View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8501_low_29 (Length: 257)

Name: NF8501_low_29
Description: NF8501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8501_low_29
NF8501_low_29
[»] scaffold0329 (2 HSPs)
scaffold0329 (19-247)||(7302-7525)
scaffold0329 (184-241)||(7525-7582)
[»] chr8 (32 HSPs)
chr8 (111-196)||(18200674-18200759)
chr8 (116-206)||(3347494-3347584)
chr8 (120-193)||(10029206-10029279)
chr8 (118-219)||(33621408-33621509)
chr8 (111-222)||(41726931-41727042)
chr8 (116-189)||(32881153-32881226)
chr8 (116-193)||(44648934-44649011)
chr8 (111-212)||(11150957-11151058)
chr8 (111-191)||(20542422-20542502)
chr8 (116-222)||(3137440-3137546)
chr8 (111-193)||(18045318-18045400)
chr8 (116-200)||(17720167-17720251)
chr8 (121-169)||(25250345-25250393)
chr8 (118-193)||(40489892-40489966)
chr8 (116-194)||(35901411-35901489)
chr8 (111-169)||(37561519-37561577)
chr8 (111-197)||(43917622-43917708)
chr8 (116-193)||(600412-600489)
chr8 (111-200)||(2768550-2768639)
chr8 (116-189)||(6270150-6270222)
chr8 (120-169)||(12981605-12981654)
chr8 (117-169)||(12987661-12987713)
chr8 (121-169)||(30076211-30076259)
chr8 (111-166)||(600524-600579)
chr8 (126-193)||(4989745-4989812)
chr8 (118-165)||(34678231-34678278)
chr8 (127-169)||(12201843-12201885)
chr8 (127-169)||(12446271-12446313)
chr8 (116-191)||(23425261-23425340)
chr8 (116-193)||(27506944-27507019)
chr8 (120-170)||(44947391-44947441)
chr8 (136-193)||(40604241-40604298)
[»] chr2 (27 HSPs)
chr2 (116-223)||(1004741-1004847)
chr2 (116-189)||(23453385-23453458)
chr2 (116-191)||(4978750-4978825)
chr2 (116-166)||(4996683-4996733)
chr2 (111-191)||(13738393-13738473)
chr2 (118-190)||(32909404-32909476)
chr2 (116-194)||(40346748-40346826)
chr2 (116-191)||(18717890-18717965)
chr2 (111-189)||(4186407-4186485)
chr2 (116-166)||(28331277-28331327)
chr2 (111-159)||(6315922-6315970)
chr2 (111-189)||(14953059-14953138)
chr2 (111-193)||(3201134-3201216)
chr2 (116-173)||(481454-481511)
chr2 (111-188)||(31904224-31904301)
chr2 (117-173)||(43131775-43131831)
chr2 (118-169)||(7141156-7141207)
chr2 (116-191)||(40574141-40574216)
chr2 (111-165)||(1870518-1870572)
chr2 (145-195)||(7669198-7669248)
chr2 (111-173)||(29526317-29526379)
chr2 (116-198)||(42551954-42552035)
chr2 (118-222)||(3689586-3689688)
chr2 (116-173)||(5444508-5444565)
chr2 (120-169)||(34334914-34334963)
chr2 (120-164)||(8580556-8580600)
chr2 (117-169)||(19050011-19050063)
[»] chr3 (24 HSPs)
chr3 (111-193)||(44698253-44698335)
chr3 (116-222)||(6785761-6785867)
chr3 (111-188)||(25958060-25958137)
chr3 (116-169)||(29032452-29032505)
chr3 (111-193)||(4020133-4020215)
chr3 (116-182)||(55446772-55446838)
chr3 (116-193)||(635701-635778)
chr3 (111-191)||(49261815-49261895)
chr3 (117-194)||(8326178-8326255)
chr3 (111-188)||(11676737-11676814)
chr3 (111-183)||(54801336-54801408)
chr3 (116-158)||(4128724-4128766)
chr3 (111-169)||(50958895-50958953)
chr3 (116-173)||(25319503-25319560)
chr3 (120-169)||(28709586-28709635)
chr3 (121-169)||(25363361-25363409)
chr3 (120-188)||(34145906-34145974)
chr3 (119-169)||(33051568-33051618)
chr3 (119-193)||(38359090-38359164)
chr3 (120-169)||(1711944-1711993)
chr3 (118-222)||(42437683-42437785)
chr3 (121-166)||(48138103-48138148)
chr3 (116-169)||(48338853-48338906)
chr3 (125-161)||(3215090-3215126)
[»] chr4 (31 HSPs)
chr4 (119-211)||(22611875-22611967)
chr4 (111-194)||(12076423-12076506)
chr4 (116-189)||(12094998-12095071)
chr4 (116-193)||(27284112-27284189)
chr4 (116-173)||(31861444-31861501)
chr4 (118-169)||(44190261-44190312)
chr4 (116-166)||(2824839-2824889)
chr4 (118-216)||(16341075-16341173)
chr4 (120-222)||(27133593-27133695)
chr4 (116-169)||(2565431-2565484)
chr4 (116-161)||(39810731-39810776)
chr4 (118-169)||(13715584-13715634)
chr4 (111-182)||(42595191-42595262)
chr4 (116-198)||(22019643-22019725)
chr4 (116-194)||(28176816-28176893)
chr4 (116-173)||(7437845-7437902)
chr4 (120-189)||(13967889-13967958)
chr4 (116-157)||(19480577-19480618)
chr4 (116-193)||(31089781-31089857)
chr4 (118-194)||(20775114-20775190)
chr4 (117-193)||(31991454-31991530)
chr4 (118-173)||(41142310-41142365)
chr4 (116-159)||(44639908-44639951)
chr4 (119-169)||(28740328-28740378)
chr4 (116-194)||(45921334-45921412)
chr4 (117-174)||(32325065-32325122)
chr4 (118-191)||(32543980-32544052)
chr4 (116-173)||(37183078-37183135)
chr4 (111-188)||(43970047-43970124)
chr4 (117-169)||(21755916-21755968)
chr4 (133-173)||(31089532-31089572)
[»] chr5 (17 HSPs)
chr5 (116-199)||(30840588-30840671)
chr5 (116-200)||(11815951-11816035)
chr5 (118-191)||(30293821-30293894)
chr5 (116-173)||(41645072-41645129)
chr5 (116-194)||(36482091-36482169)
chr5 (116-202)||(14044669-14044753)
chr5 (111-172)||(2089133-2089194)
chr5 (116-169)||(18242479-18242532)
chr5 (116-193)||(22294024-22294101)
chr5 (116-187)||(27544629-27544700)
chr5 (122-191)||(1920744-1920813)
chr5 (145-193)||(34346951-34346999)
chr5 (125-200)||(15139159-15139234)
chr5 (127-169)||(8151815-8151857)
chr5 (119-169)||(27365991-27366041)
chr5 (120-173)||(3360693-3360746)
chr5 (118-222)||(12036275-12036379)
[»] chr1 (19 HSPs)
chr1 (116-221)||(8001715-8001820)
chr1 (116-228)||(27688519-27688631)
chr1 (118-193)||(5069538-5069613)
chr1 (116-223)||(46295837-46295944)
chr1 (116-193)||(26829532-26829609)
chr1 (116-187)||(10226464-10226535)
chr1 (111-169)||(33148151-33148209)
chr1 (145-193)||(39993447-39993495)
chr1 (111-189)||(13969099-13969177)
chr1 (120-193)||(17169266-17169339)
chr1 (118-169)||(37494213-37494264)
chr1 (131-169)||(32187108-32187146)
chr1 (119-173)||(37597148-37597202)
chr1 (111-193)||(40699285-40699367)
chr1 (117-173)||(39238872-39238928)
chr1 (120-168)||(50015796-50015844)
chr1 (117-161)||(38169094-38169138)
chr1 (120-156)||(38597524-38597560)
chr1 (125-173)||(52762318-52762366)
[»] chr7 (21 HSPs)
chr7 (111-223)||(8896564-8896676)
chr7 (116-191)||(19677035-19677110)
chr7 (130-222)||(43118860-43118952)
chr7 (116-170)||(12810166-12810220)
chr7 (116-169)||(16979982-16980035)
chr7 (116-191)||(16685772-16685848)
chr7 (116-191)||(17660008-17660084)
chr7 (116-196)||(42888343-42888423)
chr7 (111-195)||(43626382-43626466)
chr7 (118-156)||(23080658-23080696)
chr7 (131-169)||(31249568-31249606)
chr7 (120-173)||(8746180-8746233)
chr7 (116-193)||(23142649-23142725)
chr7 (116-186)||(30028004-30028076)
chr7 (116-169)||(34993148-34993201)
chr7 (145-193)||(34993094-34993142)
chr7 (118-173)||(18037866-18037921)
chr7 (118-173)||(31850764-31850819)
chr7 (116-169)||(37928340-37928393)
chr7 (120-200)||(18220975-18221055)
chr7 (117-173)||(33194763-33194819)
[»] scaffold0079 (1 HSPs)
scaffold0079 (118-216)||(51688-51786)
[»] chr6 (13 HSPs)
chr6 (120-222)||(2470395-2470497)
chr6 (116-194)||(33121306-33121384)
chr6 (116-189)||(32134086-32134159)
chr6 (120-166)||(2911490-2911536)
chr6 (116-170)||(17453992-17454046)
chr6 (116-194)||(19320266-19320344)
chr6 (118-167)||(18493285-18493334)
chr6 (118-173)||(17345858-17345913)
chr6 (116-169)||(19659635-19659687)
chr6 (133-193)||(227392-227452)
chr6 (125-169)||(2613372-2613416)
chr6 (117-169)||(10008234-10008286)
chr6 (120-164)||(17835001-17835045)
[»] scaffold0283 (1 HSPs)
scaffold0283 (120-173)||(3369-3422)
[»] scaffold0036 (1 HSPs)
scaffold0036 (120-173)||(36576-36629)
[»] scaffold0002 (1 HSPs)
scaffold0002 (116-193)||(120709-120786)
[»] scaffold0204 (1 HSPs)
scaffold0204 (120-200)||(15355-15435)


Alignment Details
Target: scaffold0329 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 7302 - 7525
Alignment:
Q  19 gtgctgggaggttatttgttttgtggtaatatatttttatgaagaaagataaccaatgttccaaggacattgattaagcatctgaaataagtaaaactgt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||| |||| ||| | |||||||||||| |||    
T  7302 gtgctgggaggttatttgttttgtggtaatatatttttatgaagaaagataaccagtgttccaagggtattggttaaacatttaaaataagtaaaattgt 7401  T
Q  119 gtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccattatcctgatggtaccggttaacaaaa 218  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||| ||| |||| ||||||||||||||||||||||||||||    |||||||    
T  7402 gtaatcattatttgatcaaaagtaatatcttatattttcaagac-aaatttctattcgtaaatttcttaaccattatcctgatggtacc----aacaaaa 7496  T
Q  219 ccctatttttattttggacttatcaacac 247  Q
    |||||||||||||||||||||||||||||    
T  7497 ccctatttttattttggacttatcaacac 7525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 7525 - 7582
Alignment:
Q  184 cttaaccattatcctgatggtaccggttaacaaaaccctatttttattttggacttat 241  Q
    |||||| |||||| ||| ||||| |||||||||||||||||||||| |||||||||||    
T  7525 cttaactattatcttgagggtactggttaacaaaaccctatttttactttggacttat 7582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 111 - 196
Target Start/End: Complemental strand, 18200759 - 18200674
Alignment:
Q  111 aaaactgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccattatc 196  Q
    |||| |||||||||||||||| ||||||||||| || ||||||||| ||||||||||||||||  |||||||||||||||||||||    
T  18200759 aaaattgtgtaatcattacttaatcaaaagtaacatgttatatttttaagacaaaatttttatttgtagatttcttaaccattatc 18200674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 116 - 206
Target Start/End: Complemental strand, 3347584 - 3347494
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccattatcctgatggtac 206  Q
    |||||||| ||||||| || |||||||| |||||||||||||||||||||||||||||  |||||||||||||||||| || ||| |||||    
