattccccaatttgcagttgcttgatttgagtcattgctatgacatatctgaagaaggtatttgtcaagttttgaagagatgttgtgagattagggattt |
8187056 |
T |
|
| Q |
428 |
gaacttagcctagttttcaagagtgaggctacgcaaaatgaactttgaagtttctaaactggagtcgttgaacttgtcacataaaag--tagatgataaa |
525 |
Q |
| |
|
|||||||||||| | | ||||||| |||| | ||||||||||||| |||| ||||||||| ||||||||||||||||| ||| | ||||||||| |
|
|
| T |
8187057 |
gaacttagcctactgtccaagagttgggctctccggaatgaactttgaaatttccaaactggaggtgttgaacttgtcacatacaagagttgatgataaa |
8187156 |
T |
|
| Q |
526 |
gcactctttgcgatctcaaagagttgctctgggcttttacaactgtcattggaaaattgttgtaatgtcacagagaagggagtgaagcatgtggtagaaa |
625 |
Q |
| |
|
|||| | ||| || ||||||||||| | ||||||||| || ||| | ||||||||||| |||| ||||||| ||||||||||| | |||||||| ||| |
|
|
| T |
8187157 |
acactttatgcaatttcaaagagttgttgtgggcttttgcagttgttactggaaaattgtcgtaacgtcacagggaagggagtgatggatgtggtaaaaa |
8187256 |
T |
|
| Q |
626 |
actgcacacaattgagagtcatcaatttgacgaactgtcataaagtgcacgctgatgttgttgcaccgatgctgctttcaaggccatcgttgagaaagat |
725 |
Q |
| |
|
||||||| ||| ||| || ||||| ||| | ||| |||| ||||| |||||||||||| ||||| | |||||||||||||| |||||||||| |
|
|
| T |
8187257 |
actgcacgcaactgacagaagtcaatctgaggcgctgctataatgtgcatcctgatgttgttgactcgatgatattttcaaggccatcgctgagaaagat |
8187356 |
T |
|
| Q |
726 |
aattg |
730 |
Q |
| |
|
||||| |
|
|
| T |
8187357 |
aattg |
8187361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 388 - 734
Target Start/End: Original strand, 7225809 - 7226157
Alignment:
| Q |
388 |
tttgacaaattttaaggagatgttgtgaaattagagaattgaacttagcctagttttcaagagtgaggctacgcaaaatgaactttgaagtttctaaact |
487 |
Q |
| |
|
|||| ||| ||||| ||||||||||| | |||||| | ||||||||| |||| | | ||||||||| ||||||||| ||||||||||||||| || | |
|
|
| T |
7225809 |
tttgtcaagttttacggagatgttgtaagattagacatttgaacttatcctactgtccaagagtgaagctacgcaacatgaactttgaagttctcgaatt |
7225908 |
T |
|
| Q |
488 |
ggagtcgttgaacttgtcacataaaag--tagatgataaagcactctttgcgatctcaaagagttgctctgggcttttacaactgtcattggaaaattgt |
585 |
Q |
| |
|
|||| |||||||||||||||| ||| | ||||| |||| ||| || ||| ||||||||||| | ||| ||||| ||||| | | |||||| |||| |
|
|
| T |
7225909 |
ggaggtcttgaacttgtcacatacaagagttgatgacaaaggacttcgtgtgatatcaaagagttgttgtggacttttgcaactattactggaaagttgt |
7226008 |
T |
|
| Q |
586 |
tgtaatgtcacagagaagggagtgaagcatgtggtagaaaactgcacacaattgagagtcatcaatttgacgaactgtcataaagtgcacgctgatgttg |
685 |
Q |
| |
|
| | | ||||| ||||||||| ||||||| |||||||||||||||| ||| |||||| |||||||||| |||||| | | |||||| | |||| ||| |
|
|
| T |
7226009 |
tttgaggtcaccgagaagggattgaagcacgtggtagaaaactgcaagcaactgagagagatcaatttgaagaactgccgtggagtgcaaggtgatattg |
7226108 |
T |
|
| Q |
686 |
ttgcaccgatgctgctttcaaggccatcgttgagaaagataattgctcc |
734 |
Q |
| |
|
|||| | ||| | |||||||||||| |||||||||||||||||||| |
|
|
| T |
7226109 |
ttgcctcaatggtttcttcaaggccatcattgagaaagataattgctcc |
7226157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 464 - 633
Target Start/End: Complemental strand, 547010 - 546839
Alignment:
| Q |
464 |
aatgaactttgaagtttctaaactggagtcgttgaacttgtcacataaaa--gtagatgataaagcactctttgcgatctcaaagagttgctctgggctt |
561 |
Q |
| |
|
|||||||||||||||| ||||| ||||| | |||||||||||| || || || ||||| || |||||| || ||||||||||||||| | ||||||| |
|
|
| T |
547010 |
aatgaactttgaagttcctaaattggaggtggtgaacttgtcacgtacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggctt |
546911 |
T |
|
| Q |
562 |
ttacaactgtcattggaaaattgttgtaatgtcacagagaagggagtgaagcatgtggtagaaaactgcaca |
633 |
Q |
| |
|
|| || ||| | ||||| | |||| | |||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
546910 |
ttggaattgttactggaagaatgttttcatgtcacagagaagggagtgaaacatgtgctagaaaactgcaca |
546839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 397 - 636
Target Start/End: Complemental strand, 553643 - 553402
Alignment:
| Q |
397 |
ttttaaggagatgttgtgaaattagagaattgaacttagcctagttttcaagagtgaggctacgcaaaatgaactttgaagtttctaaactggagtcgtt |
496 |
Q |
| |
|
||||||||| ||||||| | |||||| | ||||||||| || | ||||||||||| | |||| | | |||||||| ||||| ||||||||| ||| |
|
|
| T |
553643 |
ttttaaggacatgttgtaacattagacatttgaacttaacccgctgttcaagagtgaagttacgtacattgaactttaaagttctcaaactggaggtgtt |
553544 |
T |
|
| Q |
497 |
gaacttgtcacataaaag--tagatgataaagcactctttgcgatctcaaagagttgctctgggcttttacaactgtcattggaaaattgttgtaatgtc |
594 |
Q |
| |
|
|||||||||| || ||| | |||||| ||||||| || ||| ||||||||||| ||||||||||| ||||||| ||| ||||| || ||||| |
|
|
| T |
553543 |
gaacttgtcatttacaagagttgatgatgaagcacttaatgtgatttcaaagagttgttctgggcttttgcaactgttgttgttttattgtagtgatgtc |
553444 |
T |
|
| Q |
595 |
acagagaagggagtgaagcatgtggtagaaaactgcacacaa |
636 |
Q |
| |
|
||||| || |||||||| |||||||||||||||||||||||| |
|
|
| T |
553443 |
acagataaaggagtgaatcatgtggtagaaaactgcacacaa |
553402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 293 - 506
Target Start/End: Complemental strand, 1600687 - 1600474
Alignment:
| Q |
293 |
gttaaaagataaaaacatcaaaatgtttgcttc-agtattcccaaatttgcagctacttgatttgagtcatttcattgatatgtctgaagaagatatttg |
391 |
Q |
| |
|
|||| |||||| ||| |||| |||||||||||| | | ||||||| |||||| || ||||||||||| || |||| | || |||||||||| |||||| |
|
|
| T |
1600687 |
gttacaagatacaaagatcataatgtttgcttccaattttcccaa-tttgcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttg |
1600589 |
T |
|
| Q |
392 |
acaaattttaaggagatgttgtgaaattagagaattgaacttagcctagttttcaagagtgaggctacgcaaaatgaactttgaagtttctaaactggag |
491 |
Q |
| |
|
||| |||||||||||| || | |||||||| | |||||||||||| ||| ||||| | ||| ||| || |||||||||||||||| |||||||||| |
|
|
| T |
1600588 |
tcaagttttaaggagattttctaaaattagacatttgaacttagcccagtgttcaataatgaagctgcgaggaatgaactttgaagttcttaaactggag |
1600489 |
T |
|
| Q |
492 |
tcgttgaacttgtca |
506 |
Q |
| |
|
||||||||||||| |
|
|
| T |
1600488 |
gtgttgaacttgtca |
1600474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 375 - 636
Target Start/End: Original strand, 55908641 - 55908904
Alignment:
| Q |
375 |
tctgaagaagatatttgacaaattttaaggagatgttgtgaaattagagaattgaacttagcctagttttcaagagtgaggctacgcaaaatgaactttg |
474 |
Q |
| |
|
|||||||||| |||||| || || |||||||||||||| | ||||| | ||||| |||||||| | ||||||||||| |||| | ||| |||||| |
|
|
| T |
55908641 |
tctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaatttagcctactgttcaagagtgaaactacttagaataaacttta |
55908740 |
T |
|
| Q |
475 |
aagtttctaaactggagtcgttgaacttgtcacataaaagta--gatgataaagcactctttgcgatctcaaagagttgctctgggcttttacaactgtc |
572 |
Q |
| |
|
||||| || || | ||| ||| ||||||||||||| | || |||||| || |||||| | ||||||||||| ||| | ||||||||||||||||| |
|
|
| T |
55908741 |
aagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatgatgaaacactctatatgatctcaaagaattgttgtgggcttttacaactgtt |
55908840 |
T |
|
| Q |
573 |
attggaaaattgttgtaatgtcacagagaagggagtgaagcatgtggtagaaaactgcacacaa |
636 |
Q |
| |
|
||||||||||| | | ||||||||||| || ||||| ||||| || ||||||||||||||| |
|
|
| T |
55908841 |
tctggaaaattgtgatgaagtcacagagaatggtgtgaaacatgtagtcgaaaactgcacacaa |
55908904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 375 - 515
Target Start/End: Complemental strand, 659895 - 659755
Alignment:
| Q |
375 |
tctgaagaagatatttgacaaattttaaggagatgttgtgaaattagagaattgaacttagcctagttttcaagagtgaggctacgcaaaatgaactttg |
474 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||| | |||||| | || |||||||||| | |||||||| || |||||| ||| || |||| |
|
|
| T |
659895 |
tctgaagaagatattggtcaaattttaaggagatgttgtaacattagatatttaaacttagcctgctgttcaagagggaagctacgagtaataaattttg |
659796 |
T |
|
| Q |
475 |
aagtttctaaactggagtcgttgaacttgtcacataaaagt |
515 |
Q |
| |
|
||||| | ||||| ||| ||||||||||||||||| |||| |
|
|
| T |
659795 |
aagttcccaaactagaggtgttgaacttgtcacatacaagt |
