View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8501_low_25 (Length: 265)
Name: NF8501_low_25
Description: NF8501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8501_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 5436334 - 5436563
Alignment:
| Q |
18 |
catcaacccctcagcagtgaaatcctctaactgaacctctagattagtatgcttagcccacattgatattttctgaccatcacccaacctcactctcctg |
117 |
Q |
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| T |
5436334 |
catcaacccctcagcagtgaaatcctctaactgtacctctagattagtatgcttagcccacattgatattttctgaccatcacccaacctcactctcctg |
5436433 |
T |
|
| Q |
118 |
gcttagtatggaccgacccttacacccaacatcgctgacacttgaggcaaaatcgaagttgtggtttgtaccaaagtcgacctaaatcacaattcgtact |
217 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||| ||||| |
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| T |
5436434 |
gcttagtatgacccgacccttacacccaacatcgctgacacttgaggcaaaatcgaagttgtggtttgcaccaatgtcgaccaaaatcacaattggtact |
5436533 |
T |
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| Q |
218 |
cccttcaaacaccccactagttgtagtgtt |
247 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
5436534 |
cccttcaaacaccccactagttgtagtgtt |
5436563 |
T |
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