T  3347584 tgtgtaattattactttattaaaagtaacatcttatattttcaagacaaaatttttatttgtagatttcttaaccattgtcatgagggtac 3347494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 10029206 - 10029279
Alignment:
Q  120 taatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccatt 193  Q
    |||||||||||||||||||||||| ||||||||||| ||||| |||||||||||  ||||||||||||||||||    
T  10029206 taatcattacttgatcaaaagtaacatcttatatttccaagataaaatttttatttgtagatttcttaaccatt 10029279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 118 - 219
Target Start/End: Original strand, 33621408 - 33621509
Alignment:
Q  118 tgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccattatcctgatggtaccggttaacaaa 217  Q
    |||||| ||||||||||||||||||| || ||||||||| ||||||||||||||||  ||||||| |||||  |||||||||| || |||||||| ||||    
T  33621408 tgtaataattacttgatcaaaagtaaaattttatatttttaagacaaaatttttatttgtagattccttaattattatcctgaaggcaccggttagcaaa 33621507  T
Q  218 ac 219  Q
    ||    
T  33621508 ac 33621509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 111 - 222
Target Start/End: Original strand, 41726931 - 41727042
Alignment:
Q  111 aaaactgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccattatcctgatggtaccggt 210  Q
    |||||| |||||||||||||| || |||| ||| || |||||||| |||||||||||||||||  ||||||| ||||||||||| ||||| ||||| |||    
T  41726931 aaaactatgtaatcattactttataaaaaataacattttatatttccaagacaaaatttttatttgtagattccttaaccattaacctgagggtactggt 41727030  T
Q  211 taacaaaaccct 222  Q
    || || ||||||    
T  41727031 tagcataaccct 41727042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 32881153 - 32881226
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaac 189  Q
    ||||||||||| ||||||| |||| |||||||||||||||| ||||||||||||||||  ||||||||||||||    
T  32881153 tgtgtaatcataacttgataaaaaataatatcttatatttttaagacaaaatttttatttgtagatttcttaac 32881226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 193
Target Start/End: Complemental strand, 44649011 - 44648934
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccatt 193  Q
    |||||||||||||||| ||||||||||| || |||||||||||||||||||||| |||  ||||||| ||||||||||    
T  44649011 tgtgtaatcattactttatcaaaagtaacattttatattttcaagacaaaatttctatttgtagattccttaaccatt 44648934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 111 - 212
Target Start/End: Original strand, 11150957 - 11151058
Alignment:
Q  111 aaaactgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccattatcctgatggtaccggt 210  Q
    |||| ||||||||||||| |||||||||||||| |||||||||||  ||||||||| ||||||  ||||||| ||||| ||||  ||||| || ||||||    
T  11150957 aaaattgtgtaatcattatttgatcaaaagtaacatcttatatttctaagacaaaaattttatttgtagattccttaatcattgccctgagggcaccggt 11151056  T
Q  211 ta 212  Q
    ||    
T  11151057 ta 11151058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 191
Target Start/End: Original strand, 20542422 - 20542502
Alignment:
Q  111 aaaactgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaacca 191  Q
    |||| |||||||||||||||| ||||||||||| ||||||||||| |||||| |||||| |||  ||||||| ||||||||    
T  20542422 aaaagtgtgtaatcattacttaatcaaaagtaacatcttatatttccaagacgaaatttctatttgtagattccttaacca 20542502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 222
Target Start/End: Original strand, 3137440 - 3137546
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccattatcctgatggtaccggttaaca 215  Q
    |||||||| ||||||||||||||||||| |||||| |||||||||||||||||| |||   |  ||||||||||||||  ||||| || || ||||| ||    
T  3137440 tgtgtaataattacttgatcaaaagtaacatcttacattttcaagacaaaatttctatttctgaatttcttaaccattgccctgagggcactggttagca 3137539  T
Q  216 aaaccct 222  Q
    | |||||    
T  3137540 agaccct 3137546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 193
Target Start/End: Original strand, 18045318 - 18045400
Alignment:
Q  111 aaaactgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccatt 193  Q
    |||| |||||||| ||||| ||| ||||||||| || |||||||||||||||||||||||||   |||||||  |||||||||    
T  18045318 aaaattgtgtaattattacatgaacaaaagtaacatattatattttcaagacaaaatttttagttgtagattctttaaccatt 18045400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 17720251 - 17720167
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccattatcctga 200  Q
    |||||||||||||| ||||||||| ||| ||||||||||||||||| || |||| |||   ||||||  ||||||| ||||||||    
T  17720251 tgtgtaatcattacatgatcaaaaataacatcttatattttcaagaaaatatttctatttatagattctttaaccaatatcctga 17720167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 25250345 - 25250393
Alignment:
Q  121 aatcattacttgatcaaaagtaatatcttatattttcaagacaaaattt 169  Q
    ||||||||||||||||||| ||| || ||||||||||||||||||||||    
T  25250345 aatcattacttgatcaaaaataacatattatattttcaagacaaaattt 25250393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 193
Target Start/End: Original strand, 40489892 - 40489966
Alignment:
Q  118 tgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccatt 193  Q
    |||||||||||||| ||||| ||||| || |||||||| |||| ||||||||||||  ||||||| ||||||||||    
T  40489892 tgtaatcattactttatcaatagtaacattttatatttacaaggcaaaatttttat-tgtagattccttaaccatt 40489966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 194
Target Start/End: Complemental strand, 35901489 - 35901411
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccatta 194  Q
    |||| |||||||| || || |||||||| |||||| |||||||| ||||||||| |||  ||||||| |||||||||||    
T  35901489 tgtgcaatcattatttaattaaaagtaacatcttacattttcaaaacaaaatttctatttgtagattccttaaccatta 35901411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 169
Target Start/End: Complemental strand, 37561577 - 37561519
Alignment:
Q  111 aaaactgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaattt 169  Q
    |||| ||||| || ||||||||||||||||||| ||||||||||||||| | |||||||    
T  37561577 aaaattgtgtgattattacttgatcaaaagtaaaatcttatattttcaaaataaaattt 37561519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 43917622 - 43917708
Alignment:
Q  111 aaaactgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccattatcc 197  Q
    |||| |||||||| |||| ||||| ||||||||   |||||||||||||||||||| ||||||  |||||||  |||| ||||||||    
T  43917622 aaaattgtgtaattattatttgattaaaagtaacgccttatattttcaagacaaaaattttatttgtagattctttaatcattatcc 43917708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 193
Target Start/End: Original strand, 600412 - 600489
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccatt 193  Q
    |||| ||||||||||| ||||||||||| ||||||||||| |||| |||||  |||||  ||||||| ||||| ||||    
T  600412 tgtgcaatcattactttatcaaaagtaacatcttatatttccaagccaaaaaatttatttgtagattccttaatcatt 600489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 200
Target Start/End: Complemental strand, 2768639 - 2768550
Alignment:
Q  111 aaaactgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccattatcctga 200  Q
    |||| |||| |||||||| || || |||| ||| || |||||||| |||||||||||||||||  ||||| | |||||||| ||||||||    
T  2768639 aaaattgtgcaatcattatttaattaaaactaacattttatatttccaagacaaaatttttatttgtagaatccttaaccaatatcctga 2768550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 6270222 - 6270150
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaac 189  Q
    |||||||||||||||| ||||||| ||| | ||||||||| ||||||||||||||||   ||||||| ||||||    
T  6270222 tgtgtaatcattactttatcaaaa-taacaccttatatttccaagacaaaatttttaattgtagattccttaac 6270150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 12981605 - 12981654
Alignment:
Q  120 taatcattacttgatcaaaagtaatatcttatattttcaagacaaaattt 169  Q
    ||||||||||||| ||||| |||| |||||| ||||||||||||||||||    
T  12981605 taatcattacttggtcaaatgtaacatcttacattttcaagacaaaattt 12981654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 12987713 - 12987661
Alignment:
Q  117 gtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaattt 169  Q
    |||||||||||| || ||||||||||| | ||||| |||||||||||||||||    
T  12987713 gtgtaatcattatttaatcaaaagtaaaaacttatgttttcaagacaaaattt 12987661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 30076211 - 30076259
Alignment:
Q  121 aatcattacttgatcaaaagtaatatcttatattttcaagacaaaattt 169  Q
    |||||||| |||||||||||||| |||||||||||| || |||||||||    
T  30076211 aatcattatttgatcaaaagtaacatcttatatttttaaaacaaaattt 30076259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 600524 - 600579
Alignment:
Q  111 aaaactgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaa 166  Q
    |||| |||| ||||||||||| ||||||||||| ||| ||||||| ||||||||||    
T  600524 aaaattgtgcaatcattactttatcaaaagtaacatcctatatttccaagacaaaa 600579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 193
Target Start/End: Original strand, 4989745 - 4989812
Alignment:
Q  126 ttacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccatt 193  Q
    |||||||||||||| | | | ||||||||||||||||||| |||||||   ||| |||||||||||||    
T  4989745 ttacttgatcaaaaatcaaaacttatattttcaagacaaattttttatttatagttttcttaaccatt 4989812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 165
Target Start/End: Complemental strand, 34678278 - 34678231
Alignment:
Q  118 tgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaa 165  Q
    |||||| ||||||||||||||||||| || ||| ||||||||||||||    
T  34678278 tgtaattattacttgatcaaaagtaacattttacattttcaagacaaa 34678231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 12201843 - 12201885
Alignment:
Q  127 tacttgatcaaaagtaatatcttatattttcaagacaaaattt 169  Q
    ||||||||||||||||| | ||||||||| |||||||||||||    
