View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8501_low_17 (Length: 343)
Name: NF8501_low_17
Description: NF8501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8501_low_17 |
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| [»] scaffold0557 (1 HSPs) |
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| [»] scaffold0726 (3 HSPs) |
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Alignment Details
Target: scaffold0557 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: scaffold0557
Description:
Target: scaffold0557; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 330
Target Start/End: Complemental strand, 9634 - 9313
Alignment:
| Q |
9 |
tcgtgttgtatgccaatatcaaaattaaattaatctttgatttaatatctctctatgagttagattttctttttcaaattcaatgtatttgatttgtgcc |
108 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
9634 |
tcgtggtgtatgccaatatcaaaattaaattaatctttgatttaatatctctctgtgagttagattttctttttcaaattcaatgtatttgatttgtgtc |
9535 |
T |
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| Q |
109 |
tattacggtctcttctaatgtgattgcaaatttgcaatagacnnnnnnnnnnnnnnnnnnnnggtctttgtagttaataatactattttttaaagtgggg |
208 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||| |
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| T |
9534 |
tattacgatctcttctaatgtgattgcaaatttgcaatagacttttgtgttttgtttttggtggtctttgtagttaataatactatttttcaaagcgggg |
9435 |
T |
|
| Q |
209 |
tatgatatgttcaaaagatttgagtgttttggtaagactttttatcgttctaaccatttcgtttctgtgaataattaccattttctactatataattcaa |
308 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
9434 |
tatgatatgttcaaaagatttgagtgttttggtaagaatttttatcgttctaaccatttcgtttttgtgaataattaccattttctactatataattcaa |
9335 |
T |
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| Q |
309 |
agtctttttccatgaaatatat |
330 |
Q |
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|||||||||||||||||||||| |
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| T |
9334 |
agtctttttccatgaaatatat |
9313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 9 - 330
Target Start/End: Original strand, 29465595 - 29465918
Alignment:
| Q |
9 |
tcgtgttgtatgccaatatcaaaattaaattaatctttgatttaatatctctctatgagttagattttctttttcaaattcaatgtatttgatttgtgcc |
108 |
Q |
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| T |
29465595 |
tcgtggtgtatgccaatatcaaaattaaattaatctttaatttaatatccctctgtgagttagattttctttttcaaattcaatgtatttgatttgtgcc |
29465694 |
T |
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| Q |
109 |
tattacggtctcttctaatgtgattgcaaatttgcaatagacnnnnnnnnnnnnnnnnnnnnggtctttgtagttaat---aatactattttttaaagtg |
205 |
Q |
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| T |
29465695 |
tattactatctcttctaatgtgattgcaaatttgcaacagacttttgtgttttgtttttggtggtctttgtagttaataataatactatttttcaaagtt |
29465794 |
T |
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| Q |
206 |
gggtatgatatgttcaaaagatttgagtgttttggtaagactttttatcgttctaaccatttcgtttctgtgaataattaccattttctactatataatt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
29465795 |
gggtatgatatgttcaaaagatttgagtgttttggtaaaactttctatcgttgtaaccatttcgtttttgtgaataattaccattttctactatataatt |
29465894 |
T |
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| Q |
306 |
caaagtctttttccatgaaatatat |
330 |
Q |
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| T |
29465895 |
caaagtc-ttttccatgaaatatat |
29465918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0726 (Bit Score: 96; Significance: 5e-47; HSPs: 3)
Name: scaffold0726
Description:
Target: scaffold0726; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 39 - 150
Target Start/End: Original strand, 2742 - 2853
Alignment:
| Q |
39 |
taatctttgatttaatatctctctatgagttagattttctttttcaaattcaatgtatttgatttgtgcctattacggtctcttctaatgtgattgcaaa |
138 |
Q |
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|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2742 |
taatctttaatttaatatctctctgtgagttagattttctttttcaaattcaatgtatttgatttgtgcctattacgatctcttctaatgtgattgcaaa |
2841 |
T |
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| Q |
139 |
tttgcaatagac |
150 |
Q |
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| T |
2842 |
tttacaatagac |
2853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0726; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 252 - 330
Target Start/End: Original strand, 2929 - 3007
Alignment:
| Q |
252 |
atcgttctaaccatttcgtttctgtgaataattaccattttctactatataattcaaagtctttttccatgaaatatat |
330 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2929 |
atcgttctaaccatttcgtttttgtgaataattaccattttctactatataattcaaattctttttccatgaaatatat |
3007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0726; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 2874 - 2930
Alignment:
| Q |
171 |
ggtctttgtagttaataatactattttttaaagtggggtatgatatgttcaaaagat |
227 |
Q |
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| T |
2874 |
ggtctttgtagttgataatactatttttcaaagcacggtatgctatgttcaaaagat |
2930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 203 - 330
Target Start/End: Original strand, 51091978 - 51092104
Alignment:
| Q |
203 |
gtggggtatgatatgttcaaaagatttgagtgttttggtaagactttttatcgttctaaccatttc--gtttctgtgaataattaccattttctactata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||| ||| ||||||||||| || ||||| ||| |
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| T |
51091978 |
gtggggtatgatatgttcaaaagatttgagtgttttggtaggacttttaatcgttctaactgtttcttttttgtgtgaataatt---atactctacgata |
51092074 |
T |
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| Q |
301 |
taattcaaagtctttttccatgaaatatat |
330 |
Q |
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|||| || ||||||||| |||||||||||| |
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| T |
51092075 |
taatacatagtcttttttcatgaaatatat |
51092104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 51091927 - 51091979
Alignment:
| Q |
183 |
taataatactattttttaaagtggggtatgatatgttcaaaagatttgagtgt |
235 |
Q |
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| T |
51091927 |
taataatactatttttctatgcggggtatgatatgttccaaagatttgagtgt |
51091979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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