View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8501_low_3 (Length: 559)

Name: NF8501_low_3
Description: NF8501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8501_low_3
NF8501_low_3
[»] chr1 (5 HSPs)
chr1 (17-241)||(52689768-52689992)
chr1 (240-291)||(7604858-7604909)
chr1 (241-288)||(31768413-31768460)
chr1 (241-281)||(28237336-28237376)
chr1 (241-281)||(42773322-42773362)
[»] chr5 (4 HSPs)
chr5 (396-553)||(4352376-4352533)
chr5 (243-347)||(4352579-4352684)
chr5 (401-476)||(4352367-4352442)
chr5 (249-281)||(29656069-29656101)
[»] chr3 (11 HSPs)
chr3 (396-553)||(12571140-12571297)
chr3 (396-553)||(13547604-13547761)
chr3 (249-348)||(12570993-12571093)
chr3 (249-348)||(13547457-13547557)
chr3 (401-476)||(12571231-12571306)
chr3 (401-476)||(13547695-13547770)
chr3 (241-289)||(11396755-11396803)
chr3 (242-289)||(28907587-28907634)
chr3 (241-291)||(13867399-13867449)
chr3 (249-291)||(52134638-52134680)
chr3 (240-281)||(3848187-3848228)
[»] chr6 (10 HSPs)
chr6 (396-553)||(4294200-4294357)
chr6 (241-345)||(4294407-4294512)
chr6 (401-477)||(4294190-4294266)
chr6 (239-291)||(8977008-8977060)
chr6 (241-288)||(4659056-4659103)
chr6 (240-289)||(3066445-3066494)
chr6 (240-281)||(30906235-30906276)
chr6 (241-289)||(33051359-33051407)
chr6 (238-289)||(19121459-19121510)
chr6 (249-291)||(27447220-27447262)
[»] chr7 (6 HSPs)
chr7 (48-241)||(33168040-33168222)
chr7 (235-291)||(39704314-39704370)
chr7 (238-291)||(6841421-6841474)
chr7 (240-288)||(11646704-11646752)
chr7 (241-281)||(39445848-39445888)
chr7 (240-291)||(13764943-13764994)
[»] scaffold0014 (3 HSPs)
scaffold0014 (396-553)||(33646-33799)
scaffold0014 (241-348)||(33846-33954)
scaffold0014 (401-475)||(33638-33712)
[»] chr4 (3 HSPs)
chr4 (241-291)||(41813496-41813546)
chr4 (240-288)||(17404767-17404815)
chr4 (238-291)||(19463014-19463066)
[»] chr8 (2 HSPs)
chr8 (241-291)||(24279061-24279111)
chr8 (243-291)||(15610343-15610391)
[»] scaffold0475 (1 HSPs)
scaffold0475 (241-288)||(6353-6400)
[»] chr2 (1 HSPs)
chr2 (241-288)||(2040163-2040210)
[»] scaffold0003 (2 HSPs)
scaffold0003 (241-291)||(33478-33528)
scaffold0003 (249-291)||(40096-40138)
[»] scaffold0318 (1 HSPs)
scaffold0318 (240-288)||(6541-6589)


Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-116; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 52689992 - 52689768
Alignment:
Q  17 aaaatcaagcaaaaagccaagttctctttatagttggtattatagaagtacgattccaatgagataaacagtcacagatccacactaaatgatataccaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52689992 aaaatcaagcaaaaagccaagttctctttatagttggtattttagaagtacgattccaatgagataaacagtcacagatccacactaaatgatataccaa 52689893  T
Q  117 gggtttgtaatcgttaaagatggttttgttcaccgataatcaccactccaaataacatttacttaaaaagataggtaagtgttaaagattgggatgcaat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  52689892 gggtttgtaatcgttaaagatggttttgttcaccgataatcaccactccaaataacatttacttaaaaagataggtaagcgttaaagattgggatgcaat 52689793  T
Q  217 tagccaatcacccaattaatatata 241  Q
    |||||||||||||||| ||||||||    
T  52689792 tagccaatcacccaatcaatatata 52689768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 240 - 291
Target Start/End: Original strand, 7604858 - 7604909
Alignment:
Q  240 tactagaatttttacccgtgctaccgcccggatcataaacaatagagaagct 291  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  7604858 tactagaacttttacccgtgctaccgcccggatcataaacaatggagaagct 7604909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 288
Target Start/End: Original strand, 31768413 - 31768460
Alignment:
Q  241 actagaatttttacccgtgctaccgcccggatcataaacaatagagaa 288  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||    
T  31768413 actagaacttttacccgtgctaccgcccggatcataaacaatggagaa 31768460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 281