T  12201843 tacttgatcaaaagtaacagcttatatttccaagacaaaattt 12201885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 12446271 - 12446313
Alignment:
Q  127 tacttgatcaaaagtaatatcttatattttcaagacaaaattt 169  Q
    ||||||||||||||||| | ||||||||| |||||||||||||    
T  12446271 tacttgatcaaaagtaacagcttatatttccaagacaaaattt 12446313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 23425340 - 23425261
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaa----tatcttatattttcaagacaaaatttttatccgtagatttcttaacca 191  Q
    ||||||||||||| |||||||||| |||    |||||||||||||  |||||||||||||||   | |||||||||||||    
T  23425340 tgtgtaatcattatttgatcaaaaataacatttatcttatatttttgagacaaaatttttatttatggatttcttaacca 23425261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 193
Target Start/End: Complemental strand, 27507019 - 27506944
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccatt 193  Q
    |||||||| |||| || ||||||||||||||||||||||| ||| ||  |||||||||  |||||||  |||||||||    
T  27507019 tgtgtaattattattttatcaaaagtaatatcttatatttccaaaac--aatttttatttgtagattctttaaccatt 27506944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 44947391 - 44947441
Alignment:
Q  120 taatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttt 170  Q
    |||||| ||||| ||||||||||| || |||||||||||||||||| ||||    
T  44947391 taatcaatactttatcaaaagtaacattttatattttcaagacaaattttt 44947441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 40604298 - 40604241
Alignment:
Q  136 aaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccatt 193  Q
    |||| |||| ||||| |||||||| ||||||||| |||  ||||||||||||||||||    
T  40604298 aaaaataatgtcttacattttcaaaacaaaatttatatttgtagatttcttaaccatt 40604241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 223
Target Start/End: Complemental strand, 1004847 - 1004741
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccattatcctgatggtaccggttaaca 215  Q
    ||||||||||| | || |||||||||||||| |||||||||||||||||||||| |||  ||||||| ||||||||||| ||||| ||||| ||||| ||    
T  1004847 tgtgtaatcataattt-atcaaaagtaatattttatattttcaagacaaaatttctatttgtagattccttaaccattaccctgagggtactggttagca 1004749  T
Q  216 aaacccta 223  Q
    ||||||||    
T  1004748 aaacccta 1004741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 23453385 - 23453458
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaac 189  Q
    ||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||  ||||||| ||||||    
T  23453385 tgtgtaatctttatttgatcaaaagtaacatcttatattttcaagacaaaatttttatttgtagattccttaac 23453458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 4978825 - 4978750
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaacca 191  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| || |||   ||||||| |||||||    
T  4978825 tgtgtaatcattacttgatcaaaagtaacatcttatattttcaagacaaaacttctattaatagattttttaacca 4978750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 4996733 - 4996683
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaa 166  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4996733 tgtgtaatcattacttgatcaaaagtaacatcttatattttcaagacaaaa 4996683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 191
Target Start/End: Complemental strand, 13738473 - 13738393
Alignment:
Q  111 aaaactgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaacca 191  Q
    |||| |||||||||||||||| |||| |||||| ||||||||||||||| |||||||||||||   |||||| ||||||||    
T  13738473 aaaattgtgtaatcattactttatcagaagtaacatcttatattttcaaaacaaaatttttatttatagattccttaacca 13738393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 32909476 - 32909404
Alignment:
Q  118 tgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaacc 190  Q
    |||||| ||||||| ||||||||||||||||||||||| ||||||||||||| |||  ||| |||||||||||    
T  32909476 tgtaataattactttatcaaaagtaatatcttatatttccaagacaaaatttatatttgtatatttcttaacc 32909404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 40346748 - 40346826
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccatta 194  Q
    |||| |||||||| |||||||||| ||| ||||||||||||||| ||||||||| |||  ||||||| |||||||||||    
T  40346748 tgtgcaatcattatttgatcaaaaataacatcttatattttcaatacaaaatttctatatgtagattccttaaccatta 40346826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 18717890 - 18717965
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaacca 191  Q
    |||||||||||||||||||||||||||| |||||||||||| || | ||||||| |||  ||| ||| ||||||||    
T  18717890 tgtgtaatcattacttgatcaaaagtaacatcttatatttttaaaataaaatttctatttgtaaattccttaacca 18717965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 4186407 - 4186485
Alignment:
Q  111 aaaactgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaac 189  Q
    |||| |||||||| |||||| ||||||| |||| || |||||||||||| | |||||||||||  ||||||||||||||    
T  4186407 aaaattgtgtaattattactagatcaaatgtaacattttatattttcaaaataaaatttttatttgtagatttcttaac 4186485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 28331327 - 28331277
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaa 166  Q
    |||||||||||||||||||||||| |||||| |||||||| ||||||||||    
T  28331327 tgtgtaatcattacttgatcaaaaataatattttatatttccaagacaaaa 28331277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 6315922 - 6315970
Alignment:
Q  111 aaaactgtgtaatcattacttgatcaaaagtaatatcttatattttcaa 159  Q
    |||| |||||||||||||||||||||||| ||| |||||||||||||||    
T  6315922 aaaattgtgtaatcattacttgatcaaaaataacatcttatattttcaa 6315970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 14953059 - 14953138
Alignment:
Q  111 aaaactgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaattttta-tccgtagatttcttaac 189  Q
    |||| ||| ||||||||||| |||||||| ||| || ||||||||| ||||||||||||||| | |||||||| ||||||    
T  14953059 aaaattgtctaatcattactcgatcaaaaataacattttatatttttaagacaaaatttttatttcgtagattccttaac 14953138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 193
Target Start/End: Complemental strand, 3201216 - 3201134
Alignment:
Q  111 aaaactgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccatt 193  Q
    |||| ||||||||||||| || |||||||||||||| | |||||||||||| |||| || ||   ||||||| ||||||||||    
T  3201216 aaaattgtgtaatcattagttaatcaaaagtaatatttcatattttcaagataaaacttctacatgtagattccttaaccatt 3201134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 481454 - 481511
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttat 173  Q
    |||||||| |||||||||||||| |||||| ||||| ||||||||||| || ||||||    
T  481454 tgtgtaattattacttgatcaaacgtaataacttatgttttcaagacacaacttttat 481511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 31904301 - 31904224
Alignment:
Q  111 aaaactgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaa 188  Q
    |||| ||||||||||||||||||| |||| ||| || ||||||||| |||| ||||| |||||  ||||| |||||||    
T  31904301 aaaattgtgtaatcattacttgattaaaaataacattttatatttttaagataaaatatttatttgtagaattcttaa 31904224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 43131831 - 43131775
Alignment:
Q  117 gtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttat 173  Q
    ||||||| ||||||||||||||||||  | |||| ||||| ||||||||||||||||    
T  43131831 gtgtaattattacttgatcaaaagtataaacttacatttttaagacaaaatttttat 43131775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 7141156 - 7141207
Alignment:
Q  118 tgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaattt 169  Q
    ||||||||||| ||| |||||||||| | ||||| |||||||||||||||||    
T  7141156 tgtaatcattatttggtcaaaagtaacaccttatgttttcaagacaaaattt 7141207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 40574216 - 40574141
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaacca 191  Q
    |||||||| ||||||  ||||||||| | || |||||||| ||||||||||||| |||  ||||||| ||||||||    
T  40574216 tgtgtaattattactctatcaaaagttacattttatatttccaagacaaaatttctatttgtagattccttaacca 40574141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 165
Target Start/End: Complemental strand, 1870572 - 1870518
Alignment:
Q  111 aaaactgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaa 165  Q
    |||| |||||||| ||||||| ||||||||| | | |||||||||||||||||||    
T  1870572 aaaaatgtgtaattattacttaatcaaaagtcaaagcttatattttcaagacaaa 1870518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 7669198 - 7669248
Alignment:
Q  145 atcttatattttcaagacaaaatttttatccgtagatttcttaaccattat 195  Q
    |||||||||||| ||||||||||||||||   || ||||||||||||||||    
T  7669198 atcttatatttttaagacaaaatttttatttttaaatttcttaaccattat 7669248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 173
Target Start/End: Complemental strand, 29526379 - 29526317
Alignment:
Q  111 aaaactgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttat 173  Q
    |||| |||||||||||||||| || |||| |||||| ||||||||| ||||  ||||||||||    
T  29526379 aaaattgtgtaatcattactttattaaaaataatattttatatttttaagattaaatttttat 29526317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 198
Target Start/End: Complemental strand, 42552035 - 42551954
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccattatcct 198  Q
    |||| |||| ||| ||||| |||| |||||| |||||| |||||||||||| ||||||  ||||||| |||||||||| ||||    
T  42552035 tgtgcaatcgttatttgataaaaaataatat-ttatatcttcaagacaaaaattttatttgtagattccttaaccattgtcct 42551954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 222
Target Start/End: Complemental strand, 3689688 - 3689586
Alignment:
Q  118 tgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccattatcctgatggtaccggttaacaaa 217  Q