659755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 590 - 735
Target Start/End: Complemental strand, 6006296 - 6006151
Alignment:
| Q |
590 |
atgtcacagagaagggagtgaagcatgtggtagaaaactgcacacaattgagagtcatcaatttgacgaactgtcataaagtgcacgctgatgttgttgc |
689 |
Q |
| |
|
|||||||| |||||||||||| ||| || ||||||||||||| ||||||||||| || |||||| | | |||||||||||| ||||||||||||| |
|
|
| T |
6006296 |
atgtcacaaagaagggagtgatgcaagtcgtagaaaactgcaaacaattgagagagataaatttgcaggattgtcataaagtggtagctgatgttgttga |
6006197 |
T |
|
| Q |
690 |
accgatgctgctttcaaggccatcgttgagaaagataattgctcca |
735 |
Q |
| |
|
|||| | || |||||||||| ||||||||||||| ||||||| |
|
|
| T |
6006196 |
cttgatggtatttacaaggccatcattgagaaagataactgctcca |
6006151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 464 - 636
Target Start/End: Original strand, 12121459 - 12121633
Alignment:
| Q |
464 |
aatgaactttgaagtttctaaactggagtcgttgaacttgtcacataaaa--gtagatgataaagcactctttgcgatctcaaagagttgctctgggctt |
561 |
Q |
| |
|
|||||||||||||||| | ||||| || ||||||||||||| ||| || || |||||| || |||||| | ||||||||| ||||| ||||||| |
|
|
| T |
12121459 |
aatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggctt |
12121558 |
T |
|
| Q |
562 |
ttacaactgtcattggaaaattgttgtaatgtcacagagaagggagtgaagcatgtggtagaaaactgcacacaa |
636 |
Q |
| |
|
|| ||||| ||| ||||| || | | ||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
12121559 |
ttgcaactctcactggaatggtgcttttttgtcacagagatgggagtgaagcatgtggtagaaaaatgcacacaa |
12121633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 386 - 636
Target Start/End: Original strand, 53761696 - 53761945
Alignment:
| Q |
386 |
tatttgacaaattttaaggagatgttgtgaaattagagaattgaacttagcctagttttcaagagtgaggctacgcaaaatgaactttgaagtttctaaa |
485 |
Q |
| |
|
|||||| ||| ||||||||||||||||| | ||||| | |||||||||||| ||| ||||||||||| |||| ||||||||||| |||| | || |
|
|
| T |
53761696 |
tatttgtcaagttttaaggagatgttgtaacattaggcatttgaacttagccgagtgttcaagagtgaagctaattggaatgaactttgtagttcccaag |
53761795 |
T |
|
| Q |
486 |
ctggagtcgttgaacttgtcacata--aaagtagatgataaagcactctttgcgatctcaaagagttgctctgggcttttacaactgtcattggaaaatt |
583 |
Q |
| |
|
|| ||| |||||||||||||| || ||||| | |||||| ||||| || |||||| |||| ||| ||||||||| ||| | | | || || ||| |
|
|
| T |
53761796 |
ctagaggcgttgaacttgtcatttacgaaagttaacgataaaacactc--tgtgatctcgaagaattgtcgtgggcttttgcaa-tattactgaaacatt |
53761892 |
T |
|
| Q |
584 |
gttgtaatgtcacagagaagggagtgaagcatgtggtagaaaactgcacacaa |
636 |
Q |
| |
|
|| ||||||||| || ||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
53761893 |
gtgataatgtcacggacaagggagtgaaacatgtggaagaaaactgcacacaa |
53761945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 538 - 655
Target Start/End: Original strand, 1489439 - 1489556
Alignment:
| Q |
538 |
atctcaaagagttgctctgggcttttacaactgtcattggaaaattgttgtaatgtcacagagaagggagtgaagcatgtggtagaaaactgcacacaat |
637 |
Q |
| |
|
||||||| | ||||| ||||||||| ||||| | | ||||| |||| ||||||||||||||||||||||||||||||| ||||||| ||| ||||| |
|
|
| T |
1489439 |
atctcaatgtgttgccgtgggcttttgcaactcttactggaagggtgttttaatgtcacagagaagggagtgaagcatgtgctagaaaaatgcgcacaac |
1489538 |
T |
|
| Q |
638 |
tgagagtcatcaatttga |
655 |
Q |
| |
|
| |||| |||||||||| |
|
|
| T |
1489539 |
taagagagatcaatttga |
1489556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 461 - 735
Target Start/End: Complemental strand, 7307960 - 7307684
Alignment:
| Q |
461 |
caaaatgaactttgaagtttctaaactggagtcgttgaacttgtcacataaa--agtagatgataaagcactctttgcgatctcaaagagttgctctggg |
558 |
Q |
| |
|
||||||||||||| ||||| | ||| ||||| |||||||||||| ||| | ||| |||||| ||||||| | ||||||||||||||| | | || |
|
|
| T |
7307960 |
caaaatgaactttaaagttcccaaattggaggtattgaacttgtcatatacagaagttgatgatgaagcactacgtatgatctcaaagagttgttgtagg |
7307861 |
T |
|
| Q |
559 |
cttttacaactgtcattggaaaattgttgtaatgtcacagagaagggagtgaagcatgtggtagaaaactgcacacaattgagagtcatcaatttgacga |
658 |
Q |
| |
|
||||| || |||| | ||||| ||||| || |||||| || ||| ||||||||||||||||||||||||| ||| |||| | |||||||||| || |
|
|
| T |
7307860 |
cttttgcacctgttactggaaggttgttttattgtcacgatgactggattgaagcatgtggtagaaaactgcacgcaactgagggaaatcaatttgagga |
7307761 |
T |
|
| Q |
659 |
actgtcataaagtgcacgctgatgttgttgcaccgatgctgctttcaaggccatcgttgagaaagataattgctcca |
735 |
Q |
| |
|
| || | | | ||||||||||| | |||||| || | |||||||||||| ||||||||||||||||||||| |
|
|
| T |
7307760 |
agtgccttgacgtgcacgctgacgctgttgccttaattgtatcttcaaggccatcattgagaaagataattgctcca |
7307684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 584 - 655
Target Start/End: Original strand, 1513528 - 1513599
Alignment:
| Q |
584 |
gttgtaatgtcacagagaagggagtgaagcatgtggtagaaaactgcacacaattgagagtcatcaatttga |
655 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| |||| ||||||| ||||||||| |||||| |||||||||| |
|
|
| T |
1513528 |
gttgtattgtcacagagatgggagtgaagcttgtgctagaaaaatgcacacaactgagagagatcaatttga |
1513599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 595 - 655
Target Start/End: Complemental strand, 558462 - 558402
Alignment:
| Q |
595 |
acagagaagggagtgaagcatgtggtagaaaactgcacacaattgagagtcatcaatttga |
655 |
Q |
| |
|
||||| || ||||||||||||||| ||||||||||||||||| |||||| |||||||||| |
|
|
| T |
558462 |
acagataaaggagtgaagcatgtgctagaaaactgcacacaaatgagagaaatcaatttga |
558402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 464 - 643
Target Start/End: Original strand, 1524488 - 1524666
Alignment:
| Q |
464 |
aatgaactttgaagtttctaaactggagtcgttgaacttgtcacataaaagta--gatgataaagcactctttgcgatctcaaagagttgctctgggctt |
561 |
Q |
| |
|
|||||||||||||||| | || ||||| |||||| ||||||| || |||| |||||| || |||||| | ||||||| ||||||| ||||||| |
|
|
| T |
1524488 |
aatgaactttgaagttcccaatttggaggtgttgaatttgtcacgtacaagtgttgatgatgaaacactctatatgatctcacagagttgtcgtgggctt |
1524587 |
T |
|
| Q |
562 |
ttacaactgtcattggaaaattgttgtaatgtcacagagaagggagtgaagcatgtggtagaaaactgcacacaattgagag |
643 |
Q |
| |
|
|| ||||||| |||| | ||||| |||||||||||| ||||||||| ||||| ||||||||||||||||| |||||| |
|
|
| T |
1524588 |
ttgcaactgttattgcgtagttgtt---atgtcacagagaggggagtgaattatgtgatagaaaactgcacacaactgagag |
1524666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 466 - 563
Target Start/End: Original strand, 1548428 - 1548527
Alignment:
| Q |
466 |
tgaactttgaagtttctaaactggagtcgttgaacttgtcacataaaagta--gatgataaagcactctttgcgatctcaaagagttgctctgggctttt |
563 |
Q |
| |
|
||||||||||| || | ||||||||| ||||||||||||||||| ||||| |||||| || ||||| || ||||||||||||||| | ||||||||| |
|
|
| T |
1548428 |
tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggctttt |
1548527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 607 - 674
Target Start/End: Complemental strand, 570303 - 570236
Alignment:
| Q |
607 |
gtgaagcatgtggtagaaaactgcacacaattgagagtcatcaatttgacgaactgtcataaagtgca |
674 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||| | |||||||||| |||||| |||||||||| |
|
|
| T |
570303 |
gtgaatcatgtggtagaaaactgcacacaactgagggagatcaatttgaagaactgctataaagtgca |
570236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 590 - 636
Target Start/End: Original strand, 55505235 - 55505281
Alignment:
| Q |
590 |
atgtcacagagaagggagtgaagcatgtggtagaaaactgcacacaa |
636 |
Q |
| |
|
|||||||||||||||||||||| || ||| ||||||||||||||||| |
|
|
| T |
55505235 |
atgtcacagagaagggagtgaaacacgtgttagaaaactgcacacaa |
55505281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 592 - 689
Target Start/End: Complemental strand, 1545740 - 1545643
Alignment:
| Q |
592 |
gtcacagagaagggagtgaagcatgtggtagaaaactgcacacaattgagagtcatcaatttgacgaactgtcataaagtgcacgctgatgttgttgc |
689 |
Q |
| |
|
