View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8501_low_12 (Length: 394)

Name: NF8501_low_12
Description: NF8501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8501_low_12
NF8501_low_12
[»] chr1 (7 HSPs)
chr1 (17-333)||(4208022-4208326)
chr1 (178-260)||(32594785-32594868)
chr1 (163-207)||(30630946-30630990)
chr1 (167-248)||(34364502-34364584)
chr1 (178-242)||(40082413-40082478)
chr1 (167-239)||(41184515-41184588)
chr1 (167-230)||(50469180-50469244)
[»] chr8 (2 HSPs)
chr8 (178-260)||(1014314-1014397)
chr8 (167-237)||(4154372-4154443)
[»] chr4 (3 HSPs)
chr4 (167-241)||(11348414-11348489)
chr4 (167-207)||(1731768-1731808)
chr4 (178-253)||(39792934-39793010)
[»] chr3 (3 HSPs)
chr3 (165-253)||(39336305-39336394)
chr3 (178-241)||(37726510-37726574)
chr3 (176-235)||(54769708-54769768)
[»] chr6 (2 HSPs)
chr6 (178-260)||(2578904-2578986)
chr6 (178-253)||(3409265-3409341)
[»] chr2 (3 HSPs)
chr2 (167-260)||(33561520-33561614)
chr2 (167-239)||(33953861-33953934)
chr2 (164-239)||(40733509-40733585)
[»] scaffold0171 (1 HSPs)
scaffold0171 (167-208)||(17578-17619)
[»] chr7 (2 HSPs)
chr7 (167-239)||(1085706-1085779)
chr7 (167-239)||(34218124-34218197)
[»] scaffold0734 (1 HSPs)
scaffold0734 (167-238)||(5391-5463)


Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 333
Target Start/End: Complemental strand, 4208326 - 4208022
Alignment:
Q  17 aataattaggatagcgaaagtggaagaaaattggtgattacgcaagtcactttacttcctaagtgcttggtatttgtataaaattgagattataactagt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4208326 aataattaggatagcgaaagtggaagaaaattggtgattacgcaagtcactttacttcctaagtgcttggtattagtataaaattgagattataactagt 4208227  T
Q  117 tgatgtctatgtggctctggtttgctttctacgaaataccatactatttattgtgtgcgaatgtgagttatatgtcatacatcagataaaatgtgaatgt 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4208226 tgatgtctatgtggctctggtttgctttctacgaaataccatactatttattgtgtgcgagtgtgagttatatgtcatacatcagataaaatgtgaatgt 4208127  T
Q  217 tgaatactttataagtgagaggatcagtaaactcattatcttaannnnnnnnnnaataaaagtgtgatgtatctttcacttatatacttactcggaccta 316  Q
    | ||||||||||||||||||| |  | ||||   |  || |||           ||||||||||||||||||||||| ||| ||||||||||||||||||    
T  4208126 taaatactttataagtgagagaaaga-taaaaataaaatgtta-----------aataaaagtgtgatgtatctttcccttgtatacttactcggaccta 4208039  T
Q  317 aatgtgggtgtttttcc 333  Q
    |||||||||||||||||    
T  4208038 aatgtgggtgtttttcc 4208022  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 260
Target Start/End: Complemental strand, 32594868 - 32594785
Alignment:
Q  178 tgtgagttatatgtcatacatcagataaaat-gtgaatgttgaatactttataagtgagaggatcagtaaactcattatcttaa 260  Q
    ||||||||||||||| ||||||||||||||| || || |||||| || |||||||| |||||| |  |||||||||| ||||||    
T  32594868 tgtgagttatatgtcctacatcagataaaatagtaaaggttgaacaccttataagtaagaggacccataaactcattgtcttaa 32594785  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 30630990 - 30630946
Alignment:
Q  163 tttattgtgtgcgaatgtgagttatatgtcatacatcagataaaa 207  Q
    ||||||||||||||||| |||||||||||| |||||| |||||||    
T  30630990 tttattgtgtgcgaatgcgagttatatgtcttacatcggataaaa 30630946  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 248
Target Start/End: Original strand, 34364502 - 34364584
Alignment:
Q  167 ttgtgtgcgaatgtgagttatatgtcatacatcagataaaat-gtgaatgttgaatactttataagtgagaggatcagtaaac 248  Q
    |||||||| | |||||||||||||||  ||||| |||||||| || || |||||| || |||||||| |||||||| ||||||    
T  34364502 ttgtgtgcaagtgtgagttatatgtctcacatcggataaaatagtaaaggttgaacaccttataagtaagaggatccgtaaac 34364584  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 40082413 - 40082478
Alignment:
Q  178 tgtgagttatatgtcatacatcagataaaat-gtgaatgttgaatactttataagtgagaggatca 242  Q
    ||||||||||||||| |||||| |||||||| || || |||||| || |||||||| |||||||||    
T  40082413 tgtgagttatatgtcctacatcggataaaatagtaaaggttgaacaccttataagtaagaggatca 40082478  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 239
Target Start/End: Complemental strand, 41184588 - 41184515
Alignment:
Q  167 ttgtgtgcgaatgtgagttatatgtcatacatcagataaaat-gtgaatgttgaatactttataagtgagagga 239  Q
    |||||||| | |||||||||||||||  ||||| |||||||| || || |||||| ||||||||||| ||||||    
T  41184588 ttgtgtgcaagtgtgagttatatgtctcacatcggataaaatagtaaaggttgaacactttataagtaagagga 41184515  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 230
Target Start/End: Complemental strand, 50469244 - 50469180
Alignment:
Q  167 ttgtgtgcgaatgtgagttatatgtcatacatcagataa-aatgtgaatgttgaatactttataa 230  Q
    |||||||| | ||||||||||||||| |||||||||||| || || || |||||| |||||||||    
T  50469244 ttgtgtgcaagtgtgagttatatgtcctacatcagataataaagtaaaggttgaacactttataa 50469180  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 260
Target Start/End: Complemental strand, 1014397 - 1014314
Alignment:
Q  178 tgtgagttatatgtcatacatcagataaaat-gtgaatgttgaatactttataagtgagaggatcagtaaactcattatcttaa 260  Q
    ||||||||||||||||||||||||||||||| || || |||||| || |||||||| |||||| | |||||||| ||| |||||    
T  1014397 tgtgagttatatgtcatacatcagataaaatagtaaaggttgaacaccttataagtaagaggacccgtaaactcgttaccttaa 1014314  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 237
Target Start/End: Complemental strand, 4154443 - 4154372
Alignment:
Q  167 ttgtgtgcgaatgtgagttatatgtcatacatcagata-aaatgtgaatgttgaatactttataagtgagag 237  Q
    |||||||| ||||||||||||||||| ||||||||||| ||| ||| | |||||| ||||||||||||||||    
T  4154443 ttgtgtgcaaatgtgagttatatgtcctacatcagatagaaaagtggaggttgaacactttataagtgagag 4154372  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 241
Target Start/End: Complemental strand, 11348489 - 11348414
Alignment:
Q  167 ttgtgtgcgaatgtgagttatatgtcatacatcagataaaat-gtgaatgttgaatactttataagtgagaggatc 241  Q
    |||||||| | ||||||||||||||  ||||||||||||||| ||| | |||||| ||||||||||||||||||||    
T  11348489 ttgtgtgcaattgtgagttatatgttctacatcagataaaatagtggaggttgaacactttataagtgagaggatc 11348414  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 1731808 - 1731768
Alignment:
Q  167 ttgtgtgcgaatgtgagttatatgtcatacatcagataaaa 207  Q
    |||||||| |||||||||||||||||  |||||||||||||    
T  1731808 ttgtgtgcaaatgtgagttatatgtcccacatcagataaaa 1731768  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 253
Target Start/End: Complemental strand, 39793010 - 39792934
Alignment:
Q  178 tgtgagttatatgtcatacatcagata-aaatgtgaatgttgaatactttataagtgagaggatcagtaaactcatt 253  Q
    |||||||||||||||  |||||||||| ||| || ||||||||| || |||||||  |||||| | |||||||||||    
T  39793010 tgtgagttatatgtcccacatcagatagaaaagtaaatgttgaacaccttataagaaagaggaaccgtaaactcatt 39792934  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 165 - 253
Target Start/End: Complemental strand, 39336394 - 39336305
Alignment:
Q  165 tattgtgtgcgaatgtgagttatatgtcatacatcagataaaatgt-gaatgttgaatactttataagtgagaggatcagtaaactcatt 253  Q
    |||||||||| | |||||||||||||||  ||||| |||| || || | | |||||| ||||||||||||||||||||  ||||||||||    
T  39336394 tattgtgtgcaagtgtgagttatatgtcccacatcggatagaaagttggaggttgaacactttataagtgagaggatccataaactcatt 39336305  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 37726510 - 37726574
Alignment:
Q  178 tgtgagttatatgtcatacatcagataaaat-gtgaatgttgaatactttataagtgagaggatc 241  Q
    |||||||||||||||  ||||| |||||||| || |||||||||||| |||||||| ||||||||    
T  37726510 tgtgagttatatgtctcacatcggataaaatagtaaatgttgaataccttataagtaagaggatc 37726574  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 54769768 - 54769708
Alignment:
Q  176 aatgtgagttatatgtcatacatcagata-aaatgtgaatgttgaatactttataagtgag 235  Q
    ||||||||||||||||| ||||||| ||| ||| ||||| |||||  ||||||||||||||    
T  54769768 aatgtgagttatatgtcgtacatcaaatagaaaagtgaaagttgatcactttataagtgag 54769708  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 260
Target Start/End: Complemental strand, 2578986 - 2578904
Alignment:
Q  178 tgtgagttatatgtcatacatcagataaaatgtgaatgttgaatactttataagtgagaggatcagtaaactcattatcttaa 260  Q
    ||||| |||||||||   |||| ||||||| || |||||||||||| |||||| | ||||||||  ||||||||||| |||||    
T  2578986 tgtgatttatatgtccctcatcggataaaaagtaaatgttgaataccttataaataagaggatccataaactcattaccttaa 2578904  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 253
Target Start/End: Original strand, 3409265 - 3409341
Alignment:
Q  178 tgtgagttatatgtcatacatcagataaaat-gtgaatgttgaatactttataagtgagaggatcagtaaactcatt 253  Q
    |||||||||||||||  |||||||||||||| || || |||||| || |||||||| |||||| |  ||||||||||    
T  3409265 tgtgagttatatgtcccacatcagataaaatagtaaaggttgaacaccttataagtaagaggacccataaactcatt 3409341  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 260
Target Start/End: Complemental strand, 33561614 - 33561520
Alignment:
Q  167 ttgtgtgcgaatgtgagttatatgtcatacatcagata-aaatgtgaatgttgaatactttataagtgagaggatcagtaaactcattatcttaa 260  Q
    |||||||| | ||||||||||||||   |||||||||| ||| ||| | ||| || |||||||||||||||||| |  |||||||||| ||||||    
T  33561614 ttgtgtgcaagtgtgagttatatgttccacatcagatagaaaagtggaggttaaacactttataagtgagaggacccataaactcattgtcttaa 33561520  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 239
Target Start/End: Complemental strand, 33953934 - 33953861
Alignment:
Q  167 ttgtgtgcgaatgtgagttatatgtcatacatcagata-aaatgtgaatgttgaatactttataagtgagagga 239  Q
    |||||||| ||||||||||||| |||  |||||||||| ||| ||| | |||||| ||| ||||||||||||||    
T  33953934 ttgtgtgcaaatgtgagttataagtcccacatcagatagaaaagtggaggttgaacactatataagtgagagga 33953861  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 239
Target Start/End: Original strand, 40733509 - 40733585
Alignment:
Q  164 ttattgtgtgcgaatgtgagttatatgtcatacatcagat-aaaatgtgaatgttgaatactttataagtgagagga 239  Q
    ||||||||| | | |||||||||||||||  ||||||||| |||| || ||||||||| || |||||||| ||||||    
T  40733509 ttattgtgtacaagtgtgagttatatgtcccacatcagataaaaaagtaaatgttgaacaccttataagtaagagga 40733585  T