    ||||||||||||  |||||||||||| |||||||||||  |||| ||||||| |||  ||||| | |||||||||| ||| || || || | |||||||     
T  3689688 tgtaatcattac--gatcaaaagtaacatcttatatttcaaagataaaatttctatttgtagaatccttaaccattgtcccgagggcactgattaacaag 3689591  T
Q  218 accct 222  Q
    |||||    
T  3689590 accct 3689586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 5444565 - 5444508
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttat 173  Q
    |||||| | ||||||| || |||||| | | |||||||||||||||||||||||||||    
T  5444565 tgtgtatttattacttaattaaaagtcaaaacttatattttcaagacaaaatttttat 5444508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 34334914 - 34334963
Alignment:
Q  120 taatcattacttgatcaaaagtaatatcttatattttcaagacaaaattt 169  Q
    |||||||||||| |||||||||| ||||||||||| | |||| |||||||    
T  34334914 taatcattacttaatcaaaagtattatcttatattctgaagataaaattt 34334963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 8580556 - 8580600
Alignment:
Q  120 taatcattacttgatcaaaagtaatatcttatattttcaagacaa 164  Q
    |||| ||||||| ||||||||||| ||||||||||| ||||||||    
T  8580556 taattattacttaatcaaaagtaacatcttatatttccaagacaa 8580600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 19050063 - 19050011
Alignment:
Q  117 gtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaattt 169  Q
    ||||||| ||||||||||||||| |||||| ||||||||  | ||||||||||    
T  19050063 gtgtaattattacttgatcaaaaataatattttatatttctatgacaaaattt 19050011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 111 - 193
Target Start/End: Original strand, 44698253 - 44698335
Alignment:
Q  111 aaaactgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccatt 193  Q
    |||| ||||||||||||| || ||||||||||| ||||||||||||||||||||||||| |||  ||||||||||||||||||    
T  44698253 aaaattgtgtaatcattattttatcaaaagtaacatcttatattttcaagacaaaatttctatttgtagatttcttaaccatt 44698335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 116 - 222
Target Start/End: Complemental strand, 6785867 - 6785761
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccattatcctgatggtaccggttaaca 215  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||| || |||  ||||| | ||||||||||  ||||| || || ||||| ||    
T  6785867 tgtgtaatcattacttgatcaaaagtaacattttatattttcaagacaaaaattctatttgtagaatccttaaccattgccctgagggcactggttagca 6785768  T
Q  216 aaaccct 222  Q
    | |||||    
T  6785767 ataccct 6785761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 25958137 - 25958060
Alignment:
Q  111 aaaactgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaa 188  Q
    |||| ||||||||| |||||| ||||||||||| |||||||||||| |||||||| |||||||  |||||||||||||    
T  25958137 aaaattgtgtaatcgttactttatcaaaagtaacatcttatatttttaagacaaattttttatatgtagatttcttaa 25958060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 29032452 - 29032505
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaattt 169  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  29032452 tgtgtaatcattacttgatcaaaagtaacatcttatatttttaagacaaaattt 29032505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 193
Target Start/End: Original strand, 4020133 - 4020215
Alignment:
Q  111 aaaactgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccatt 193  Q
    |||| |||||||| ||||||| ||||||| ||| || |||||||||||||||||||||| |||  ||||||| ||||||||||    
T  4020133 aaaattgtgtaataattacttaatcaaaattaacattttatattttcaagacaaaatttctatttgtagattccttaaccatt 4020215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 182
Target Start/End: Original strand, 55446772 - 55446838
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatt 182  Q
    |||||||||||||||| || |||||||| ||||||||||| |||||||||||||||||  |||||||    
T  55446772 tgtgtaatcattactttattaaaagtaacatcttatatttccaagacaaaatttttatttgtagatt 55446838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 193
Target Start/End: Complemental strand, 635778 - 635701
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccatt 193  Q
    ||||||||||||| || ||||||||||| ||||||| | ||||||||||||||| |||  ||||||| ||||||||||    
T  635778 tgtgtaatcattatttaatcaaaagtaacatcttatttattcaagacaaaatttctatttgtagattccttaaccatt 635701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 191
Target Start/End: Original strand, 49261815 - 49261895
Alignment:
Q  111 aaaactgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaacca 191  Q
    |||| |||||||| ||||||  ||||||||||| ||||||||||| ||||||||||||| |||  ||| ||||||||||||    
T  49261815 aaaattgtgtaattattactctatcaaaagtaacatcttatatttacaagacaaaatttctatttgtatatttcttaacca 49261895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 194
Target Start/End: Original strand, 8326178 - 8326255
Alignment:
Q  117 gtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccatta 194  Q
    ||||||||||| ||||||||||||||| || ||||||||| || ||||||||| |||  | |||||| ||||||||||    
T  8326178 gtgtaatcattgcttgatcaaaagtaacatattatatttttaaaacaaaatttctatttgaagatttattaaccatta 8326255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 11676814 - 11676737
Alignment:
Q  111 aaaactgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaa 188  Q
    |||| ||||| ||||||| ||||||||||||||  |||| ||||||||||||||||||| |||  ||||||| |||||    
T  11676814 aaaattgtgttatcattatttgatcaaaagtaacgtcttttattttcaagacaaaatttatatttgtagattccttaa 11676737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 54801408 - 54801336
Alignment:
Q  111 aaaactgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagattt 183  Q
    |||| |||||||| ||||||| | ||||||||| ||||||||||||||||| ||| |||||||  ||||||||    
T  54801408 aaaattgtgtaattattactttagcaaaagtaacatcttatattttcaagataaattttttatatgtagattt 54801336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 4128766 - 4128724
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttca 158  Q
    |||||||||||||||| ||||||| ||||||||||||||||||    
T  4128766 tgtgtaatcattactttatcaaaaataatatcttatattttca 4128724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 169
Target Start/End: Original strand, 50958895 - 50958953
Alignment:
Q  111 aaaactgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaattt 169  Q
    |||| |||||||||||| ||||||||||| ||| || |||||||| |||||||||||||    
T  50958895 aaaattgtgtaatcatttcttgatcaaaaataacatgttatatttccaagacaaaattt 50958953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 25319503 - 25319560
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttat 173  Q
    ||||||||||||| ||  |||||||||| || |||||||||||| |||||||||||||    
T  25319503 tgtgtaatcattatttagtcaaaagtaacattttatattttcaatacaaaatttttat 25319560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 169
Target Start/End: Complemental strand, 28709635 - 28709586
Alignment:
Q  120 taatcattacttgatcaaaagtaatatcttatattttcaagacaaaattt 169  Q
    ||||||||| |||||||||||||| || |||||||||||||| |||||||    
T  28709635 taatcattatttgatcaaaagtaacattttatattttcaagataaaattt 28709586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 25363361 - 25363409
Alignment:
Q  121 aatcattacttgatcaaaagtaatatcttatattttcaagacaaaattt 169  Q
    ||||||||||| ||||||| |||||||||||||||| || |||||||||    
T  25363361 aatcattacttaatcaaaaataatatcttatatttttaaaacaaaattt 25363409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 34145974 - 34145906
Alignment:
Q  120 taatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaa 188  Q
    |||| ||||||||||||||| ||| ||||||||||| ||| ||||||||| |||  ||| |||||||||    
T  34145974 taattattacttgatcaaaaataacatcttatatttccaacacaaaatttatattagtaaatttcttaa 34145906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 33051618 - 33051568
Alignment:
Q  119 gtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaattt 169  Q
    |||||||||||||||| |||| |||||| |||||||||||| | |||||||    
T  33051618 gtaatcattacttgataaaaaataatattttatattttcaaaataaaattt 33051568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 193
Target Start/End: Original strand, 38359090 - 38359164
Alignment:
Q  119 gtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccatt 193  Q
    |||||| |||||| ||||||| ||| |||||||||||  |||| |||||||||||   |||||| ||||||||||    
T  38359090 gtaatcgttactttatcaaaattaacatcttatatttctaagataaaatttttatttatagattccttaaccatt 38359164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 169
Target Start/End: Complemental strand, 1711993 - 1711944
Alignment:
Q  120 taatcattacttgatcaaaagtaatatcttatattttcaagacaaaattt 169  Q
    |||| |||||||  ||||| |||| |||||||||||||||||||||||||    
T  1711993 taattattacttagtcaaatgtaacatcttatattttcaagacaaaattt 1711944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 222
Target Start/End: Complemental strand, 42437785 - 42437683
Alignment:
Q  118 tgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccattatcctgatggtaccggttaacaaa 217  Q
    ||||||||||||  |||||||||||| |||||||| || ||||| ||||||| |||  ||||| | ||||||||||  ||||| || || ||||| |||     
T  42437785 tgtaatcattac--gatcaaaagtaacatcttataattccaagataaaatttctatttgtagaatccttaaccattgccctgagggcactggttatcaag 42437688  T
Q  218 accct 222  Q
    |||||    
T  42437687 accct 42437683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 166
Target Start/End: Original strand, 48138103 - 48138148
Alignment:
Q  121 aatcattacttgatcaaaagtaatatcttatattttcaagacaaaa 166  Q
    ||||||||||| ||||||| ||| || |||||||||||||||||||    
T  48138103 aatcattacttaatcaaaaataacatattatattttcaagacaaaa 48138148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 48338853 - 48338906