|||||| ||||||||||||| ||| |||| |||||||||||||| | ||||| |||||||||| | ||| |||||||||| ||| ||||| |||| |
|
|
| T |
1545740 |
gtcacatagaagggagtgaaagatgcggtaaaaaactgcacacaactaagagtgatcaatttgaggggttgtgataaagtgcatgctaatgttattgc |
1545643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 537 - 634
Target Start/End: Complemental strand, 1754541 - 1754444
Alignment:
| Q |
537 |
gatctcaaagagttgctctgggcttttacaactgtcattggaaaattgttgtaatgtcacagagaagggagtgaagcatgtggtagaaaactgcacac |
634 |
Q |
| |
|
||||||||||||||||||||| || | ||| || || ||||| |||| |||| |||||||||| ||||||||||| || |||||||| ||||||| |
|
|
| T |
1754541 |
gatctcaaagagttgctctggactactgcaattggatttagaaaaatgttataatatcacagagaaaggagtgaagcaagtagtagaaaaatgcacac |
1754444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 494 - 631
Target Start/End: Complemental strand, 640982 - 640843
Alignment:
| Q |
494 |
gttgaacttgtcacataaaa--gtagatgataaagcactctttgcgatctcaaagagttgctctgggcttttacaactgtcattggaaaattgttgtaat |
591 |
Q |
| |
|
||||||||||||| ||| || || |||||| || |||||| | || |||||||| |||| ||| ||||| || |||| | ||||| ||||| | || |
|
|
| T |
640982 |
gttgaacttgtcagatacaaacgttgatgatgaaacactctacgtgacctcaaagaattgccgtggtcttttgcatctgttactggaagattgtcattat |
640883 |
T |
|
| Q |
592 |
gtcacagagaagggagtgaagcatgtggtagaaaactgca |
631 |
Q |
| |
|
|| ||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
640882 |
gtaacaaagaagggagtgaatcatgtggtagaaaactgca |
640843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 590 - 629
Target Start/End: Original strand, 1534121 - 1534160
Alignment:
| Q |
590 |
atgtcacagagaagggagtgaagcatgtggtagaaaactg |
629 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
1534121 |
atgtcacagagaagggagttaagcatgtggtagagaactg |
1534160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 589 - 643
Target Start/End: Complemental strand, 566159 - 566105
Alignment:
| Q |
589 |
aatgtcacagagaagggagtgaagcatgtggtagaaaactgcacacaattgagag |
643 |
Q |
| |
|
||||| ||||||||||||||||| || |||| ||||||||||||||| |||||| |
|
|
| T |
566159 |
aatgttacagagaagggagtgaaacacctggtggaaaactgcacacaactgagag |
566105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 575 - 629
Target Start/End: Original strand, 1517611 - 1517665
Alignment:
| Q |
575 |
tggaaaattgttgtaatgtcacagagaagggagtgaagcatgtggtagaaaactg |
629 |
Q |
| |
|
||||||||||| | ||||||||||||||||||| | |||||||||||| ||||| |
|
|
| T |
1517611 |
tggaaaattgtcatgatgtcacagagaagggagttaggcatgtggtagagaactg |
1517665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 464 - 655
Target Start/End: Original strand, 1537769 - 1537962
Alignment:
| Q |
464 |
aatgaactttgaagtttctaaactggagtcgttgaacttgtcacataaaa--gtagatgataaagcactctttgcgatctcaaagagttgctctgggctt |
561 |
Q |
| |
|
|||||||||||||||| | ||||| || ||||||||||||| ||| || || |||| ||| |||| | || ||||||||| |||| ||||||| |
|
|
| T |
1537769 |
aatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcgtgggctt |
1537868 |
T |
|
| Q |
562 |
ttacaactgtcattggaaaattgttgtaatgtcacagagaagggagtgaagcatgtggtagaaaactgcacacaattgagagtcatcaatttga |
655 |
Q |
| |
|
|| ||||| | | ||||| ||||| | ||||||| |||||||||||||| ||||| ||||||| ||||| ||| | |||| |||||||||| |
|
|
| T |
1537869 |
ttgcaacttttactggaactttgttatcttgtcacacagaagggagtgaagtatgtgctagaaaaatgcactcaactaagagagatcaatttga |
1537962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 270
Target Start/End: Complemental strand, 547261 - 547204
Alignment:
| Q |
213 |
agtgtagagaattataattctttaatggatattgttataagccctcaaataaagtctc |
270 |
Q |
| |
|
||||||||||||| ||||||||| | |||| ||||| ||||||||||| | ||||||| |
|
|
| T |
547261 |
agtgtagagaattctaattctttcaaggattttgttgtaagccctcaattgaagtctc |
547204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 305; Significance: 1e-171; HSPs: 6)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 186 - 510
Target Start/End: Complemental strand, 816 - 492
Alignment:
| Q |
186 |
aacaagcgttgggtaagtcggataagaagtgtagagaattataattctttaatggatattgttataagccctcaaataaagtctcgtagtttgcaaggca |
285 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
816 |
aacaagtgttgggtaagccggataagaagtgtagagaattataattctttaatggatattgttataagccctcaaataaagtctcttagtttgcaagaca |
717 |
T |
|
| Q |
286 |
gtggtgcgttaaaagataaaaacatcaaaatgtttgcttcagtattcccaaatttgcagctacttgatttgagtcatttcattgatatgtctgaagaaga |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
716 |
gtggtgcgttaaaagataaaaacatcaaaatgtttgcttcagtattcccaaatttgcagctacttgatttgagtcatttcattgatatgtctgaagaaga |
617 |
T |
|
| Q |
386 |
tatttgacaaattttaaggagatgttgtgaaattagagaattgaacttagcctagttttcaagagtgaggctacgcaaaatgaactttgaagtttctaaa |
485 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
616 |
tatttgacaaattttaagtagatgttgtgaaattagagaattgaacttagcctagttttcaagagtgaggctacgcaaaatgaactttgaagtttctaaa |
517 |
T |
|
| Q |
486 |
ctggagtcgttgaacttgtcacata |
510 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
516 |
ctggagtcgttgaacttgtcacata |
492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 320
Target Start/End: Complemental strand, 2376 - 2073
Alignment:
| Q |
17 |
catcattgttaaatgtattcatttaacagaagcaggcgttgcttctgctctacttgagaaatcaacattttggtttttatcctttacactctatgaacga |
116 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2376 |
catccttgttaaatgtattcatttaacagaagcaggcgttgcttctgctctacttgaaaaatcaacattttggtttttatcctttacactctatgaacga |
2277 |
T |
|
| Q |
117 |
caacaagactatgcgatgttgtttgcatgcattaggaactgcccttcacttagagagatcatattcgacaacaagcgttgggtaagtcggataagaagtg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2276 |
caacaagactatgcgatgttgtttgcatgcattaggaactgcccttcacttagagagatcatattcgactacaagcgttgggtaagtcggataagaagtg |
2177 |
T |
|
| Q |
217 |
tagagaattataattctttaatggatattgttataagccctcaaataaagtctcgtagtttgcaaggcagtggtgcgttaaaagataaaaacatcaaaat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2176 |
tagagaattataattctttaatggatattgttataagccctcaaataaagtctcttagtttgcaaggcagtggtgcgttaaaagataaaaacatcaaaat |
2077 |
T |
|
| Q |
317 |
gttt |
320 |
Q |
| |
|
|||| |
|
|
| T |
2076 |
gttt |
2073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #3
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 320
Target Start/End: Complemental strand, 7162 - 6859
Alignment:
| Q |
17 |
catcattgttaaatgtattcatttaacagaagcaggcgttgcttctgctctacttgagaaatcaacattttggtttttatcctttacactctatgaacga |
116 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7162 |
catccttgttaaatgtattcatttaacagaagcaggcgttgcttctgctctacttgaaaaatcaacattttggtttttatcctttacactctatgaacga |
7063 |
T |
|
| Q |
117 |
caacaagactatgcgatgttgtttgcatgcattaggaactgcccttcacttagagagatcatattcgacaacaagcgttgggtaagtcggataagaagtg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7062 |
caacaagactatgcgatgttgtttgcatgcattaggaactgcccttcacttagagagatcatattcgactacaagcgttgggtaagtcggataagaagtg |
6963 |
T |
|
| Q |
217 |
tagagaattataattctttaatggatattgttataagccctcaaataaagtctcgtagtttgcaaggcagtggtgcgttaaaagataaaaacatcaaaat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6962 |
tagagaattataattctttaatggatattgttataagccctcaaataaagtctcttagtttgcaaggcagtggtgcgttaaaagataaaaacatcaaaat |
6863 |
T |
|
| Q |
317 |
gttt |
320 |
Q |
| |
|
|||| |
|
|
| T |
6862 |
gttt |
6859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #4
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 320
Target Start/End: Complemental strand, 14527 - 14224
Alignment:
| Q |
17 |
catcattgttaaatgtattcatttaacagaagcaggcgttgcttctgctctacttgagaaatcaacattttggtttttatcctttacactctatgaacga |
116 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14527 |
catccttgttaaatgtattcatttaacagaagcaggcgttgcttctgctctacttgaaaaatcaacattttggtttttatcctttacactctatgaacga |
