View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8501_low_15 (Length: 366)
Name: NF8501_low_15
Description: NF8501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8501_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 52270823 - 52270475
Alignment:
| Q |
1 |
ttatcctagcaaattttttaaataaaattgtaaggggtctatatgtgtagatgtttttctgacaacttcagtttatacttgaaccacaagactgttttta |
100 |
Q |
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| T |
52270823 |
ttatcctagcaaattttttaaataaaattgtagggggtctatatgtgtagatgtttttctgacaacttcagtttatacttgaaccacaagattgttttta |
52270724 |
T |
|
| Q |
101 |
tcagcaatacagaactgtatttgaggtgattatttctgagttatcttgttttaaatatttcagtcatcttttatcggtcgagcttcaaatcaatttatgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52270723 |
tcagcaatacagaactgtatttgaggtgattatttctgagttatcttgttttaaatatttcagtcatcttttatcggtcgagcttcaaatcaatttatgc |
52270624 |
T |
|
| Q |
201 |
cttcttctcaaaagcatggatcaagcaaggttcgatcgtcatatatatttgggcgagatgacagcaacagcagaccttcagtgttgatgtcagaggattc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52270623 |
cttcttctcaaaagcatggatcaagcaaggttcgatcgtcatatatatttgggcgagatgacagcaacagcagaccttcagtgttgatgtcagaggattc |
52270524 |
T |
|
| Q |
301 |
ttcagatacggtattgactatcagaaattcgaaaaactagcatggcatt |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52270523 |
ttcagatacggtattgactatcagaaattcgaaaaactagcatggcatt |
52270475 |
T |
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