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaattt 169  Q
    |||||||| ||||||| ||||||| ||| ||||||||||| ||||| |||||||    
T  48338853 tgtgtaataattactttatcaaaaataacatcttatatttccaagataaaattt 48338906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 3215090 - 3215126
Alignment:
Q  125 attacttgatcaaaagtaatatcttatattttcaaga 161  Q
    |||||||||||||||| || |||||||||||||||||    
T  3215090 attacttgatcaaaagcaacatcttatattttcaaga 3215126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 22611967 - 22611875
Alignment:
Q  119 gtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccattatcctgatggtaccggtt 211  Q
    ||||||||||||| ||| ||||||| |||||||||||| |||||||||||| |||  ||||||||||||| ||||||||||| || |||||||    
T  22611967 gtaatcattactttatcgaaagtaacatcttatatttttaagacaaaatttatatttgtagatttcttaatcattatcctgaaggcaccggtt 22611875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 194
Target Start/End: Complemental strand, 12076506 - 12076423
Alignment:
Q  111 aaaactgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccatta 194  Q
    |||| ||||| |||||| ||||||||||| ||| |||||||||||||||||||||||||||||  | ||||| |||||||||||    
T  12076506 aaaattgtgtgatcattgcttgatcaaaattaacatcttatattttcaagacaaaatttttatttgaagattccttaaccatta 12076423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 12094998 - 12095071
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaac 189  Q
    |||||||||||||||| |||||||||||||||||||||||||||  |||||||| |||  ||||||| ||||||    
T  12094998 tgtgtaatcattactttatcaaaagtaatatcttatattttcaatgcaaaatttctatttgtagattccttaac 12095071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 193
Target Start/End: Original strand, 27284112 - 27284189
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccatt 193  Q
    |||| |||||||| |||||||||||||| ||||||||||| ||||||||||||| |||  ||||||| ||||||||||    
T  27284112 tgtgcaatcattatttgatcaaaagtaacatcttatatttccaagacaaaatttctatatgtagattccttaaccatt 27284189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 31861501 - 31861444
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttat 173  Q
    |||||||||||||||||||||||||||| ||||||||||| ||| | |||||||||||    
T  31861501 tgtgtaatcattacttgatcaaaagtaacatcttatatttccaaaataaaatttttat 31861444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 44190261 - 44190312
Alignment:
Q  118 tgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaattt 169  Q
    |||||| ||||||||||||||||||| ||||||||||||||||| |||||||    
T  44190261 tgtaattattacttgatcaaaagtaacatcttatattttcaagataaaattt 44190312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 2824889 - 2824839
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaa 166  Q
    |||||||||||||||||||||||||||| ||||||||||  ||||||||||    
T  2824889 tgtgtaatcattacttgatcaaaagtaacatcttatattcccaagacaaaa 2824839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 216
Target Start/End: Complemental strand, 16341173 - 16341075
Alignment:
Q  118 tgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccattatcctgatggtaccggttaacaa 216  Q
    |||||||||||||| ||||||||||| || ||||||||  ||||||||| ||||||  ||| ||| |||||||||| |||| | ||||  |||||||||    
T  16341173 tgtaatcattacttaatcaaaagtaacattttatatttcaaagacaaaaattttatttgtaaattccttaaccattgtcctaagggtaatggttaacaa 16341075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 222
Target Start/End: Original strand, 27133593 - 27133695
Alignment:
Q  120 taatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccattatcctgatggtaccggttaacaaaac 219  Q
    |||||||||||||| ||||| |||||||||||||||  |||||||| ||| |||  |  |||| |||||||||| |||||| ||||| ||||| ||| ||    
T  27133593 taatcattacttgaacaaaaataatatcttatatttcaaagacaaactttctatttggtgattccttaaccattgtcctgagggtactggttagcaagac 27133692  T
Q  220 cct 222  Q
    |||    
T  27133693 cct 27133695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 2565484 - 2565431
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaattt 169  Q
    |||||||||||||||||||||||||||| || |||| ||||||||| |||||||    
T  2565484 tgtgtaatcattacttgatcaaaagtaacattttatgttttcaagataaaattt 2565431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 161
Target Start/End: Complemental strand, 39810776 - 39810731
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaaga 161  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||    
T  39810776 tgtgtaattattacttgatcaaaagtaacatcttatattttcaaga 39810731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 169
Target Start/End: Complemental strand, 13715634 - 13715584
Alignment:
Q  118 tgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaattt 169  Q
    |||||||||||||||||||||| ||||||||||||||| ||| |||||||||    
T  13715634 tgtaatcattacttgatcaaaa-taatatcttatatttccaaaacaaaattt 13715584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 42595262 - 42595191
Alignment:
Q  111 aaaactgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatt 182  Q
    |||| |||||||||||||||| ||||||||||| || |||||||||||| ||||| ||| ||| | ||||||    
T  42595262 aaaattgtgtaatcattactttatcaaaagtaacattttatattttcaaaacaaattttatattcatagatt 42595191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 198
Target Start/End: Original strand, 22019643 - 22019725
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccattatcct 198  Q
    |||||||||||||||| ||  ||| ||| |||||||||||| ||||||||||||| ||   |||||| |||||||| ||||||    
T  22019643 tgtgtaatcattacttaatagaaaataacatcttatattttaaagacaaaattttcatttatagattccttaaccaatatcct 22019725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 28176816 - 28176893
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccatta 194  Q
    ||||||||||||| || ||||||| |||||||||||||||  |||| ||||||| |||  ||| |||||||||||||||    
T  28176816 tgtgtaatcattattttatcaaaa-taatatcttatatttctaagataaaatttctatttgtaaatttcttaaccatta 28176893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 7437902 - 7437845
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttat 173  Q
    ||||||||||| ||||| |||||||||| ||||||||||| ||||||| | |||||||    
T  7437902 tgtgtaatcatgacttgttcaaaagtaacatcttatatttccaagacacattttttat 7437845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 13967889 - 13967958
Alignment:
Q  120 taatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaac 189  Q
    ||||||||||||||| |||| ||| ||||||||||  ||||||||||||| |||  ||||||| ||||||    
T  13967889 taatcattacttgataaaaaataacatcttatattaccaagacaaaatttctatttgtagattccttaac 13967958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 19480577 - 19480618
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttc 157  Q
    |||||||||||||||| ||||||||||| |||||||||||||    
T  19480577 tgtgtaatcattactttatcaaaagtaacatcttatattttc 19480618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 193
Target Start/End: Complemental strand, 31089857 - 31089781
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccatt 193  Q
    |||||||||||||||| ||||||||||| || |||||||| | ||||||||||| |||  ||||||| ||||| ||||    
T  31089857 tgtgtaatcattactttatcaaaagtaacat-ttatatttcctagacaaaatttctattggtagattccttaatcatt 31089781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 20775114 - 20775190
Alignment:
Q  118 tgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccatta 194  Q
    |||||| |||| |||||||||| |||||||||||||||  |||||||| |||||||   ||||||  ||||||||||    
T  20775114 tgtaataattatttgatcaaaaataatatcttatatttctaagacaaattttttatttatagattcattaaccatta 20775190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 31991530 - 31991454
Alignment:
Q  117 gtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccatt 193  Q
    ||||||| ||||||| ||||||| ||| |||||||||||||||  |||||||||||   || |||| ||||||||||    
T  31991530 gtgtaattattactttatcaaaaataacatcttatattttcaaagcaaaatttttaattgtggattccttaaccatt 31991454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 41142365 - 41142310
Alignment:
Q  118 tgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttat 173  Q
    |||||| |||| || ||||||||||| | ||||| |||||||||||||||||||||    
T  41142365 tgtaattattatttaatcaaaagtaagaccttattttttcaagacaaaatttttat 41142310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 159
Target Start/End: Original strand, 44639908 - 44639951
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaa 159  Q
    |||||||||||||||| ||||||||||| |||||||||| ||||    
T  44639908 tgtgtaatcattacttaatcaaaagtaacatcttatattctcaa 44639951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 169
Target Start/End: Original strand, 28740328 - 28740378
Alignment:
Q  119 gtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaattt 169  Q
    ||||||||||||| ||||||| ||  ||||||||||||||||| |||||||    
T  28740328 gtaatcattactttatcaaaaatatcatcttatattttcaagataaaattt 28740378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 194
Target Start/End: Complemental strand, 45921412 - 45921334
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccatta 194  Q
    |||||||| ||||||| ||||| ||| | | ||||||||||||||||||| ||| |||   |||||| |||||||||||    
T  45921412 tgtgtaattattacttaatcaatagtcaaaacttatattttcaagacaaattttctatttatagattccttaaccatta 45921334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 32325065 - 32325122
Alignment:
Q  117 gtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatc 174  Q
    ||||||| ||||||| ||||||||| | |  |||||||||||||||||| ||||||||    