14428 |
T |
|
| Q |
117 |
caacaagactatgcgatgttgtttgcatgcattaggaactgcccttcacttagagagatcatattcgacaacaagcgttgggtaagtcggataagaagtg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
14427 |
caacaagactatgcgatgttgtttgcatgcattaggaactgcccttcacttagagagatcatattcgactacaagcgttgggtaagtcggataagaagtg |
14328 |
T |
|
| Q |
217 |
tagagaattataattctttaatggatattgttataagccctcaaataaagtctcgtagtttgcaaggcagtggtgcgttaaaagataaaaacatcaaaat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14327 |
tagagaattataattctttaatggatattgttataagccctcaaataaagtctcttagtttgcaaggcagtggtgcgttaaaagataaaaacatcaaaat |
14228 |
T |
|
| Q |
317 |
gttt |
320 |
Q |
| |
|
|||| |
|
|
| T |
14227 |
gttt |
14224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #5
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 320
Target Start/End: Original strand, 50315 - 50618
Alignment:
| Q |
17 |
catcattgttaaatgtattcatttaacagaagcaggcgttgcttctgctctacttgagaaatcaacattttggtttttatcctttacactctatgaacga |
116 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50315 |
catccttgttaaatgtattcatttaacagaagcaggcgttgcttctgctctacttgaaaaatcaacattttggtttttatcctttacactctatgaacga |
50414 |
T |
|
| Q |
117 |
caacaagactatgcgatgttgtttgcatgcattaggaactgcccttcacttagagagatcatattcgacaacaagcgttgggtaagtcggataagaagtg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
50415 |
caacaagactatgcgatgttgtttgcatgcattaggaactgcccttcacttagagagatcatattcgactacaagcgttgggtaagtcggataagaagtg |
50514 |
T |
|
| Q |
217 |
tagagaattataattctttaatggatattgttataagccctcaaataaagtctcgtagtttgcaaggcagtggtgcgttaaaagataaaaacatcaaaat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50515 |
tagagaattataattctttaatggatattgttataagccctcaaataaagtctcttagtttgcaaggcagtggtgcgttaaaagataaaaacatcaaaat |
50614 |
T |
|
| Q |
317 |
gttt |
320 |
Q |
| |
|
|||| |
|
|
| T |
50615 |
gttt |
50618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #6
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 320
Target Start/End: Original strand, 31917 - 32220
Alignment:
| Q |
17 |
catcattgttaaatgtattcatttaacagaagcaggcgttgcttctgctctacttgagaaatcaacattttggtttttatcctttacactctatgaacga |
116 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31917 |
catccttgttaaatgtattcatttaacagaagcaggcgttgcttctgctctacttgaaaaatcaacattttggtttttatcctttacactctatgaacga |
32016 |
T |
|
| Q |
117 |
caacaagactatgcgatgttgtttgcatgcattaggaactgcccttcacttagagagatcatattcgacaacaagcgttgggtaagtcggataagaagtg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32017 |
caacaagactatgcgatgttgtttgcatgcattagaaactgtccttcacttagagagatcatattcgactacaagcgttgggtaagtcggataagaagtg |
32116 |
T |
|
| Q |
217 |
tagagaattataattctttaatggatattgttataagccctcaaataaagtctcgtagtttgcaaggcagtggtgcgttaaaagataaaaacatcaaaat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32117 |
tagagaattataattctttaatggatattgttataagccctcaaataaagtctcttagtttgcaaggcagtggtgcattaaaagataaaaacatcaaaat |
32216 |
T |
|
| Q |
317 |
gttt |
320 |
Q |
| |
|
|||| |
|
|
| T |
32217 |
gttt |
32220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 320
Target Start/End: Complemental strand, 7062 - 6759
Alignment:
| Q |
17 |
catcattgttaaatgtattcatttaacagaagcaggcgttgcttctgctctacttgagaaatcaacattttggtttttatcctttacactctatgaacga |
116 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7062 |
catccttgttaaatgtattcatttaacagaagcaggcgttgcttctgctctacttgaaaaatcaacattttggtttttatcctttacactctatgaacga |
6963 |
T |
|
| Q |
117 |
caacaagactatgcgatgttgtttgcatgcattaggaactgcccttcacttagagagatcatattcgacaacaagcgttgggtaagtcggataagaagtg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6962 |
caacaagactatgcgatgttgtttgcatgcattagaaactgtccttcacttagagagatcatattcgactacaagcgttgggtaagtcggataagaagtg |
6863 |
T |
|
| Q |
217 |
tagagaattataattctttaatggatattgttataagccctcaaataaagtctcgtagtttgcaaggcagtggtgcgttaaaagataaaaacatcaaaat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6862 |
tagagaattataattctttaatggatattgttataagccctcaaataaagtctcttagtttgcaaggcagtggtgcattaaaagataaaaacatcaaaat |
6763 |
T |
|
| Q |
317 |
gttt |
320 |
Q |
| |
|
|||| |
|
|
| T |
6762 |
gttt |
6759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 1e-37; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 397 - 730
Target Start/End: Original strand, 34936098 - 34936433
Alignment:
| Q |
397 |
ttttaaggagatgttgtgaaattagagaattgaacttagcctagttttcaagagtgaggctacgcaaaatgaactttgaagtttctaaactggagtcgtt |
496 |
Q |
| |
|
||||||||||||||||||| |||||| | ||| |||| ||| | | ||||| ||||| || | || ||||| |||||| ||| | ||||| ||| ||| |
|
|
| T |
34936098 |
ttttaaggagatgttgtgacattagacatttgtacttggccgattgttcaaaagtgaaccttcacagaatgatctttgatgttccaaaactagaggtgtt |
34936197 |
T |
|
| Q |
497 |
gaacttgtcacataaaag--tagatgataaagcactctttgcgatctcaaagagttgctctgggcttttacaactgtcattggaaaattgttgtaatgtc |
594 |
Q |
| |
|
| |||||||| ||| ||| | ||||||||| |||||| ||| ||| |||||||||| ||||||||| ||||| | | | ||||||||||| ||||| |
|
|
| T |
34936198 |
ggacttgtcatatacaagagttgatgataaaacactctatgccatcgcaaagagttgtcgtgggcttttgcaactattacttcaaaattgttgtgatgtc |
34936297 |
T |
|
| Q |
595 |
acagagaagggagtgaagcatgtggtagaaaactgcacacaattgagagtcatcaatttgacgaactgtcataaagtgcacgctgatgttgttgcaccga |
694 |
Q |
| |
|
|| ||||||||||| ||| |||||| ||||| |||||||||||||| | |||||||||| |||||| ||||||||| | ||| |||||||| | ||| |
|
|
| T |
34936298 |
acggagaagggagttgagcgtgtggttgaaaattgcacacaattgagggagatcaatttgaggaactgccataaagtggatgctaatgttgttacctcga |
34936397 |
T |
|
| Q |
695 |
tgctgctttcaaggccatcgttgagaaagataattg |
730 |
Q |
| |
|
|| | ||||||||||| ||||||||||||||||| |
|
|
| T |
34936398 |
tgataacttcaaggccattgttgagaaagataattg |
34936433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 376 - 636
Target Start/End: Original strand, 18315187 - 18315449
Alignment:
| Q |
376 |
ctgaagaagatatttgacaaattttaaggagatgttgtgaaattagagaattgaacttagcctagtt-ttcaagagtgaggctacgcaaaatgaactttg |
474 |
Q |
| |
|
||||||||| |||||| ||| ||||| | || |||| ||| |||||| | ||||||||||| | || ||||||| ||| |||||| |||||||||| |
|
|
| T |
18315187 |
ctgaagaaggtatttgtcaagttttacgaagttgttctgagattagacagttgaacttagc-tcgtgattcaagaatgaagctacgtggaatgaacttta |
18315285 |
T |
|
| Q |
475 |
aagtttctaaactggagtcgttgaacttgtcacata--aaagtagatgataaagcactctttgcgatctcaaagagttgctctgggcttttacaactgtc |
572 |
Q |
| |
|
||||| | ||||||||| ||||||||||||||||| ||||| |||||| ||||||||| || ||||||||||||||| | ||||||| ||||||| |
|
|
| T |
18315286 |
aagttcccaaactggaggtgttgaacttgtcacatacaaaagttgatgatgaagcactctatgtgatctcaaagagttgtcgtaggcttttgcaactgtt |
18315385 |
T |
|
| Q |
573 |
attggaaaattgttgtaatgtcacagagaagggagtgaagcatgtggtagaaaactgcacacaa |
636 |
Q |
| |
|
||||||| |||||| ||||||||||||| |||| ||| ||||||||||||||||||||||| |
|
|
| T |
18315386 |
attggaacgctgttgtgatgtcacagagaaaggagaaaagtatgtggtagaaaactgcacacaa |
18315449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 463 - 642
Target Start/End: Complemental strand, 27922606 - 27922425
Alignment:
| Q |
463 |
aaatgaactttgaagtttctaaactggagtcgttgaacttgtcacataaaa--gtagatgataaagcactctttgcgatctcaaagagttgctctgggct |
560 |
Q |
| |
|
||||||||||||||||| | ||| ||||| ||||||||||||| ||| || || |||||| ||||||| | | ||||||||||||||| | |||||| |
|
|
| T |
27922606 |
aaatgaactttgaagttcccaaattggaggtgttgaacttgtcatatacaaatgttgatgatgaagcactttatatgatctcaaagagttgttgtgggct |
27922507 |
T |
|
| Q |
561 |
tttacaactgtcattggaaaattgttgtaatgtcacagagaagggagtgaagcatgtggtagaaaactgcacacaattgaga |
642 |
Q |
| |
|
||| || ||||| | ||||||||| | || ||||| ||||||||||||| |||||||||||||||||||| ||| ||||| |
|
|
| T |
27922506 |
tttgaaattgtcacttgaaaattgtaatgatttcacaaagaagggagtgaaccatgtggtagaaaactgcactcaactgaga |