Target Start/End: Original strand, 28237336 - 28237376
Alignment:
Q  241 actagaatttttacccgtgctaccgcccggatcataaacaa 281  Q
    |||||||||||||||||||||||| ||||| ||||||||||    
T  28237336 actagaatttttacccgtgctaccacccgggtcataaacaa 28237376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 42773362 - 42773322
Alignment:
Q  241 actagaatttttacccgtgctaccgcccggatcataaacaa 281  Q
    ||||||| |||||||||||||||||||||| ||||||||||    
T  42773362 actagaacttttacccgtgctaccgcccgggtcataaacaa 42773322  T

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Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 396 - 553
Target Start/End: Complemental strand, 4352533 - 4352376
Alignment:
Q  396 ttattcttctaatgaatactatcaaatgaaaatcttcatcataacaatgataaaaataaatcattcatcttaaagaatttcatacctactacttctaatg 495  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  | |||||||||||    
T  4352533 ttattcttctaatgaatactatcaaatgaaaatcttcatcataacaatgataaaaataaatccttcatcttaaagaatttcatactgattacttctaatg 4352434  T
Q  496 aatactactaaacgaaaatcttcatcnnnnnnntgtcaaaaataaatccttcttctca 553  Q
    ||||||||  ||||||||||||||||       ||||||||||||||||||| |||||    
T  4352433 aatactaccgaacgaaaatcttcatcaaaaaaatgtcaaaaataaatccttcatctca 4352376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 243 - 347
Target Start/End: Complemental strand, 4352684 - 4352579
Alignment:
Q  243 tagaatttttacccgtgctaccgcccggatcataaacaatagagaagctcttgcctcagaccaaaccgggcgtcgaataaagttaa-gattcacgcattc 341  Q
    ||||| ||||||| | |||||||||||| ||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||    
T  4352684 tagaacttttacctgcgctaccgcccgggtcataaacaatggagaagctcttgccttagaccaaaccggacgtcgaataaagttaaggattcacgcattc 4352585  T
Q  342 ttctct 347  Q
    ||||||    
T  4352584 ttctct 4352579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 401 - 476
Target Start/End: Complemental strand, 4352442 - 4352367
Alignment:
Q  401 cttctaatgaatactatcaaatgaaaatcttcatcataacaatgataaaaataaatcattcatcttaaagaatttc 476  Q
    |||||||||||||||| | || |||||||||||||| || ||||  ||||||||||| ||||||| ||||||||||    
T  4352442 cttctaatgaatactaccgaacgaaaatcttcatcaaaaaaatgtcaaaaataaatccttcatctcaaagaatttc 4352367  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 249 - 281
Target Start/End: Original strand, 29656069 - 29656101
Alignment:
Q  249 ttttacccgtgctaccgcccggatcataaacaa 281  Q
    |||||||||||||||||||||| ||||||||||    
T  29656069 ttttacccgtgctaccgcccgggtcataaacaa 29656101  T

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Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 396 - 553
Target Start/End: Original strand, 12571140 - 12571297
Alignment:
Q  396 ttattcttctaatgaatactatcaaatgaaaatcttcatcataacaatgataaaaataaatcattcatcttaaagaatttcatacctactacttctaatg 495  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  12571140 ttattcttctaatgaatactatcaaatgaaaatcttcatcataacaatgataaaaataaatctttcatcttaaagaatttcatactgactacttctaatg 12571239  T
Q  496 aatactactaaacgaaaatcttcatcnnnnnnntgtcaaaaataaatccttcttctca 553  Q
    ||||||||  || |||||||||||||       ||||||||||||||||||| |||||    
T  12571240 aatactacggaatgaaaatcttcatcaaaaaaatgtcaaaaataaatccttcatctca 12571297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 396 - 553
Target Start/End: Original strand, 13547604 - 13547761
Alignment:
Q  396 ttattcttctaatgaatactatcaaatgaaaatcttcatcataacaatgataaaaataaatcattcatcttaaagaatttcatacctactacttctaatg 495  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  13547604 ttattcttctaatgaatactatcaaatgaaaatcttcatcataacaatgataaaaataaatctttcatcttaaagaatttcatactgactacttctaatg 13547703  T
Q  496 aatactactaaacgaaaatcttcatcnnnnnnntgtcaaaaataaatccttcttctca 553  Q
    ||||||||  || |||||||||||||       ||||||||||||||||||| |||||    