T  32325065 gtgtaattattacttaatcaaaagtcaaaaattatattttcaagacaaattttttatc 32325122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 191
Target Start/End: Complemental strand, 32544052 - 32543980
Alignment:
Q  118 tgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaacca 191  Q
    |||||||||||| ||||||||||||| || ||||||||||  |||||| |||||||   |||||| ||||||||    
T  32544052 tgtaatcattacctgatcaaaagtaaaat-ttatattttctcgacaaattttttatttatagattccttaacca 32543980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 37183078 - 37183135
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttat 173  Q
    |||||||||||||||||||||||| ||| || ||||||||  |||| || ||||||||    
T  37183078 tgtgtaatcattacttgatcaaaaataacatattatatttataagataagatttttat 37183135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 43970124 - 43970047
Alignment:
Q  111 aaaactgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaa 188  Q
    |||| |||||||| ||||| | || |||||||| |||||||||||| |||| ||||||| ||| |||| ||| |||||    
T  43970124 aaaattgtgtaattattacataattaaaagtaacatcttatatttttaagataaaatttatattcgtatattccttaa 43970047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 21755916 - 21755968
Alignment:
Q  117 gtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaattt 169  Q
    |||||||||||| || || |||| |||||| |||||||||| |||||||||||    
T  21755916 gtgtaatcattatttaataaaaaataatattttatattttcgagacaaaattt 21755968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 31089572 - 31089532
Alignment:
Q  133 atcaaaagtaatatcttatattttcaagacaaaatttttat 173  Q
    ||||||||||| ||||||||||||  |||||||||||||||    
T  31089572 atcaaaagtaacatcttatattttttagacaaaatttttat 31089532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 116 - 199
Target Start/End: Complemental strand, 30840671 - 30840588
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccattatcctg 199  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| ||| | |  ||||||| |||||||| |||||||    
T  30840671 tgtgtaatcattacttgatcaaaagtaacatcttatattttcaagacaaattttctgttagtagattccttaaccaatatcctg 30840588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 200
Target Start/End: Original strand, 11815951 - 11816035
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccattatcctga 200  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||   ||||||  ||||||||| ||||||    
T  11815951 tgtgtaatcattactttatcaaaagtaacatcttatattttcaagacaaaatttctatttttagattcattaaccattgtcctga 11816035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 191
Target Start/End: Complemental strand, 30293894 - 30293821
Alignment:
Q  118 tgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaacca 191  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||| |||  |||||||  |||||||    
T  30293894 tgtaatcattacttgatcaaaagtaacatcttatatttttaagacaaaatttctatttgtagattctttaacca 30293821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 41645072 - 41645129
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttat 173  Q
    ||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||    
T  41645072 tgtgtaatcattacttgataaaaaataatatcttatattttctagacaaaatttttat 41645129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 36482091 - 36482169
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccatta 194  Q
    ||||||| ||||| |||||||||||||| ||||||||||||||| ||||||||| |||  |||||||  ||||||||||    
T  36482091 tgtgtaaacattatttgatcaaaagtaacatcttatattttcaaaacaaaatttctatttgtagattcattaaccatta 36482169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 202
Target Start/End: Complemental strand, 14044753 - 14044669
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccattatcctgatg 202  Q
    |||||||| |||||||||||||||||||||||||||| |||||||| ||||  |||||  ||||||| |||||| ||| ||||||||    
T  14044753 tgtgtaataattacttgatcaaaagtaatatcttata-tttcaaga-aaaaaatttatttgtagattccttaacaattgtcctgatg 14044669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 172
Target Start/End: Complemental strand, 2089194 - 2089133
Alignment:
Q  111 aaaactgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaattttta 172  Q
    |||| |||||||| |||| |||||||||||||| ||||||||||| |||||||||| |||||    
T  2089194 aaaattgtgtaataattatttgatcaaaagtaaaatcttatatttccaagacaaaaatttta 2089133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 18242479 - 18242532
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaattt 169  Q
    ||||||||||||||| ||||||||||   |||||||||||||||||||||||||    
T  18242479 tgtgtaatcattactagatcaaaagtcgcatcttatattttcaagacaaaattt 18242532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 193
Target Start/End: Original strand, 22294024 - 22294101
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccatt 193  Q
    |||| ||| |||| ||||||||||  |||||||||||||| ||||||||||||| |||  ||||||| ||||||||||    
T  22294024 tgtgcaataattatttgatcaaaaccaatatcttatatttccaagacaaaatttctatttgtagattccttaaccatt 22294101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 187
Target Start/End: Original strand, 27544629 - 27544700
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttctta 187  Q
    |||||||||||||| |||| |||| ||| ||||||||||||||||| ||||||| |||  ||||||| ||||    
T  27544629 tgtgtaatcattacatgataaaaaataacatcttatattttcaagataaaatttctatttgtagattcctta 27544700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 191
Target Start/End: Complemental strand, 1920813 - 1920744
Alignment:
Q  122 atcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaacca 191  Q
    ||||||| ||| |||||||||| | |||||||||  |||||||||||| ||| | |||||||||||||||    
T  1920813 atcattatttggtcaaaagtaacaccttatatttctaagacaaaatttctattcatagatttcttaacca 1920744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 34346951 - 34346999
Alignment:
Q  145 atcttatattttcaagacaaaatttttatccgtagatttcttaaccatt 193  Q
    ||||||||||||||||||||| |||||||  ||||||| ||||||||||    
T  34346951 atcttatattttcaagacaaattttttatttgtagattccttaaccatt 34346999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 15139234 - 15139159
Alignment:
Q  125 attacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccattatcctga 200  Q
    ||||||| ||||||| | | ||||||||||||||||||||| |||||||   ||| || |||||||||||| ||||    
T  15139234 attacttaatcaaaaatcaaatcttatattttcaagacaaattttttatttatagtttccttaaccattattctga 15139159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 169
Target Start/End: Complemental strand, 8151857 - 8151815
Alignment:
Q  127 tacttgatcaaaagtaatatcttatattttcaagacaaaattt 169  Q
    |||||||| |||||||| ||||||||||||||| |||||||||    
T  8151857 tacttgattaaaagtaacatcttatattttcaaaacaaaattt 8151815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 27366041 - 27365991
Alignment:
Q  119 gtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaattt 169  Q
    |||||||||| ||| || ||||||||||||||||||| ||||| |||||||    
T  27366041 gtaatcattatttggtctaaagtaatatcttatatttccaagataaaattt 27365991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 3360746 - 3360693
Alignment:
Q  120 taatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttat 173  Q
    ||||||| | |||||||||||||||  ||||||||| ||| |||||||||||||    
T  3360746 taatcatcatttgatcaaaagtaattccttatatttccaacacaaaatttttat 3360693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 222
Target Start/End: Complemental strand, 12036379 - 12036275
Alignment:
Q  118 tgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccattatcctgatggtaccggttaacaaa 217  Q
    |||||| ||||||| ||||||||| | | ||||||||||||||||||| ||| |||   ||| || |||||| |||  ||||| ||||| ||||| |||     
T  12036379 tgtaattattacttaatcaaaagtcaaaacttatattttcaagacaaattttctatttataggttccttaactatttccctgagggtactggttagcaag 12036280  T
Q  218 accct 222  Q
    |||||    
T  12036279 accct 12036275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 221
Target Start/End: Complemental strand, 8001820 - 8001715
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccattatcctgatggtaccggttaaca 215  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| |||   |||||| ||||||||||  ||||| || || ||||| ||    
T  8001820 tgtgtaatcattactttatcaaaagtaacatcttatattttcaagataaaatttctatttctagattccttaaccattgccctgagggcactggttagca 8001721  T
Q  216 aaaccc 221  Q
    ||||||    
T  8001720 aaaccc 8001715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 228
Target Start/End: Original strand, 27688519 - 27688631
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccattatcctgatggtaccggttaaca 215  Q
    |||||||||||||||| ||||||||||| ||||||||||||||| | |||||||| ||  ||||||| |||||| |||  | |||||  || ||||||||    
T  27688519 tgtgtaatcattactttatcaaaagtaacatcttatattttcaatataaaattttaatttgtagattccttaacaatttccttgatgacactggttaaca 27688618  T
Q  216 aaaccctattttt 228  Q
    | |||||||||||    
T  27688619 agaccctattttt 27688631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 193
Target Start/End: Original strand, 5069538 - 5069613
Alignment:
Q  118 tgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccatt 193  Q
    |||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||  |||||||  |||||||||    
T  5069538 tgtaatcattactttatcaaaaataatatcttatatttacaagacaaaatttttatatgtagattctttaaccatt 5069613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 223
Target Start/End: Complemental strand, 46295944 - 46295837
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccattatcctgatggtaccggttaaca 215  Q