27922425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 464 - 641
Target Start/End: Original strand, 17636403 - 17636581
Alignment:
| Q |
464 |
aatgaactttgaagtttctaaactggagtcgttgaacttgtcacataaa--agtagatgataaagcactctttgcgatctcaaagagttgctctgggctt |
561 |
Q |
| |
|
|||||||||||||||| | ||| ||||| ||||||||||||||| | | ||| || ||| ||||| | | || ||||||||||||||| | | ||| |
|
|
| T |
17636403 |
aatgaactttgaagttcccaaattggaggtgttgaacttgtcacaaacaggagttgacgatgaagcattgtatgtgatctcaaagagttgtcttagactt |
17636502 |
T |
|
| Q |
562 |
ttacaactgtcattggaaaattgttgtaatgtcacagagaagggagtgaagcatgtggtagaaaactgcacacaattgag |
641 |
Q |
| |
|
|| ||| ||||| | ||| ||||| ||||||||| ||||| ||||||| ||||||| ||||||| |||||||||||||| |
|
|
| T |
17636503 |
ttgcaattgtcacttgaatattgtgttaatgtcac-gagaaaggagtgaggcatgtgctagaaaattgcacacaattgag |
17636581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 466 - 635
Target Start/End: Original strand, 17628018 - 17628189
Alignment:
| Q |
466 |
tgaactttgaagtttctaaactggagtcgttgaacttgtcacata--aaagtagatgataaagcactctttgcgatctcaaagagttgctctgggctttt |
563 |
Q |
| |
|
|||||||| || |||||||| ||||| ||||||||||||||||| | ||| ||||||||||||||| || ||||||||||| ||| | |||||| || |
|
|
| T |
17628018 |
tgaactttaaactttctaaattggaggtgttgaacttgtcacatactagagttgatgataaagcactccgtgtgatctcaaagaattgttttgggctctt |
17628117 |
T |
|
| Q |
564 |
acaactgtcattggaaaattgttgtaatgtcacagagaagggagtgaagcatgtggtagaaaactgcacaca |
635 |
Q |
| |
|
|||| | | | ||| |||| ||||||||| |||||||||||||||||| | ||||||||||||| |
|
|
| T |
17628118 |
gaaactattactagaattttgtaaaggtgtcacagacaagggagtgaagcatgtgttgaaaaactgcacaca |
17628189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 521 - 636
Target Start/End: Complemental strand, 44736573 - 44736458
Alignment:
| Q |
521 |
ataaagcactctttgcgatctcaaagagttgctctgggcttttacaactgtcattggaaaattgttgtaatgtcacagagaagggagtgaagcatgtggt |
620 |
Q |
| |
|
||||| ||||| ||| ||||||||||||||| | ||||||||| ||||| |||| |||||| |||||||||| |||||||||||| ||||| || |
|
|
| T |
44736573 |
ataaaacactcattgtgatctcaaagagttgttgtgggcttttgtaactggtattgagctattgttataatgtcacaacgaagggagtgaaacatgttgt |
44736474 |
T |
|
| Q |
621 |
agaaaactgcacacaa |
636 |
Q |
| |
|
|||||| || |||||| |
|
|
| T |
44736473 |
agaaaattgtacacaa |
44736458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 607 - 672
Target Start/End: Complemental strand, 21235510 - 21235445
Alignment:
| Q |
607 |
gtgaagcatgtggtagaaaactgcacacaattgagagtcatcaatttgacgaactgtcataaagtg |
672 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||| | |||||||||| |||||| |||||||| |
|
|
| T |
21235510 |
gtgaatcatgtggtagaaaactgcacacaactgagggagatcaatttgaagaactgctataaagtg |
21235445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 6e-30; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 381 - 633
Target Start/End: Original strand, 51113700 - 51113954
Alignment:
| Q |
381 |
gaagatatttgacaaattttaaggagatgttgtgaaattagagaattgaacttagcctagttttcaagagtgaggctacgcaaaatgaactttgaagttt |
480 |
Q |
| |
|
|||| |||||| ||| |||||| |||||||||| ||||||| | ||||| ||||| || | ||||| | ||| ||||| |||||||||||||| | |
|
|
| T |
51113700 |
gaaggtatttgtcaagttttaaagagatgttgtaaaattaggcatttgaaattagcttactgttcaaaactgaagctacttggaatgaactttgaagctc |
51113799 |
T |
|
| Q |
481 |
ctaaactggagtcgttgaacttgtcacataaaa--gtagatgataaagcactctttgcgatctcaaagagttgctctgggcttttacaactgtcattgga |
578 |
Q |
| |
|
| ||||||||| ||| |||||||| ||| || || |||||| || |||||| || |||||| |||||||| | ||||||||| ||||||| | || | |
|
|
| T |
51113800 |
ccaaactggaggtgttagacttgtcaaatacaatggttgatgatgaaacactctatgtgatctcgaagagttgttgtgggcttttgcaactgttactgaa |
51113899 |
T |
|
| Q |
579 |
aaattgttgtaatgtcacagagaagggagtgaagcatgtggtagaaaactgcaca |
633 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
51113900 |
aaattgttaccatgtcacagagaagggagtgaagcatgtggtagaaaaatgcaca |
51113954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 510 - 643
Target Start/End: Original strand, 51764490 - 51764623
Alignment:
| Q |
510 |
aaaagtagatgataaagcactctttgcgatctcaaagagttgctctgggcttttacaactgtcattggaaaattgttgtaatgtcacagagaagggagtg |
609 |
Q |
| |
|
|||||| ||||||||| |||||| |||||||||||||| ||| | |||||||| ||||| | | ||||| ||||| |||||||| |||||||||||| |
|
|
| T |
51764490 |
aaaagttgatgataaaacactctatgcgatctcaaagaattgttgcgggcttttgcaactattactggaacattgtgataatgtcaaggagaagggagtg |
51764589 |
T |
|
| Q |
610 |
aagcatgtggtagaaaactgcacacaattgagag |
643 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||| |
|
|
| T |
51764590 |
aaacatgtggttgaaaactgcacacaattgagag |
51764623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 464 - 726
Target Start/End: Original strand, 51120895 - 51121159
Alignment:
| Q |
464 |
aatgaactttgaagtttctaaactggagtcgttgaacttgtcacataaaag--tagatgataaagcactctttgcgatctcaaagagttgctctgggctt |
561 |
Q |
| |
|
|||||||||||||||| ||| ||||| |||||||||||| |||| ||| | |||||| || ||| | || |||||||||||||| ||||||| |
|
|
| T |
51120895 |
aatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggctt |
51120994 |
T |
|
| Q |
562 |
ttacaactgtcattggaaaattgttgtaatgtcacagagaagggagtgaagcatgtggtagaaaactgcacacaattgagagtcatcaatttgacgaact |
661 |
Q |
| |
|
|| ||| |||| | |||| |||| |||||||| | || |||||||| |||||||||||||||||||||||||||||||| ||||| |||| | | | |
|
|
| T |
51120995 |
ttgcaattgtctctagaaagctgtttgtatgtcacacaaaaaggagtgaaacatgtggtagaaaactgcacacaattgagagtgatcaacttgaggtatt |
51121094 |
T |
|
| Q |
662 |
gtcataaagtgcacgctgatgttgttgcaccgatgctgctttcaaggccatcgttgagaaagata |
726 |
Q |
| |
|
| ||||||| || |||||| ||||||| | || | |||||||| ||||||||||||||||| |
|
|
| T |
51121095 |
gctataaagtccatgctgattttgttgcctcaatagtcttttcaaggtcatcgttgagaaagata |
51121159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 537 - 736
Target Start/End: Original strand, 514805 - 515004
Alignment:
| Q |
537 |
gatctcaaagagttgctctgggcttttacaactgtcattggaaaattgttgtaatgtcacagagaagggagtgaagcatgtggtagaaaactgcacacaa |
636 |
Q |
| |
|
|||||| |||||||||| ||||||||| ||||| | | || |||||||| | ||||||||| |||||||||||||||||| |||||||||||| | |
|
|
| T |
514805 |
gatctcgaagagttgctgtgggcttttgcaactattactgcaaaattgtgaaggtatcacagagacgggagtgaagcatgtggtgaaaaactgcacacga |
514904 |
T |
|
| Q |
637 |
ttgagagtcatcaatttgacgaactgtcataaagtgcacgctgatgttgttgcaccgatgctgctttcaaggccatcgttgagaaagataattgctccaa |
736 |
Q |
| |
|
|||||| |||||||| | ||| |||||||||| | |||||||||| || ||| | ||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
514905 |
ctgagagagatcaatttaagaggttgtaataaagtgcattataatgttgttgccccaatggtattttcaaggccatcattgagaaagatagttgctccaa |
515004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 386 - 635
Target Start/End: Original strand, 13470656 - 13470907
Alignment:
| Q |
386 |
tatttgacaaattttaaggagatgttgtgaaattagagaattgaacttagcctagttttcaagagtgaggctacgcaaaatgaactttgaagtttctaaa |
485 |
Q |
| |
|
|||||| ||| ||||||||| ||||||| | ||||| | |||||||||||||| | | || ||||| ||||| ||||||||||| ||| | || |
|
|
| T |
13470656 |
tatttgtcaagttttaaggatatgttgtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctacttggaatgaactttgttgttcccaat |
13470755 |
T |
|
| Q |
486 |
ctggagtcgttgaacttgtcacataaaa--gtagatgataaagcactctttgcgatctcaaagagttgctctgggcttttacaactgtcattggaaaatt |
583 |
Q |
| |
|
|||||| ||||||||||||| ||| || || |||||||| |||||| | ||||||||||| ||| | ||||||||| ||||| | | | ||| || |
|
|
| T |
13470756 |
ctggaggtgttgaacttgtcaaatacaaaggttaatgataaaacactctatatgatctcaaagaattgttgtgggcttttgcaactattacttgaacttt |
13470855 |
T |
|
| Q |
584 |
gttgtaatgtcacagagaagggagtgaagcatgtggtagaaaactgcacaca |
635 |
Q |
| |
|
|| |||||||||||| |||||||||| ||||||||||| ||||||||||| |