T  13547704 aatactacggaatgaaaatcttcatcaaaaaaatgtcaaaaataaatccttcatctca 13547761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 249 - 348
Target Start/End: Original strand, 12570993 - 12571093
Alignment:
Q  249 ttttacccgtgctaccgcccggatcataaacaatagagaagctcttgcctcagaccaaaccgggcgtcgaataaagttaa-gattcacgcattcttctct 347  Q
    ||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||||| |||||| || |||||||| ||||||||||||||| |||    
T  12570993 ttttacctgtgctaccacccgggtcataaacaatggagaagctcttgcctcagaccaaaccaggcgtcaaacaaagttaaggattcacgcattcttttct 12571092  T
Q  348 c 348  Q
    |    
T  12571093 c 12571093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 249 - 348
Target Start/End: Original strand, 13547457 - 13547557
Alignment:
Q  249 ttttacccgtgctaccgcccggatcataaacaatagagaagctcttgcctcagaccaaaccgggcgtcgaataaagttaa-gattcacgcattcttctct 347  Q
    ||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||||| |||||| || |||||||| ||||||||||||||| |||    
T  13547457 ttttacctgtgctaccacccgggtcataaacaatggagaagctcttgcctcagaccaaaccaggcgtcaaacaaagttaaggattcacgcattcttttct 13547556  T
Q  348 c 348  Q
    |    
T  13547557 c 13547557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 401 - 476
Target Start/End: Original strand, 12571231 - 12571306
Alignment:
Q  401 cttctaatgaatactatcaaatgaaaatcttcatcataacaatgataaaaataaatcattcatcttaaagaatttc 476  Q
    ||||||||||||||||   ||||||||||||||||| || ||||  ||||||||||| ||||||| ||||||||||    
T  12571231 cttctaatgaatactacggaatgaaaatcttcatcaaaaaaatgtcaaaaataaatccttcatctcaaagaatttc 12571306  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 401 - 476
Target Start/End: Original strand, 13547695 - 13547770
Alignment:
Q  401 cttctaatgaatactatcaaatgaaaatcttcatcataacaatgataaaaataaatcattcatcttaaagaatttc 476  Q
    ||||||||||||||||   ||||||||||||||||| || ||||  ||||||||||| ||||||| ||||||||||    
T  13547695 cttctaatgaatactacggaatgaaaatcttcatcaaaaaaatgtcaaaaataaatccttcatctcaaagaatttc 13547770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 289
Target Start/End: Complemental strand, 11396803 - 11396755
Alignment:
Q  241 actagaatttttacccgtgctaccgcccggatcataaacaatagagaag 289  Q
    ||||||| |||||||||||||||||||||| ||||||||||| ||||||    
T  11396803 actagaacttttacccgtgctaccgcccgggtcataaacaatggagaag 11396755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 289
Target Start/End: Complemental strand, 28907634 - 28907587
Alignment:
Q  242 ctagaatttttacccgtgctaccgcccggatcataaacaatagagaag 289  Q
    |||||| ||||||||||||||| |||||| ||||||||||| ||||||    
T  28907634 ctagaacttttacccgtgctactgcccgggtcataaacaatggagaag 28907587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 241 - 291
Target Start/End: Original strand, 13867399 - 13867449
Alignment:
Q  241 actagaatttttacccgtgctaccgcccggatcataaacaatagagaagct 291  Q
    ||||||| |||||| ||||||||||| ||| ||||||||||| ||||||||    
T  13867399 actagaacttttactcgtgctaccgctcgggtcataaacaatggagaagct 13867449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 291
Target Start/End: Complemental strand, 52134680 - 52134638
Alignment:
Q  249 ttttacccgtgctaccgcccggatcataaacaatagagaagct 291  Q
    |||||||| ||||||||||||| ||||||||||| ||||||||    
T  52134680 ttttacccatgctaccgcccgggtcataaacaatggagaagct 52134638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 3848228 - 3848187
Alignment:
Q  240 tactagaatttttacccgtgctaccgcccggatcataaacaa 281  Q
    |||||||| ||||||||||||||||| |||| ||||||||||    
T  3848228 tactagaacttttacccgtgctaccgtccgggtcataaacaa 3848187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 3e-52; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 396 - 553
Target Start/End: Complemental strand, 4294357 - 4294200
Alignment:
Q  396 ttattcttctaatgaatactatcaaatgaaaatcttcatcataacaatgataaaaataaatcattcatcttaaagaatttcatacctactacttctaatg 495  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||    
T  4294357 ttattcttctaatgaatactatcaaataaaaatcttcatcataacaatgataaaaataaatccttcatcttaaaaaatttcataccgactacttctaatg 4294258  T
Q  496 aatactactaaacgaaaatcttcatcnnnnnnntgtcaaaaataaatccttcttctca 553  Q
    ||||||||  |||||||||||||||        ||||||||||||||||||| |||||    
T  4294257 aatactaccgaacgaaaatcttcataaaaaaaatgtcaaaaataaatccttcatctca 4294200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 241 - 345
Target Start/End: Complemental strand, 4294512 - 4294407
Alignment:
Q  241 actagaatttttacccgtgctaccgcccggatcataaacaatagagaagctcttgcctcagaccaaaccgggcgtcgaataaagttaa-gattcacgcat 339  Q
    ||||||| |||||||| | ||||||| ||| ||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||| |||||| ||||    
T  4294512 actagaacttttacccatactaccgctcgggtcataaacaatggagaagctcttgcctcggaccaaatcgggcgtcgaataaagttaaggattcatgcat 4294413  T
Q  340 tcttct 345  Q
    ||||||    
T  4294412 tcttct 4294407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 477
Target Start/End: Complemental strand, 4294266 - 4294190
Alignment:
Q  401 cttctaatgaatactatcaaatgaaaatcttcatcataacaatgataaaaataaatcattcatcttaaagaatttca 477  Q
    |||||||||||||||| | || |||||||||||| | || ||||  ||||||||||| ||||||| |||||||||||    
T  4294266 cttctaatgaatactaccgaacgaaaatcttcataaaaaaaatgtcaaaaataaatccttcatctcaaagaatttca 4294190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 8977060 - 8977008
Alignment:
Q  239 atactagaatttttacccgtgctaccgcccggatcataaacaatagagaagct 291  Q
    ||||||||| |||||||||||||||||||||| ||||||||||| || |||||    
T  8977060 atactagaacttttacccgtgctaccgcccgggtcataaacaatggaaaagct 8977008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 241 - 288
Target Start/End: Original strand, 4659056 - 4659103
Alignment:
Q  241 actagaatttttacccgtgctaccgcccggatcataaacaatagagaa 288  Q
    ||||||| ||||||||||||||||| |||||||||||||||| |||||    
T  4659056 actagaacttttacccgtgctaccgaccggatcataaacaatggagaa 4659103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 240 - 289
Target Start/End: Complemental strand, 3066494 - 3066445
Alignment:
Q  240 tactagaatttttacccgtgctaccgcccggatcataaacaatagagaag 289  Q
    |||||||| ||||||||||||||||||| || ||||||||||| ||||||    
T  3066494 tactagaacttttacccgtgctaccgcctgggtcataaacaatggagaag 3066445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 30906235 - 30906276
Alignment:
Q  240 tactagaatttttacccgtgctaccgcccggatcataaacaa 281  Q
    |||||||| |||||||||||||||||||||| ||||||||||    
T  30906235 tactagaacttttacccgtgctaccgcccgggtcataaacaa 30906276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 33051359 - 33051407
Alignment:
Q  241 actagaatttttacccgtgctaccgcccggatcataaacaatagagaag 289  Q
    ||||||| ||||| |||||||||||||||| ||||||||||| ||||||    
T  33051359 actagaacttttatccgtgctaccgcccgggtcataaacaatggagaag 33051407  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 289
Target Start/End: Complemental strand, 19121510 - 19121459
Alignment:
Q  238 tatactagaatttttacccgtgctaccgcccggatcataaacaatagagaag 289  Q
    |||||||||| ||||||||||||||||| |||| ||||| ||||| ||||||    
T  19121510 tatactagaacttttacccgtgctaccgtccgggtcatagacaatggagaag 19121459  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 291
Target Start/End: Complemental strand, 27447262 - 27447220
Alignment:
Q  249 ttttacccgtgctaccgcccggatcataaacaatagagaagct 291  Q
    |||||||||||||||||||||| ||||||||||| || |||||    
T  27447262 ttttacccgtgctaccgcccgggtcataaacaatggaaaagct 27447220  T

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Target: chr7 (Bit Score: 93; Significance: 5e-45; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 48 - 241
