View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8501_low_22 (Length: 291)
Name: NF8501_low_22
Description: NF8501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8501_low_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 25284198 - 25283956
Alignment:
| Q |
19 |
atgactgctatttggaaataactttccaacaaactgaagagnnnnnnnntgaaaacttaagcaacttggttttatgtttctcttgaaactgatttgtgat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25284198 |
atgactgctatttggaaataactttccaacaaactgaaaa---aaaaaatgaaaacttaagcaacttggttttatgtttctcttgaaactgatttgtgat |
25284102 |
T |
|
| Q |
119 |
ttgtgatatttcagcactaaaaaccctttctcattagtagcaatgttgggcatattgagttcttgatcttggataaatatgtaattactcaaaccttgaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25284101 |
ttgtgatatttcagcactaaaaaccctttctcattagttgcaatgttaggcatattgagttcttgatcttggataaatatgtaattactcaaaccttgaa |
25284002 |
T |
|
| Q |
219 |
tgattctaatttgtcgatgttcaattttagtcttcatacttaatct |
264 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
25284001 |
tgattctaattagtcgatgttcaattttagtcttcatacttaatct |
25283956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 68 - 271
Target Start/End: Original strand, 30343843 - 30344046
Alignment:
| Q |
68 |
tgaaaacttaagcaacttggttttatgtttctcttgaaactgatttgtgatttgtgatatttcagcactaaaaaccctttctcattagtagcaatgttgg |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30343843 |
tgaaaacttaagcaacttggttttatgtttcttttgaaaccgttttgtgatttgtgatatttcagcactaaagaccctttctcattagtagcaatgttgg |
30343942 |
T |
|
| Q |
168 |
gcatattgagttcttgatcttggataaatatgtaattactcaaaccttgaatgattctaatttgtcgatgttcaattttagtcttcatacttaatctaat |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30343943 |
gcatattgagttcttgatcttggataaataggtaattactcaagccttaaatgattctgattagtcgatgttcaattttagtcttcatacttaatctaat |
30344042 |
T |
|
| Q |
268 |
atgc |
271 |
Q |
| |
|
|||| |
|
|
| T |
30344043 |
atgc |
30344046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 68 - 271
Target Start/End: Complemental strand, 18985934 - 18985731
Alignment:
| Q |
68 |
tgaaaacttaagcaacttggttttatgtttctcttgaaactgatttgtgatttgtgatatttcagcactaaaaaccctttctcattagtagcaatgttgg |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
18985934 |
tgaaaacttaagcaacttggttttatgtttcttttgaaactgatttgtgatttgtgatatttcagcactaaagaccctttctcattagtagcaatgttgg |
18985835 |
T |
|
| Q |
168 |
gcatattgagttcttgatcttggataaatatgtaattactcaaaccttgaatgattctaatttgtcgatgttcaattttagtcttcatacttaatctaat |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18985834 |
gcatattgagttcttgatcttggataaataggtaattaaccaagccttaaatgattctgattagtcgatgttcaattttagtcttcatacttaatctaat |
18985735 |
T |
|
| Q |
268 |
atgc |
271 |
Q |
| |
|
|||| |
|
|
| T |
18985734 |
atgc |
18985731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 68 - 271
Target Start/End: Original strand, 23919583 - 23919786
Alignment:
| Q |
68 |
tgaaaacttaagcaacttggttttatgtttctcttgaaactgatttgtgatttgtgatatttcagcactaaaaaccctttctcattagtagcaatgttgg |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23919583 |
tgaaaacttaagcaacttggttttatgtttcttttgaaactgatttgtgatttgtgatatttcagcactaaagaccctttctcattagtagcaatgttgg |
23919682 |
T |
|
| Q |
168 |
gcatattgagttcttgatcttggataaatatgtaattactcaaaccttgaatgattctaatttgtcgatgttcaattttagtcttcatacttaatctaat |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23919683 |
gcatattgagttcttgatcttggataaataggtaattaaccaagccttaaatgattctgattagtcgatgttcaattttagtcttcatacttaatctaat |
23919782 |
T |
|
| Q |
268 |
atgc |
271 |
Q |
| |
|
|||| |
|
|
| T |
23919783 |
atgc |
23919786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University