|
|
| T |
13470856 |
gtcataatgtcacagaagagggagtgaaacatgtggtagagaactgcacaca |
13470907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 473 - 631
Target Start/End: Original strand, 36811038 - 36811198
Alignment:
| Q |
473 |
tgaagtttctaaactggagtcgttgaacttgtcacataaaagta--gatgataaagcactctttgcgatctcaaagagttgctctgggcttttacaactg |
570 |
Q |
| |
|
||||| ||| ||||||||| |||||||||||| ||| ||| | ||| ||| |||||| | ||| |||||||||| |||| || ||||| ||||||| |
|
|
| T |
36811038 |
tgaagcttccaaactggaggtgttgaacttgtcccattcaagaattgataatagagcactgtatgcaatctcaaagatttgccctcggcttctacaactt |
36811137 |
T |
|
| Q |
571 |
tcattggaaaattgttgtaatgtcacagagaagggagtgaagcatgtggtagaaaactgca |
631 |
Q |
| |
|
||||| |||||| | ||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
36811138 |
gacctggaacattgttattatgtcacagagaagggagtccggcaagtggtagaaaactgca |
36811198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 469 - 642
Target Start/End: Original strand, 41901542 - 41901717
Alignment:
| Q |
469 |
actttgaagtttctaaactggagtcgttgaacttgtcacata--aaagtagatgataaagcactctttgcgatctcaaagagttgctctgggcttttaca |
566 |
Q |
| |
|
||||||||||| | ||||||||| ||||||||||||| ||| ||||| |||||| ||||||| | | ||||||||||||||| | ||| ||||| | |
|
|
| T |
41901542 |
actttgaagttcccaaactggaggtgttgaacttgtcatatacaaaagttgatgatgaagcactttatatgatctcaaagagttgttgtggacttttgaa |
41901641 |
T |
|
| Q |
567 |
actgtcattggaaaattgttgtaatgtcacagagaagggagtgaagcatgtggtagaaaactgcacacaattgaga |
642 |
Q |
| |
|
| ||||| | || ||||| | |||||||| ||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
41901642 |
attgtcacttcaagattgtaatgatgtcacaaagaagggagtgaagcatgtggtagaaaactgtacgcaattgaga |
41901717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 397 - 632
Target Start/End: Complemental strand, 32267636 - 32267402
Alignment:
| Q |
397 |
ttttaaggagatgttgtgaaattagagaattgaacttagcctagttttcaagagtgaggctacgcaaaatgaactttgaagtttctaaactggagtcgtt |
496 |
Q |
| |
|
||||||||| ||||||| | |||||| | ||||||||| || ||| ||||| ||||| ||| ||||||||||||||||| | ||| ||||| || |
|
|
| T |
32267636 |
ttttaaggatatgttgtaacattagacatttgaacttatcccagtgttcaacagtgaaactag---aaatgaactttgaagttcccaaattggaggtatt |
32267540 |
T |
|
| Q |
497 |
gaacttgtcacataaaa--gtagatgataaagcactctttgcgatctcaaagagttgctctgggcttttacaactgtcattggaaaattgttgtaatgtc |
594 |
Q |
| |
|
|||||||||||| | || || |||||| ||||||| | | ||||||||||||||| | ||||||||| || ||||| | |||||||| | || || |
|
|
| T |
32267539 |
gaacttgtcacaaacaatagttgatgatgaagcactttatatgatctcaaagagttgttgtgggcttttgaaattgtcacttaaaaattgtaatgatatc |
32267440 |
T |
|
| Q |
595 |
acagagaagggagtgaagcatgtggtagaaaactgcac |
632 |
Q |
| |
|
||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
32267439 |
acaaagaagggagtgaagcatgtagtagaaaactgcac |
32267402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 307 - 623
Target Start/End: Original strand, 41889399 - 41889717
Alignment:
| Q |
307 |
acatcaaaatgtttgcttcagtattcccaaatttgcagctacttgatttgagtcatttcattgatatgtctgaagaagatatttgacaaattttaaggag |
406 |
Q |
| |
|
|||||| |||||||||||| | ||||| ||||||||||||||||||||||| ||| | || | ||| |||| |||| ||| ||||||||| |
|
|
| T |
41889399 |
acatcataatgtttgcttccattttccctaatttgcagctacttgatttgagcaattgttgtcgcatatttgatgaaggtattactcaagttttaaggat |
41889498 |
T |
|
| Q |
407 |
atgttgtgaaattagagaattgaacttagcctagttttcaagagtgaggctacgcaaaatgaactttgaagtttctaaactggagtcgttgaacttgtca |
506 |
Q |
| |
|
||||||| | |||||| | ||||||||| || | ||||| ||||| ||||| ||||||||||| ||||| | ||| ||||| ||||||||| ||| |
|
|
| T |
41889499 |
atgttgtaacattagatatttgaacttatccggatgttcaatagtgaagctacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatca |
41889598 |
T |
|
| Q |
507 |
cat--aaaagtagatgataaagcactctttgcgatctcaaagagttgctctgggcttttacaactgtcattggaaaattgttgtaatgtcacagagaagg |
604 |
Q |
| |
|
|| |||||| |||||| || |||| | | ||||||||||||||| | ||||||| || ||| | | ||||||||| | |||||||| |||||| |
|
|
| T |
41889599 |
tatacaaaagttgatgatgaaacactttataagatctcaaagagttgttgcgggctttcgaaattgttacttaaaaattgttatgatgtcacaaagaagg |
41889698 |
T |
|
| Q |
605 |
gagtgaagcatgtggtaga |
623 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
41889699 |
gagtgaatcatgtggtaga |
41889717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 517 - 655
Target Start/End: Complemental strand, 12845635 - 12845497
Alignment:
| Q |
517 |
gatgataaagcactctttgcgatctcaaagagttgctctgggcttttacaactgtcattggaaaattgttgtaatgtcacagagaagggagtgaagcatg |
616 |
Q |
| |
|
|||||| ||||||| | ||| |||||||||||||| | ||| || || ||| || ||||||||||| | |||| |||||||||||||||| ||| | |
|
|
| T |
12845635 |
gatgatgaagcactatatgcaatctcaaagagttgttgtggtctattgcaattggacctggaaaattgtaatgatgttacagagaagggagtgaggcaag |
12845536 |
T |
|
| Q |
617 |
tggtagaaaactgcacacaattgagagtcatcaatttga |
655 |
Q |
| |
|
|||||| ||| |||||| | ||||||| |||||||||| |
|
|
| T |
12845535 |
tggtagcaaaatgcacaaagttgagagagatcaatttga |
12845497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 589 - 654
Target Start/End: Original strand, 38267685 - 38267750
Alignment:
| Q |
589 |
aatgtcacagagaagggagtgaagcatgtggtagaaaactgcacacaattgagagtcatcaatttg |
654 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||| ||||||||||| || | |||| ||||||||| |
|
|
| T |
38267685 |
aatgtcaccgagaagggagtgatgcatgtggtcaaaaactgcacaaaactcagagagatcaatttg |
38267750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 375 - 636
Target Start/End: Original strand, 1037577 - 1037840
Alignment:
| Q |
375 |
tctgaagaagatatttgacaaattttaaggagatgttgtgaaattagagaattgaacttagcctagttttcaagagtgaggctacgcaaaatgaactttg |
474 |
Q |
| |
|
|||||||||| |||||| || ||||||||||||||||| | ||||| | ||||| |||||||| | ||||||||||| |||| | ||| |||||| |
|
|
| T |
1037577 |
tctgaagaaggtatttgtgaagttttaaggagatgttgtaaggttagacatttgaatttagcctactattcaagagtgaaactacttagaataaacttta |
1037676 |
T |
|
| Q |
475 |
aagtttctaaactggagtcgttgaacttgtcacataaaagta--gatgataaagcactctttgcgatctcaaagagttgctctgggcttttacaactgtc |
572 |
Q |
| |
|
||||| || || | ||| ||| ||||||||||||| | || |||||| || |||||| | ||||||||||| ||| | ||||||||||||||||| |
|
|
| T |
1037677 |
aagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatgatgaaacactctatatgatctcaaagaattgttgtgggcttttacaactgtt |
1037776 |
T |
|
| Q |
573 |
attggaaaattgttgtaatgtcacagagaagggagtgaagcatgtggtagaaaactgcacacaa |
636 |
Q |
| |
|
||||||||||| | | ||||||||||| || ||||| ||||| || ||||||||||||||| |
|
|
| T |
1037777 |
tctggaaaattgtgatgaagtcacagagaatggtgtgaaacatgtagtcgaaaactgcacacaa |
1037840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 537 - 727
Target Start/End: Original strand, 45245162 - 45245352
Alignment:
| Q |
537 |
gatctcaaagagttgctctgggcttttacaactgtcattggaaaattgttgtaatgtcacagagaagggagtgaagcatgtggtagaaaactgcacacaa |
636 |
Q |
| |
|
||||||||||||||| ||||||||| ||||| | |||| |||| |||| | |||||||||| ||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
45245162 |
gatctcaaagagttgtcgtgggcttttgcaactattattgaaaaaatgttatcatgtcacagataagggagtgaaacatgtggtagaaaattgcacacaa |
45245261 |
T |
|
| Q |
637 |
ttgagagtcatcaatttgacgaactgtcataaagtgcacgctgatgttgttgcaccgatgctgctttcaaggccatcgttgagaaagataa |
727 |
Q |
| |
|
| | || |||||||||| | |||| | ||||||| ||| ||||| ||| ||||| | |||||||||||||||||| |||||||| |
|
|
| T |
45245262 |
cttacagagatcaatttgaggcactgctttcaagtgcatgctaatgttattgtctcgatggtattttcaaggccatcgttgaaaaagataa |
45245352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 608 - 723
Target Start/End: Original strand, 44575643 - 44575758
Alignment:
| Q |
608 |
tgaagcatgtggtagaaaactgcacacaattgagagtcatcaatttgacgaactgtcataaagtgcacgctgatgttgttgcaccgatgctgctttcaag |
