View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8501_low_32 (Length: 252)
Name: NF8501_low_32
Description: NF8501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8501_low_32 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 7401007 - 7400784
Alignment:
| Q |
16 |
cacacgagttgtaatatgtgtttgatctttatctggtccatctattgctaaaccaaaatctgacaacttagcattgtaatcctgaaaaataattaatata |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7401007 |
cacacgagttgtaatatgtgtttgatctttatctggtccatctattgctaaaccaaaatctgacaacttagcattgtaatcctgaaaaataattaatata |
7400908 |
T |
|
| Q |
116 |
tatgttcatgtcaatttctgttgattcaatttgctctacaaattttgataattaaaatgcatgatttgaatacttacagcatccaatagaatgtttgagg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7400907 |
tatgttcatgtcaatttctgttgattcaatttgctctacaaattttgataattaaaatgcatgatttgaatacttacagcatccaatagaatgtttgagg |
7400808 |
T |
|
| Q |
216 |
ctttaacatctctatatataactg |
239 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
7400807 |
ctttaacatctctatatataactg |
7400784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University