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Target: scaffold0171 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 17619 - 17578
Alignment:
Q  167 ttgtgtgcgaatgtgagttatatgtcatacatcagataaaat 208  Q
    |||||||| | |||||||||||||||| ||||||||||||||    
T  17619 ttgtgtgcaagtgtgagttatatgtcacacatcagataaaat 17578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 239
Target Start/End: Complemental strand, 1085779 - 1085706
Alignment:
Q  167 ttgtgtgcgaatgtgagttatatgtcatacatcagataaaat-gtgaatgttgaatactttataagtgagagga 239  Q
    |||||||| | |||||||||||||||  ||||| |||||||| || || |||||| ||||||||||| ||||||    
T  1085779 ttgtgtgcaagtgtgagttatatgtcccacatcggataaaatagtaaaggttgaacactttataagtaagagga 1085706  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 239
Target Start/End: Complemental strand, 34218197 - 34218124
Alignment:
Q  167 ttgtgtgcgaatgtgagttatatgtcatacatcagat-aaaatgtgaatgttgaatactttataagtgagagga 239  Q
    |||||| | |||||||||||||||||  ||||| ||| |||| || ||||||||| || |||||||||||||||    
T  34218197 ttgtgtacaaatgtgagttatatgtctcacatcggataaaaaagtaaatgttgaacaccttataagtgagagga 34218124  T

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Target: scaffold0734 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 238
Target Start/End: Original strand, 5391 - 5463
Alignment:
Q  167 ttgtgtgcgaatgtgagttatatgtcatacatcagataaaat-gtgaatgttgaatactttataagtgagagg 238  Q
    |||||||| | ||||||||||||||| |||||| |||||||| || || |||||| || |||||||| |||||    
T  5391 ttgtgtgcaagtgtgagttatatgtcctacatcggataaaatagtaaaggttgaacaccttataagtaagagg 5463  T

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