707 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||| ||||||||| || ||| |||| ||||| ||||||| |||| || || | |||||||| |
|
|
| T |
44575643 |
tgaatcatgtggtagaaaactgcacacaaccgagagagctcaatttgagaaattgtgataatgtgcatcgtgatgttcttgcctcgttgatactttcaag |
44575742 |
T |
|
| Q |
708 |
gccatcgttgagaaag |
723 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
44575743 |
gccatcattgagaaag |
44575758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 518 - 643
Target Start/End: Original strand, 15092209 - 15092334
Alignment:
| Q |
518 |
atgataaagcactctttgcgatctcaaagagttgctctgggcttttacaactgtcattggaaaattgttgtaatgtcacagagaagggagtgaagcatgt |
617 |
Q |
| |
|
|||||||| |||||| |||||||||||||| ||| | ||||||||| ||||| | | | ||| ||||| |||||||||||| ||||||||| ||||| |
|
|
| T |
15092209 |
atgataaaacactctatgcgatctcaaagaattgttgtgggcttttgcaactattacttgaattttgttataatgtcacagaagtgggagtgaaacatgt |
15092308 |
T |
|
| Q |
618 |
ggtagaaaactgcacacaattgagag |
643 |
Q |
| |
|
| |||||||||||||||||||||||| |
|
|
| T |
15092309 |
gctagaaaactgcacacaattgagag |
15092334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 588 - 643
Target Start/End: Complemental strand, 10614564 - 10614509
Alignment:
| Q |
588 |
taatgtcacagagaagggagtgaagcatgtggtagaaaactgcacacaattgagag |
643 |
Q |
| |
|
|||||||||||| | |||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
10614564 |
taatgtcacagaagaaggagtgaaacatgtggtagaaaactgcatgcaattgagag |
10614509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 15)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 517 - 642
Target Start/End: Original strand, 6603259 - 6603384
Alignment:
| Q |
517 |
gatgataaagcactctttgcgatctcaaagagttgctctgggcttttacaactgtcattggaaaattgttgtaatgtcacagagaagggagtgaagcatg |
616 |
Q |
| |
|
|||||| || || ||| |||||||||||||||||| |||||||||| |||| | |||| || |||||| | ||||||||||||| |||||||| |||| |
|
|
| T |
6603259 |
gatgatgaaacagtctatgcgatctcaaagagttgtcctgggcttttggaactattattgaaatattgttattatgtcacagagaaaggagtgaaacatg |
6603358 |
T |
|
| Q |
617 |
tggtagaaaactgcacacaattgaga |
642 |
Q |
| |
|
||||||||||||||| |||| ||||| |
|
|
| T |
6603359 |
tggtagaaaactgcaaacaactgaga |
6603384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 381 - 642
Target Start/End: Complemental strand, 6432341 - 6432078
Alignment:
| Q |
381 |
gaagatatttgacaaattttaaggagatgttgtgaaattagagaattgaacttagcctagttttcaagagtgaggctacgcaaaatgaactttgaagttt |
480 |
Q |
| |
|
|||| |||||| ||| ||||||||||||||||| || ||| | | |||||||||||||| | | || ||||| ||||| |||||||||||||||| |
|
|
| T |
6432341 |
gaaggtatttgtcaagttttaaggagatgttgtaaacttaaacatttgaacttagcctattgtataaaagtgaagctacatggaatgaactttgaagttc |
6432242 |
T |
|
| Q |
481 |
ctaaactggagtcgttgaacttgtcacataaaag--tagatgataaagcactctttgcgatctcaaagagttgctctgggcttttacaactgtcattgga |
578 |
Q |
| |
|
| || ||| || ||||||||||||| ||| ||| | |||||| || |||| | || ||||| ||||| ||| | ||||||| | ||||| | || | |
|
|
| T |
6432241 |
ccaagctgaaggtgttgaacttgtcaaatacaagcgttgatgatgaaacactttatgtgatcttaaagaattgttgtgggcttctgcaactattcctgta |
6432142 |
T |
|
| Q |
579 |
aaattgttgtaatgtcacagagaagggagtgaagcatgtggtagaaaactgcacacaattgaga |
642 |
Q |
| |
|
|||||| |||||||||| ||||||||||||| | |||||||||||| ||||||||||||||| |
|
|
| T |
6432141 |
caattgtgataatgtcacacagaagggagtgaaacttgtggtagaaaaatgcacacaattgaga |
6432078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 381 - 643
Target Start/End: Complemental strand, 6403040 - 6402776
Alignment:
| Q |
381 |
gaagatatttgacaaattttaaggagatgttgtgaaattagagaattgaacttagcctagttttcaagagtgaggctacgcaaaatgaactttgaagttt |
480 |
Q |
| |
|
|||| |||||| ||| ||||||||||||||||| | ||||| | ||||||||| | || ||||||||||| ||||| ||| ||||||| |||| |
|
|
| T |
6403040 |
gaaggtatttgtcaagttttaaggagatgttgtaacattaggcatttgaacttaactgggtgttcaagagtgaagctacttggaataaactttgcagttc |
6402941 |
T |
|
| Q |
481 |
ctaaactggagtcgttgaacttgtcacata--aaagtagatgataaagcactctttgcgatctcaaagagttgctctgggcttttacaactgtcattgga |
578 |
Q |
| |
|
| |||| || ||||||||||||| ||| || || |||||| || |||||| || ||||||||||| ||| ||||||||| |||| | |||| |
|
|
| T |
6402940 |
cccaactagaagtgttgaacttgtcagatacgaaggttgatgatgaaacactctatgtgatctcaaagaattgtagtgggcttttgaaactattattgag |
6402841 |
T |
|
| Q |
579 |
aaattgttgtaatgtcacagagaagggagtgaagcatgtggtagaaaactgcacacaattgagag |
643 |
Q |
| |
|
| |||||| |||||||||||| ||||||| ||| |||||| |||||||||| |||||| |||||| |
|
|
| T |
6402840 |
agattgttataatgtcacagaaaagggagcgaaacatgtgatagaaaactgtacacaactgagag |
6402776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 532 - 636
Target Start/End: Complemental strand, 19632466 - 19632362
Alignment:
| Q |
532 |
tttgcgatctcaaagagttgctctgggcttttacaactgtcattggaaaattgttgtaatgtcacagagaagggagtgaagcatgtggtagaaaactgca |
631 |
Q |
| |
|
|||| ||||||||||| ||| | ||||||||| ||||| | | || |||||||| |||| ||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
19632466 |
tttgtgatctcaaagaattgttgtgggcttttgcaactcttactgaaaaattgtgctaatatcacagagaagggagtgaaacacgtggtagaaaactgca |
19632367 |
T |
|
| Q |
632 |
cacaa |
636 |
Q |
| |
|
|||| |
|
|
| T |
19632366 |
aacaa |
19632362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 537 - 643
Target Start/End: Original strand, 6594683 - 6594789
Alignment:
| Q |
537 |
gatctcaaagagttgctctgggcttttacaactgtcattggaaaattgttgtaatgtcacagagaagggagtgaagcatgtggtagaaaactgcacacaa |
636 |
Q |
| |
|
||||||||||| ||| | ||||||||||||||| | | ||||||||| | || |||||||| |||||| || |||||||||||||||||||||||| |
|
|
| T |
6594683 |
gatctcaaagaattgttgtgggcttttacaactaaaactagaaaattgtgatcatctcacagaggagggagccaaacatgtggtagaaaactgcacacaa |
6594782 |
T |
|
| Q |
637 |
ttgagag |
643 |
Q |
| |
|
||||||| |
|
|
| T |
6594783 |
ttgagag |
6594789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 589 - 643
Target Start/End: Complemental strand, 6394834 - 6394780
Alignment:
| Q |
589 |
aatgtcacagagaagggagtgaagcatgtggtagaaaactgcacacaattgagag |
643 |
Q |
| |
|
||||||||||| ||||| ||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
6394834 |
aatgtcacagaaaagggtgtggaacatgtggtagaaaactgcacacaattgagag |
6394780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 642
Target Start/End: Original strand, 6585270 - 6585419
Alignment:
| Q |
495 |
ttgaacttgtcacataaaa--gtagatgataaagcactctttgcgatctcaaagagttgctctgggcttttacaactgtcattggaaaattgttgtaatg |
592 |
Q |
| |
|
|||||||||||| ||| || || |||||| || |||||| || ||||||||||||||| |||| |||||| |||| | | || || |||| |||| |
|
|
| T |
6585270 |
ttgaacttgtcagatacaaaggttgatgatgaaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatg |
6585369 |
T |
|
| Q |
593 |
tcacagagaagggagtgaagcatgtggtagaaaactgcacacaattgaga |
642 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||| ||||||||| ||||| |
|
|
| T |
6585370 |
tcacagagaagggactgaaacatgtggtagaaatttgcacacaactgaga |
6585419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 577 - 635
Target Start/End: Complemental strand, 14818364 - 14818306
Alignment:
| Q |
577 |
gaaaattgttgtaatgtcacagagaagggagtgaagcatgtggtagaaaactgcacaca |
635 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
14818364 |
gaaaattgtaataatgtcacagagaagggtgtgaaacatgtagtagaaaactgcacaca |
14818306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 293 - 358
Target Start/End: Complemental strand, 9411620 - 9411555
Alignment:
| Q |
293 |
gttaaaagataaaaacatcaaaatgtttgcttcagtattcccaaatttgcagctacttgatttgag |
358 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||| | ||||| ||||||||||| ||||||||||| |
|
|
| T |
9411620 |
gttaagagataaaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgatttgag |
9411555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 381 - 642