    ||||| || ||||||||||||||||||| || |||||||||||||| |||||||||||  ||||||| ||||||||||  || || ||||| ||||| ||    
T  46295944 tgtgtcatgattacttgatcaaaagtaacattttatattttcaagataaaatttttatttgtagattccttaaccattgccccgaaggtactggttagca 46295845  T
Q  216 aaacccta 223  Q
    | ||||||    
T  46295844 agacccta 46295837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 193
Target Start/End: Original strand, 26829532 - 26829609
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccatt 193  Q
    |||||||||||||||| ||||||||||| ||||||||||| ||||||||||||| ||   ||| ||||||||||||||    
T  26829532 tgtgtaatcattactttatcaaaagtaacatcttatatttccaagacaaaatttctaattgtaaatttcttaaccatt 26829609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 10226535 - 10226464
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttctta 187  Q
    |||||||||||||||| ||||||| ||| ||||||||||||||||||||||||| |||  ||||||| ||||    
T  10226535 tgtgtaatcattactttatcaaaattaacatcttatattttcaagacaaaatttctatttgtagattcctta 10226464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 169
Target Start/End: Complemental strand, 33148209 - 33148151
Alignment:
Q  111 aaaactgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaattt 169  Q
    |||| |||||||||||||||||||||||||||  |||||||||||| ||||||||||||    
T  33148209 aaaattgtgtaatcattacttgatcaaaagtagcatcttatatttttaagacaaaattt 33148151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 39993447 - 39993495
Alignment:
Q  145 atcttatattttcaagacaaaatttttatccgtagatttcttaaccatt 193  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||    
T  39993447 atcttatattttcaagacaaaatttttatttgtagatttcttaaccatt 39993495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 189
Target Start/End: Complemental strand, 13969177 - 13969099
Alignment:
Q  111 aaaactgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaac 189  Q
    |||| |||||||| ||||||| || |||||||| || |||||||||||||||||||||| |||  ||||||| ||||||    
T  13969177 aaaattgtgtaataattacttaattaaaagtaacattttatattttcaagacaaaatttctatttgtagattccttaac 13969099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 17169339 - 17169266
Alignment:
Q  120 taatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccatt 193  Q
    |||| ||||||| ||||||| ||| |||||||||||||||||||| ||||||||  ||| ||||||||| ||||    
T  17169339 taataattactttatcaaaaataacatcttatattttcaagacaatatttttatttgtaaatttcttaatcatt 17169266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 37494213 - 37494264
Alignment:
Q  118 tgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaattt 169  Q
    |||||||||||||| ||||||| ||| ||||||||||||||||| |||||||    
T  37494213 tgtaatcattactttatcaaaaataacatcttatattttcaagataaaattt 37494264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 32187108 - 32187146
Alignment:
Q  131 tgatcaaaagtaatatcttatattttcaagacaaaattt 169  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  32187108 tgatcaaaagtaacatcttatattttcaagacaaaattt 32187146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 37597202 - 37597148
Alignment:
Q  119 gtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttat 173  Q
    ||||||||||||||||||||| ||| |||||| |||| |||||||| ||||||||    
T  37597202 gtaatcattacttgatcaaaaataaaatcttacatttccaagacaatatttttat 37597148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 193
Target Start/End: Original strand, 40699285 - 40699367
Alignment:
Q  111 aaaactgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccatt 193  Q
    |||| |||||||| |||||| |||||||||||| ||||||| ||| ||||||||||  | |||  ||||||| ||||||||||    
T  40699285 aaaattgtgtaattattactcgatcaaaagtaaaatcttatgtttccaagacaaaaaatgtatttgtagattccttaaccatt 40699367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 39238872 - 39238928
Alignment:
Q  117 gtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttat 173  Q
    |||||||||||||||||||||| |||| | |||| ||||| |||| |||||||||||    
T  39238872 gtgtaatcattacttgatcaaatgtaacaacttacatttttaagagaaaatttttat 39238928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 50015844 - 50015796
Alignment:
Q  120 taatcattacttgatcaaaagtaatatcttatattttcaagacaaaatt 168  Q
    ||||| || ||||||||||||||||||| |||||||| |||||||||||    
T  50015844 taatcgttgcttgatcaaaagtaatatcatatatttttaagacaaaatt 50015796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 38169094 - 38169138
Alignment:
Q  117 gtgtaatcattacttgatcaaaagtaatatcttatattttcaaga 161  Q
    |||||||||||||||||||||  |||| | |||||||||||||||    
T  38169094 gtgtaatcattacttgatcaagtgtaacaacttatattttcaaga 38169138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 38597524 - 38597560
Alignment:
Q  120 taatcattacttgatcaaaagtaatatcttatatttt 156  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  38597524 taatcattacttaatcaaaagtgatatcttatatttt 38597560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 52762366 - 52762318
Alignment:
Q  125 attacttgatcaaaagtaatatcttatattttcaagacaaaatttttat 173  Q
    ||||||||||||||||| | |  |||||||| |||||||||||||||||    
T  52762366 attacttgatcaaaagttaaaatttatatttacaagacaaaatttttat 52762318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 111 - 223
Target Start/End: Complemental strand, 8896676 - 8896564
Alignment:
Q  111 aaaactgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccattatcctgatggtaccggt 210  Q
    |||| |||||||||||||| ||||||||||||| |||||||||||| |||||||||||| |||  |||||||  |||| |||| |  ||| || || |||    
T  8896676 aaaattgtgtaatcattacctgatcaaaagtaacatcttatatttttaagacaaaatttatatttgtagattctttaaacattgttgtgagggcactggt 8896577  T
Q  211 taacaaaacccta 223  Q
    |||||||||||||    
T  8896576 taacaaaacccta 8896564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 19677035 - 19677110
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaacca 191  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||  || |||| ||||||||    
T  19677035 tgtgtaatcattacttaatcaaaagtaacatcttatattttcaagacaaaatttctatttgtcgattccttaacca 19677110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 43118860 - 43118952
Alignment:
Q  130 ttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccattatcctgatggtaccggttaacaaaaccct 222  Q
    ||||||||| |||| |||| |||||||||||||||||||| |||  ||||||||||||||||||  ||||  || |||||||||||| |||||    
T  43118860 ttgatcaaatgtaacatctcatattttcaagacaaaatttatatttgtagatttcttaaccattgccctggaggcaccggttaacaagaccct 43118952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 12810220 - 12810166
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttt 170  Q
    |||||||| |||||||  ||||||||||||||||||||||| |||||||||||||    
T  12810220 tgtgtaattattactttgtcaaaagtaatatcttatatttttaagacaaaatttt 12810166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 16979982 - 16980035
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaattt 169  Q
    ||||| || |||||| |||||||||||| |||||||||||||||||||||||||    
T  16979982 tgtgtgattattactcgatcaaaagtaacatcttatattttcaagacaaaattt 16980035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 16685772 - 16685848
Alignment:
Q  116 tgtgtaatcattacttgatcaaa-agtaatatcttatattttcaagacaaaatttttatccgtagatttcttaacca 191  Q
    ||||||||||||||||||||||| ||||| |||||||||||  ||||||||| || |||  ||||||| ||||||||    
T  16685772 tgtgtaatcattacttgatcaaagagtaacatcttatatttcaaagacaaaacttctattagtagattccttaacca 16685848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 17660008 - 17660084
Alignment:
Q  116 tgtgtaatcattacttgatcaaa-agtaatatcttatattttcaagacaaaatttttatccgtagatttcttaacca 191  Q
    ||||||||||||||||||||||| ||||| |||||||||||  ||||||||| || |||  ||||||| ||||||||    
T  17660008 tgtgtaatcattacttgatcaaagagtaacatcttatatttcaaagacaaaacttctattagtagattccttaacca 17660084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 42888343 - 42888423
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccattatc 196  Q
    |||| ||||||||||| |||||||| || ||||||||||||||||  ||||  |||||  ||||||| |||||||||||||    
T  42888343 tgtgcaatcattactttatcaaaagcaacatcttatattttcaagttaaaaaatttatttgtagattccttaaccattatc 42888423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 195
Target Start/End: Original strand, 43626382 - 43626466
Alignment:
Q  111 aaaactgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccattat 195  Q
    |||| |||||||| ||||||| || |||| ||| |||| || |||||||||||||||||||||  | ||||||||||| ||||||    
T  43626382 aaaattgtgtaattattactttataaaaaataacatctaattttttcaagacaaaatttttatttgaagatttcttaatcattat 43626466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 23080696 - 23080658
Alignment:
Q  118 tgtaatcattacttgatcaaaagtaatatcttatatttt 156  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  23080696 tgtaatcattacttgatcaaaagtaacatcttatatttt 23080658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 31249568 - 31249606
Alignment:
Q  131 tgatcaaaagtaatatcttatattttcaagacaaaattt 169  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  31249568 tgatcaaaagtaacatcttatattttcaagacaaaattt 31249606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 8746180 - 8746233
Alignment:
Q  120 taatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttat 173  Q
    ||||||||| |||||||||||||| ||  ||||||| |||||||||||||||||    
T  8746180 taatcattatttgatcaaaagtaacattctatatttacaagacaaaatttttat 8746233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 193
Target Start/End: Complemental strand, 23142725 - 23142649
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccatt 193  Q
