View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8501_low_28 (Length: 258)
Name: NF8501_low_28
Description: NF8501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8501_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 36027278 - 36027449
Alignment:
| Q |
18 |
aatgtggtgtggtgattttagttggtaaaagatatatctctgcacctctcatgaccagcgatattagtgcgtccaatcttaccctactcagatgatatct |
117 |
Q |
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| T |
36027278 |
aatgtggtgtggtgattttagttggtaaaagatatatctctgcacctctcatgaccagcgatattagtgcgtccaatcttaccctacccagatgatatct |
36027377 |
T |
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| Q |
118 |
cttatttatcatatcatccctgtctaatttcagcaatgagtttgataaatatattattgtttgaaaacagtc |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36027378 |
cttatttatcatatcatccctgtctaatttcagcaatgagtttgataaatatattattgtttgaaaacagtc |
36027449 |
T |
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Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 16931966 - 16931801
Alignment:
| Q |
18 |
aatgtggtgtggtgattttagttggtaaaagatatatctctgcacctctcatgaccagcgatattagtgcgtccaatctta-ccctactcagatgatatc |
116 |
Q |
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||||||||||| |||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||| || |
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| T |
16931966 |
aatgtggtgtgatgattttagttgtttaaagatat--ctctgcacctctcatgaccagcgatattagtgcgtccaatcttacccctaccccgatgatttc |
16931869 |
T |
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| Q |
117 |
tcttatttatcatatcatccctgtctaatttcagcaatgagtttgataaatatattattgtttgaaaac |
185 |
Q |
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|| || |||||||||||||||||||||| |||| | |||||||||||||||||| |||||||||||||| |
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| T |
16931868 |
tcataattatcatatcatccctgtctaa-ttcaacgatgagtttgataaatataatattgtttgaaaac |
16931801 |
T |
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