View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8501_low_2 (Length: 565)
Name: NF8501_low_2
Description: NF8501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8501_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 1 - 547
Target Start/End: Original strand, 35107358 - 35107905
Alignment:
| Q |
1 |
tattagtatttgtattccaaggaatacttggtgttatacatagttggccttatactttgtaaaccattttcaagacagacttttaatgagctcaatggca |
100 |
Q |
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| T |
35107358 |
tattagtatttgtattccaaggaatacttggtgttatacttagttggccttatactttgtaaaccattttcaagacagacttttaatgagctcaatggca |
35107457 |
T |
|
| Q |
101 |
gatgacattggtactgtaactaattgtcattaaaattatgtattcctcgctttgtttcatatgagagtttgaaagtacgtttctcagccaaatggcttcg |
200 |
Q |
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| T |
35107458 |
gatgaaattggtactgtaactgattgtcattaaaattatgtattcctcgctttgtttcatatgagagtttgaaagtacgtttctcagccaaatggctttg |
35107557 |
T |
|
| Q |
201 |
actatagcagctttaacttcatattcgatttcaattgtgttttgattcactacatcttgccttcttgcttctctagacaacgtgaaacatactacctgat |
300 |
Q |
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| T |
35107558 |
actatagcagctttaacttcatattcgatttcaattatgttttgattcactacatcttgccttcttgcttctctagacaacgtgaaacatactacctgat |
35107657 |
T |
|
| Q |
301 |
ccaaagcagattattattatatatgaaattgttagagagtacttgttacggtaatctgcagctccataaacatacctcataatttcctttgcaggatgta |
400 |
Q |
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| T |
35107658 |
ccaaagcagattattattatatatgaaattgttagagagtacttgttacggtaatctgcagctccataaacatacctcataatttcctttgcacaatgta |
35107757 |
T |
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| Q |
401 |
tgattcttgaaagtatgcttatagatatctgtctggatgtagttaaatgcgtttcttttttg-aaagctaaaaacgtcattaatactatggtgaccagac |
499 |
Q |
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| T |
35107758 |
tgattcttgaaagtatgcttatagatatctgtctggatgtagttaaatgcgtttcttttttgaaaagctaaaaacgtcattaatactatggtgaccagac |
35107857 |
T |
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| Q |
500 |
cagttgagcacaagttgtgccaagtttatgctgcatacacttgggtgt |
547 |
Q |
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| T |
35107858 |
cagttgagcacaagttgtgccaagtttatgctgcatacacttgggtgt |
35107905 |
T |
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