    |||||||| ||||||||||||||| ||| ||||||||||| ||| ||||||||| |||  |||||||| |||| ||||    
T  23142725 tgtgtaataattacttgatcaaaaataacatcttatatttccaa-acaaaatttctatttgtagatttattaatcatt 23142649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 186
Target Start/End: Original strand, 30028004 - 30028076
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatct--tatattttcaagacaaaatttttatccgtagatttctt 186  Q
    ||||| |||||||||| ||||||||||| ||||  |||||||||| |||||||||| || | |||||||||||    
T  30028004 tgtgtgatcattactttatcaaaagtaacatcttatatattttcatgacaaaatttctaactgtagatttctt 30028076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 34993201 - 34993148
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaattt 169  Q
    |||||||| |||| || ||||||||||| |||||||||||| ||||||||||||    
T  34993201 tgtgtaattattattttatcaaaagtaacatcttatatttttaagacaaaattt 34993148  T

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Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 34993142 - 34993094
Alignment:
Q  145 atcttatattttcaagacaaaatttttatccgtagatttcttaaccatt 193  Q
    ||||||||||||||||||||||||| |||  ||||||| ||||||||||    
T  34993142 atcttatattttcaagacaaaatttatatttgtagattccttaaccatt 34993094  T

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Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 18037921 - 18037866
Alignment:
Q  118 tgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttat 173  Q
    |||||| |||| |||||||||||||| |  |||||||||||| |||||||||||||    
T  18037921 tgtaattattatttgatcaaaagtaacaatttatattttcaaaacaaaatttttat 18037866  T

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Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 31850819 - 31850764
Alignment:
Q  118 tgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttat 173  Q
    ||||||||||| || || |||||||| |||||||||||  ||||||||||||||||    
T  31850819 tgtaatcattattttattaaaagtaacatcttatatttctaagacaaaatttttat 31850764  T

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Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 37928340 - 37928393
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaattt 169  Q
    |||||||| ||||||| ||||||| ||| || |||||||||||||| |||||||    
T  37928340 tgtgtaataattactttatcaaaaataacattttatattttcaagataaaattt 37928393  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 200
Target Start/End: Complemental strand, 18221055 - 18220975
Alignment:
Q  120 taatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccattatcctga 200  Q
    |||| ||||||| |||||| |||| ||||||||||| |||| ||||| || |||  ||||||| |||||||| || |||||    
T  18221055 taattattacttaatcaaatgtaacatcttatatttccaagtcaaaacttctattagtagattccttaaccaataccctga 18220975  T

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Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 33194763 - 33194819
Alignment:
Q  117 gtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttat 173  Q
    ||||||||||||||| |||||| || |||  ||||||||| ||||||||| ||||||    
T  33194763 gtgtaatcattacttaatcaaatgtgatagtttatatttttaagacaaaacttttat 33194819  T

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Target: scaffold0079 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 216
Target Start/End: Original strand, 51688 - 51786
Alignment:
Q  118 tgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccattatcctgatggtaccggttaacaa 216  Q
    |||||||||||||| ||||||||||| || ||||||||  ||||||||| ||||||  ||| ||| |||||||||| |||| | ||||  |||||||||    
T  51688 tgtaatcattacttaatcaaaagtaacattttatatttcaaagacaaaaattttatttgtaaattccttaaccattgtcctaagggtaatggttaacaa 51786  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 222
Target Start/End: Original strand, 2470395 - 2470497
Alignment:
Q  120 taatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccattatcctgatggtaccggttaacaaaac 219  Q
    |||||||||||||| ||||| |||||||||||||||  |||||||| ||| |||  |  |||| |||||||||| |||||| ||||| ||||| ||| ||    
T  2470395 taatcattacttgaacaaaaataatatcttatatttcaaagacaaactttctatttggtgattccttaaccattgtcctgagggtactggttagcaagac 2470494  T
Q  220 cct 222  Q
    |||    
T  2470495 cct 2470497  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 194
Target Start/End: Complemental strand, 33121384 - 33121306
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccatta 194  Q
    ||||||||||||  ||||| |||| ||| |||||||||||||||||||||| ||||||  | | |||||||||||||||    
T  33121384 tgtgtaatcattgtttgataaaaaataacatcttatattttcaagacaaaaattttatttgaaaatttcttaaccatta 33121306  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 32134086 - 32134159
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaac 189  Q
    ||||||||||||||||||| |||| ||| |||||||||| |||| ||||||||| |||  ||||||| ||||||    
T  32134086 tgtgtaatcattacttgataaaaaataacatcttatattctcaaaacaaaatttctatttgtagattccttaac 32134159  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 166
Target Start/End: Complemental strand, 2911536 - 2911490
Alignment:
Q  120 taatcattacttgatcaaaagtaatatcttatattttcaagacaaaa 166  Q
    ||||||||||||||||||| |||| |||||| |||||||||||||||    
T  2911536 taatcattacttgatcaaatgtaacatcttacattttcaagacaaaa 2911490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 17454046 - 17453992
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttt 170  Q
    |||||||| ||||| ||||||||||||| ||||||||||||||| | ||||||||    
T  17454046 tgtgtaattattacgtgatcaaaagtaacatcttatattttcaaaataaaatttt 17453992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 194
Target Start/End: Complemental strand, 19320344 - 19320266
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccatta 194  Q
    ||||||||| |||||| ||||||||||| || |||||||| ||||||||||  |||||  ||||||| ||||| |||||    
T  19320344 tgtgtaatcgttactttatcaaaagtaacattttatatttgcaagacaaaaaatttatttgtagattccttaatcatta 19320266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 167
Target Start/End: Original strand, 18493285 - 18493334
Alignment:
Q  118 tgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaat 167  Q
    |||||| ||||||||||||||||||| || |||||||||||||| |||||    
T  18493285 tgtaataattacttgatcaaaagtaacattttatattttcaagataaaat 18493334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 17345913 - 17345858
Alignment:
Q  118 tgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttat 173  Q
    |||||||  ||||||||||||||||| || ||||||||| || |||||||||||||    
T  17345913 tgtaatcgctacttgatcaaaagtaacattttatatttttaaaacaaaatttttat 17345858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 19659687 - 19659635
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaattt 169  Q
    ||||||||||||| |||||||||  |||||||| |||||||||| |||||||||    
T  19659687 tgtgtaatcattagttgatcaaatataatatctcatattttcaa-acaaaattt 19659635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 227392 - 227452
Alignment:
Q  133 atcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccatt 193  Q
    ||||||||||| ||||||||||||||| | ||||||| |||   |||||| ||||||||||    
T  227392 atcaaaagtaacatcttatattttcaaaaaaaaatttctatttatagattccttaaccatt 227452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 2613416 - 2613372
Alignment:
Q  125 attacttgatcaaaagtaatatcttatattttcaagacaaaattt 169  Q
    ||||||||||||||||||  | |||||||||| ||||||||||||    
T  2613416 attacttgatcaaaagtagcaacttatatttttaagacaaaattt 2613372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 10008234 - 10008286
Alignment:
Q  117 gtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaattt 169  Q
    ||||||| |||||||||||||||||||    ||||||||| ||||||||||||    
T  10008234 gtgtaattattacttgatcaaaagtaaccgtttatatttttaagacaaaattt 10008286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 164
Target Start/End: Complemental strand, 17835045 - 17835001
Alignment:
Q  120 taatcattacttgatcaaaagtaatatcttatattttcaagacaa 164  Q
    |||| ||||||| |||||||||||||||||||||||  |||||||    
T  17835045 taattattacttaatcaaaagtaatatcttatatttcaaagacaa 17835001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 3369 - 3422
Alignment:
Q  120 taatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttat 173  Q
    |||||| ||||| ||||||||||| || ||||||||||||||||||||||||||    
T  3369 taatcaatactttatcaaaagtaacattttatattttcaagacaaaatttttat 3422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 36576 - 36629
Alignment:
Q  120 taatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttat 173  Q
    ||||||||| || ||||||||||| ||||||||||||||| |||||||||||||    
T  36576 taatcattatttaatcaaaagtaacatcttatattttcaaaacaaaatttttat 36629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 193
Target Start/End: Original strand, 120709 - 120786
Alignment:
Q  116 tgtgtaatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccatt 193  Q
    |||| |||| |||||| | ||||||| | ||||||||||||||||||||||||| |||  ||||||| ||||||||||    
T  120709 tgtgcaatcgttactttaccaaaagtgacatcttatattttcaagacaaaatttctatttgtagattccttaaccatt 120786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 200
Target Start/End: Complemental strand, 15435 - 15355
Alignment:
Q  120 taatcattacttgatcaaaagtaatatcttatattttcaagacaaaatttttatccgtagatttcttaaccattatcctga 200  Q
    ||||| ||||||| |||||||||| |||||||||||||||||||||| || |||   || ||| ||||| |||||||||||    
T  15435 taatcgttacttggtcaaaagtaacatcttatattttcaagacaaaaattctatttataaattccttaatcattatcctga 15355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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