View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8501_low_10 (Length: 448)
Name: NF8501_low_10
Description: NF8501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8501_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 9 - 435
Target Start/End: Complemental strand, 41141876 - 41141444
Alignment:
| Q |
9 |
agcagagaaggagaacccaaattggaccaaatttggggtagaaaatcttccaaccaaggcttctgattcatcaccgtcatcaaaggtgatttttcataat |
108 |
Q |
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| T |
41141876 |
agcagagaaggagaacccaaattggaccaaatttggggtagaaaatcttccaaccaaggcttctgattcatcaccgtcatcaaaggtgatttttcataat |
41141777 |
T |
|
| Q |
109 |
ttagagcaagaagttccgatttattctagtttgcgtttatgnnnnnnnnnn-ctttctgattcattatgcagatgttgtgacttactatttgctttttca |
207 |
Q |
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| T |
41141776 |
ttagagcaagaagttccgatttattctagtttgcgtttatgtttttttttttctttctgattcattatgcagatgttgtgacttactatttgctttttca |
41141677 |
T |
|
| Q |
208 |
tgtttagtacattaattttctgtgtatagataaaattcttctgttgttt-----ccaactcatatggtgtaaaatgaaactatatttgcaggttactact |
302 |
Q |
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| T |
41141676 |
tgtttagtgtattaattttctgtgtatagataaaattcttctgttgtttggtttccaactcatatggtgtaaaatgaaactatatttgcaggttactact |
41141577 |
T |
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| Q |
303 |
gcagatccaattgtgaacaaatatatagccatgggactcagccgagacgtagttcctattgctgttaagaattatggtgataatcctaccaaagtatgtt |
402 |
Q |
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| T |
41141576 |
gcagatccaattgtgaacaaatatatagccatgggactcagccgagacgtagttcctattgctgttaagaattatggtgataatcctaccaaagtatgtt |
41141477 |
T |
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| Q |
403 |
ctctgttccggtaacttataatgaacatgatgt |
435 |
Q |
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| T |
41141476 |
ctctgttccggtaacttataatgaacatgatgt |
41141444 |
T |
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