Target Start/End: Complemental strand, 7119337 - 7119074
Alignment:
| Q |
381 |
gaagatatttgacaaattttaaggagatgttgtgaaattagagaattgaacttagcctagttttcaagagtgaggctacgcaaaatgaactttgaagttt |
480 |
Q |
| |
|
|||| |||||| ||| ||||||||||||||| | | |||| | | |||||||||||| | | ||||||||||| ||||| ||||||||||| ||| |
|
|
| T |
7119337 |
gaaggtatttgtcaagttttaaggagatgttctaagattaaacatttgaacttagcccactgttcaagagtgaagctacttggaatgaactttgttgttc |
7119238 |
T |
|
| Q |
481 |
ctaaactggagtcgttgaacttgtcacata--aaagtagatgataaagcactctttgcgatctcaaagagttgctctgggcttttacaactgtcattgga |
578 |
Q |
| |
|
| |||||| ||||||||||||| ||| || || |||||| || ||||| || |||||| |||| ||| | |||||||| |||| | | || | |
|
|
| T |
7119237 |
accagctggaggtgttgaacttgtcagatacgaaggttgatgatgaaacactccatgtgatctcgaagaattgttgcgggcttttggaactattactgaa |
7119138 |
T |
|
| Q |
579 |
aaattgttgtaatgtcacagagaagggagtgaagcatgtggtagaaaactgcacacaattgaga |
642 |
Q |
| |
|
| |||||| | |||||||| | || | |||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
7119137 |
agattgttattatgtcacaaaaaaagaagtgaaacatgtggaagaaaactgcacacaattgaga |
7119074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 381 - 642
Target Start/End: Complemental strand, 7131815 - 7131552
Alignment:
| Q |
381 |
gaagatatttgacaaattttaaggagatgttgtgaaattagagaattgaacttagcctagttttcaagagtgaggctacgcaaaatgaactttgaagttt |
480 |
Q |
| |
|
|||| |||||| ||| ||||||||||||||| | | |||| | | |||||||||||| | | ||||||||||| ||||| ||||||||||| ||| |
|
|
| T |
7131815 |
gaaggtatttgtcaagttttaaggagatgttctaagattaaacatttgaacttagcccactgttcaagagtgaagctacttggaatgaactttgttgttc |
7131716 |
T |
|
| Q |
481 |
ctaaactggagtcgttgaacttgtcacata--aaagtagatgataaagcactctttgcgatctcaaagagttgctctgggcttttacaactgtcattgga |
578 |
Q |
| |
|
| |||||| ||||||||||||| ||| || || |||||| || ||||| || |||||| |||| ||| | |||||||| |||| | | || | |
|
|
| T |
7131715 |
gccagctggaggtgttgaacttgtcagatacgaaggttgatgatgaaacactccatgtgatctcgaagaattgttgcgggcttttggaactattactgaa |
7131616 |
T |
|
| Q |
579 |
aaattgttgtaatgtcacagagaagggagtgaagcatgtggtagaaaactgcacacaattgaga |
642 |
Q |
| |
|
| |||||| | |||||||| | || | |||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
7131615 |
agattgttattatgtcacaaacaaagcagtgaaacatgtggaagaaaactgcacacaattgaga |
7131552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 590 - 635
Target Start/End: Complemental strand, 14820662 - 14820617
Alignment:
| Q |
590 |
atgtcacagagaagggagtgaagcatgtggtagaaaactgcacaca |
635 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||| ||||||||||||| |
|
|
| T |
14820662 |
atgtcacagagaagggtgtgaaacatgtggtaaaaaactgcacaca |
14820617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 464 - 643
Target Start/End: Complemental strand, 6423314 - 6423133
Alignment:
| Q |
464 |
aatgaactttgaagtttctaaactggagtcgttgaacttgtcacataaaagtagat---gataaagcactctttgcgatctcaaagagttgctctgggct |
560 |
Q |
| |
|
|||||||||| ||||| | || |||||| ||||||||||||| ||| ||| || | |||||| |||||| |||||||||||||||||| | |||| | |
|
|
| T |
6423314 |
aatgaacttttaagttcccaagctggaggtgttgaacttgtcaaatacaag-agttagcgataaaacactctatgcgatctcaaagagttgttgtgggat |
6423216 |
T |
|
| Q |
561 |
tttacaactgtcattggaaaattgttgtaatgtcacagagaagggagtgaagcatgtggtagaaaactgcacacaattgagag |
643 |
Q |
| |
|
||| ||||| | | | ||| ||||| | |||| ||| | || ||| |||| | ||||||| |||||||||||||||||||| |
|
|
| T |
6423215 |
tttgcaactattacttgaagattgtgattatgtaacaaacaaaggactgaaacgtgtggtattaaactgcacacaattgagag |
6423133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 590 - 634
Target Start/End: Original strand, 6589453 - 6589497
Alignment:
| Q |
590 |
atgtcacagagaagggagtgaagcatgtggtagaaaactgcacac |
634 |
Q |
| |
|
||||||| ||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
6589453 |
atgtcacggaggagggagtgaaacatgtggtagaaaactgcacac |
6589497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 592 - 636
Target Start/End: Original strand, 10579869 - 10579913
Alignment:
| Q |
592 |
gtcacagagaagggagtgaagcatgtggtagaaaactgcacacaa |
636 |
Q |
| |
|
|||||| |||||||||| || |||||||||||||||||||||||| |
|
|
| T |
10579869 |
gtcacaaagaagggagttaaacatgtggtagaaaactgcacacaa |
10579913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0295 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0295
Description:
Target: scaffold0295; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 375 - 636
Target Start/End: Original strand, 537 - 800
Alignment:
| Q |
375 |
tctgaagaagatatttgacaaattttaaggagatgttgtgaaattagagaattgaacttagcctagttttcaagagtgaggctacgcaaaatgaactttg |
474 |
Q |
| |
|
|||||||||| |||||| || || |||||||||||||| | |||| | ||||| |||||||| | ||||||||||| |||| | ||| |||||| |
|
|
| T |
537 |
tctgaagaaggtatttgtgaagttctaaggagatgttgtaaggctagacatttgaatttagcctactgttcaagagtgaaactacttagaataaacttta |
636 |
T |
|
| Q |
475 |
aagtttctaaactggagtcgttgaacttgtcacataaaagta--gatgataaagcactctttgcgatctcaaagagttgctctgggcttttacaactgtc |
572 |
Q |
| |
|
||||| || || | ||| ||| ||||||||||||| |||| |||||| || |||||| | |||||| |||| ||| | |||||| |||||||||| |
|
|
| T |
637 |
aagttcctgaattagaggtgtttaacttgtcacatacaagtgtcgatgatgaaacactctatatgatctcgaagaattgttgtgggctattacaactgtt |
736 |
T |
|
| Q |
573 |
attggaaaattgttgtaatgtcacagagaagggagtgaagcatgtggtagaaaactgcacacaa |
636 |
Q |
| |
|
| ||||||||||| | | |||| |||||| || ||||| ||||| |||||||||||||||||| |
|
|
| T |
737 |
actggaaaattgtgatgaagtcatagagaatggtgtgaaacatgtagtagaaaactgcacacaa |
800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 5e-18; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 517 - 632
Target Start/End: Complemental strand, 7554530 - 7554415
Alignment:
| Q |
517 |
gatgataaagcactctttgcgatctcaaagagttgctctgggcttttacaactgtcattggaaaattgttgtaatgtcacagagaagggagtgaagcatg |
616 |
Q |
| |
|
|||||| ||||||||| | ||||||||||||||| ||| ||||||||||||| | || || ||| |||||||||||| |||||||||||||||| |
|
|
| T |
7554530 |
gatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttactgaaaggatgtgataatgtcacagaaaagggagtgaagcatg |
7554431 |
T |
|
| Q |
617 |
tggtagaaaactgcac |
632 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
7554430 |
tggtagaaaactgcac |
7554415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 293 - 353
Target Start/End: Complemental strand, 9586904 - 9586844
Alignment:
| Q |
293 |
gttaaaagataaaaacatcaaaatgtttgcttcagtattcccaaatttgcagctacttgat |
353 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||| | ||||| ||||||||||| |||||| |
|
|
| T |
9586904 |
gttaagagataaaaacatcataatgtttgcttcaattttccccaatttgcagctgcttgat |
9586844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 294 - 353
Target Start/End: Complemental strand, 9581335 - 9581276
Alignment:
| Q |
294 |
ttaaaagataaaaacatcaaaatgtttgcttcagtattcccaaatttgcagctacttgat |
353 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||| | ||||| ||||||||||| |||||| |
|
|
| T |
9581335 |
ttaagagataaaaacatcataatgtttgcttcaattttccccaatttgcagctgcttgat |
9581276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 537 - 643
Target Start/End: Complemental strand, 39206 - 39100
Alignment:
| Q |
537 |
gatctcaaagagttgctctgggcttttacaactgtcattggaaaattgttgtaatgtcacagagaagggagtgaagcatgtggtagaaaactgcacacaa |
636 |
Q |
| |
|
||||||||||||||| ||||||||| || ||| | ||||||| |||| | ||||||| |||||||||||| ||||||||| | |||||||| ||| |
|
|
| T |
39206 |
gatctcaaagagttgtagtgggcttttgcacctgatactggaaaaatgttctcgtgtcacaatgaagggagtgaaacatgtggtaaacaactgcacgcaa |
39107 |
T |
|
| Q |
637 |
ttgagag |
643 |
Q |
| |
|
|||||| |
|
|
| T |
39106 |
ctgagag |
39100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University