Target Start/End: Original strand, 33168040 - 33168222
Alignment:
Q  48 agttggtattatagaagtacgattccaatgagataaacagtcacagatccacactaaatgatataccaagggtttgtaatcgttaaagatggttttgttc 147  Q
    |||||||||| ||||||||||| || ||||||||||||||||         || |||||  |||||||| |||||||||| |||||||||||||||||||    
T  33168040 agttggtattttagaagtacgactcaaatgagataaacagtc---------cattaaatagtataccaaaggtttgtaattgttaaagatggttttgttc 33168130  T
Q  148 accgataatcaccactccaaataacatttacttaaa-aagataggtaagtgttaaagattgggatgcaattagccaatcacccaattaatatata 241  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||| |||||||   |||||||||||||||||| ||||||||    
T  33168131 accgataatcaccactccgaataacatttacttaaagaagataggtaagcgttaaagcttgggat---attagccaatcacccaatcaatatata 33168222  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 39704314 - 39704370
Alignment:
Q  235 atatatactagaatttttacccgtgctaccgcccggatcataaacaatagagaagct 291  Q
    |||||||||| || |||||||||||||||||||| | ||||||||||| ||||||||    
T  39704314 atatatactataacttttacccgtgctaccgcccaggtcataaacaatggagaagct 39704370  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 6841474 - 6841421
Alignment:
Q  238 tatactagaatttttacccgtgctaccgcccggatcataaacaatagagaagct 291  Q
    |||||||||  ||||||||||||||| |||||| ||||||||||| ||||||||    
T  6841474 tatactagatcttttacccgtgctactgcccgggtcataaacaatggagaagct 6841421  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 11646704 - 11646752
Alignment:
Q  240 tactagaatttttacccgtgctaccgcccggatcataaacaatagagaa 288  Q
    |||||||| |||||||||||||||||| ||| ||||||||||| |||||    
T  11646704 tactagaacttttacccgtgctaccgctcgggtcataaacaatggagaa 11646752  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 39445888 - 39445848
Alignment:
Q  241 actagaatttttacccgtgctaccgcccggatcataaacaa 281  Q
    ||||||| |||||||||||||||||||||| ||||||||||    
T  39445888 actagaacttttacccgtgctaccgcccgggtcataaacaa 39445848  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 291
Target Start/End: Complemental strand, 13764994 - 13764943
Alignment:
Q  240 tactagaatttttacccgtgctaccgcccggatcataaacaatagagaagct 291  Q
    |||||||| |||||||||||||||||||||  ||||||||||| || |||||    
T  13764994 tactagaacttttacccgtgctaccgcccgagtcataaacaatggaaaagct 13764943  T

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Target: scaffold0014 (Bit Score: 88; Significance: 5e-42; HSPs: 3)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 396 - 553
Target Start/End: Complemental strand, 33799 - 33646
Alignment:
Q  396 ttattcttctaatgaatactatcaaatgaaaatcttcatcataacaatgataaaaataaatcattcatcttaaagaatttcatacctactacttctaatg 495  Q
    |||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| |||    
T  33799 ttattcttctaatga----tatcaaatgaaaatcttcatcataacaatgataaaaataaatccttcatcttaaaaaatttcataccgactacttctcatg 33704  T
Q  496 aatactactaaacgaaaatcttcatcnnnnnnntgtcaaaaataaatccttcttctca 553  Q
    ||||||||   |||||||||||||||       ||||||||||||||||||| |||||    
T  33703 aatactaccgtacgaaaatcttcatcaaaaaaatgtcaaaaataaatccttcatctca 33646  T

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Target: scaffold0014; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 241 - 348
Target Start/End: Complemental strand, 33954 - 33846
Alignment:
Q  241 actagaatttttacccgtgctaccgcccggatcataaacaatagagaagctcttgcctcagaccaaaccgggcgtcgaataaagttaa-gattcacgcat 339  Q
    ||||||| ||||||||||||||| |||||| |||||||||||  ||||||| ||||||||||||||| ||||||||||||||| |||| ||||||| |||    
T  33954 actagaacttttacccgtgctactgcccgggtcataaacaatgaagaagcttttgcctcagaccaaatcgggcgtcgaataaatttaaggattcacacat 33855  T
Q  340 tcttctctc 348  Q
    |||||||||    
T  33854 tcttctctc 33846  T

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Target: scaffold0014; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 475
