View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8501_low_36 (Length: 241)
Name: NF8501_low_36
Description: NF8501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8501_low_36 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 50036054 - 50036277
Alignment:
| Q |
18 |
acatgtagtgtactacttgatattgttgctttgtgcacacgataccaccgtacccatgtatagaaaatttgcttgcnnnnnnnatgatcacttttctgtc |
117 |
Q |
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| T |
50036054 |
acatgtagtgtactacttgatattgttgctttgtgcacacgataccaccgtacccatgtatagaaaatttgcttgctttttttatgatcacttttctgtc |
50036153 |
T |
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| Q |
118 |
tcactctacataaactgcctcaagacacatcgaaaaggccaacatagagaaaaatgtgtgatttggttgaattcaaggaaattgatttatgtgttggatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50036154 |
tcactctacataaactgcctcaagacacatcgaaaaggccaacatagagaaaaatgtgtgatttggttgaattcaaggaaattgatttatgtgttggatt |
50036253 |
T |
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| Q |
218 |
attttgcaagactcaaagaagaga |
241 |
Q |
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|||||||||||||||||||||||| |
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| T |
50036254 |
attttgcaagactcaaagaagaga |
50036277 |
T |
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