Target Start/End: Complemental strand, 33712 - 33638
Alignment:
Q  401 cttctaatgaatactatcaaatgaaaatcttcatcataacaatgataaaaataaatcattcatcttaaagaattt 475  Q
    ||||| |||||||||| |  | |||||||||||||| || ||||  ||||||||||| ||||||| |||||||||    
T  33712 cttctcatgaatactaccgtacgaaaatcttcatcaaaaaaatgtcaaaaataaatccttcatctcaaagaattt 33638  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 241 - 291
Target Start/End: Complemental strand, 41813546 - 41813496
Alignment:
Q  241 actagaatttttacccgtgctaccgcccggatcataaacaatagagaagct 291  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  41813546 actagaacttttacccgtgctaccgcccggatcataaacaatggagaagct 41813496  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 17404767 - 17404815
Alignment:
Q  240 tactagaatttttacccgtgctaccgcccggatcataaacaatagagaa 288  Q
    |||||||| |||||||||||||||||| ||| ||||||||||| |||||    
T  17404767 tactagaacttttacccgtgctaccgctcgggtcataaacaatggagaa 17404815  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 19463066 - 19463014
Alignment:
Q  238 tatactagaatttttacccgtgctaccgcccggatcataaacaatagagaagct 291  Q
    |||||||||||||||||| |||||||||||| | ||||||||| | ||||||||    
T  19463066 tatactagaatttttacc-gtgctaccgcccaggtcataaacagtggagaagct 19463014  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 241 - 291
Target Start/End: Complemental strand, 24279111 - 24279061
Alignment:
Q  241 actagaatttttacccgtgctaccgcccggatcataaacaatagagaagct 291  Q
    |||||||||||||||||||||| | ||||||||||||||||| ||||||||    
T  24279111 actagaatttttacccgtgctatcacccggatcataaacaatggagaagct 24279061  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 291
Target Start/End: Original strand, 15610343 - 15610391
Alignment:
Q  243 tagaatttttacccgtgctaccgcccggatcataaacaatagagaagct 291  Q
    ||||| |||||||||||||||||||||| ||||||||||| ||||||||    
T  15610343 tagaacttttacccgtgctaccgcccgggtcataaacaatggagaagct 15610391  T

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Target: scaffold0475 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 241 - 288
Target Start/End: Original strand, 6353 - 6400
Alignment:
Q  241 actagaatttttacccgtgctaccgcccggatcataaacaatagagaa 288  Q
    ||||||| ||||||||||||||||| |||||||||||||||| |||||    
T  6353 actagaacttttacccgtgctaccgaccggatcataaacaatggagaa 6400  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 288
Target Start/End: Original strand, 2040163 - 2040210
Alignment:
Q  241 actagaatttttacccgtgctaccgcccggatcataaacaatagagaa 288  Q
    ||||||| |||||||||||||||||||||| ||||||| ||| |||||    
T  2040163 actagaacttttacccgtgctaccgcccgggtcataaataatggagaa 2040210  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 241 - 291
Target Start/End: Original strand, 33478 - 33528
Alignment:
Q  241 actagaatttttacccgtgctaccgcccggatcataaacaatagagaagct 291  Q
    ||||||| |||||||||||||||||||||  ||||||||||| || |||||    
T  33478 actagaacttttacccgtgctaccgcccgagtcataaacaatggaaaagct 33528  T

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Target: scaffold0003; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 291
Target Start/End: Original strand, 40096 - 40138
Alignment:
Q  249 ttttacccgtgctaccgcccggatcataaacaatagagaagct 291  Q
    |||||||||||||||||||||| ||||||||||| || |||||    
T  40096 ttttacccgtgctaccgcccgggtcataaacaatggaaaagct 40138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 6589 - 6541
Alignment:
Q  240 tactagaatttttacccgtgctaccgcccggatcataaacaatagagaa 288  Q
    |||||||| |||||||||||||| ||||||| |||||| |||| |||||    
T  6589 tactagaacttttacccgtgctatcgcccgggtcataaccaatggagaa 6541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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