View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8501_low_39 (Length: 233)

Name: NF8501_low_39
Description: NF8501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8501_low_39
NF8501_low_39
[»] chr4 (2 HSPs)
chr4 (20-155)||(55336259-55336394)
chr4 (20-155)||(55330821-55330956)
[»] chr2 (9 HSPs)
chr2 (20-152)||(8431153-8431285)
chr2 (21-151)||(8375861-8375991)
chr2 (21-151)||(8439112-8439242)
chr2 (21-155)||(8395540-8395674)
chr2 (21-155)||(8405898-8406032)
chr2 (20-155)||(8412014-8412149)
chr2 (20-155)||(8434112-8434247)
chr2 (20-154)||(8417232-8417366)
chr2 (41-130)||(8403959-8404048)


Alignment Details
Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 20 - 155
Target Start/End: Original strand, 55336259 - 55336394
Alignment:
Q  20 taatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactctttacaacttcaataact 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55336259 taatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactctttacaacttcaataact 55336358  T
Q  120 tccctcatttccatttctaattcttcactccatcca 155  Q
    ||||||||||||||||||||||||||||||||||||    
T  55336359 tccctcatttccatttctaattcttcactccatcca 55336394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 155
Target Start/End: Original strand, 55330821 - 55330956
Alignment:
Q  20 taatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactctttacaacttcaataact 119  Q
    ||||||||| ||  |||| | |||||| |||| ||| |||||||||||||||||||| ||||| |||||||| |||||  | || |||||||||||||||    
T  55330821 taatggaccagcagttgctaaactcttattaacctttaatgctatatttccaagtctttcataatcttcaatatctttcattttcacaacttcaataact 55330920  T
Q  120 tccctcatttccatttctaattcttcactccatcca 155  Q
    || |||| |||| |||||||||| ||||||||||||    
T  55330921 tctctcaattccttttctaattcctcactccatcca 55330956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 20 - 152
Target Start/End: Original strand, 8431153 - 8431285
Alignment:
Q  20 taatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactctttacaacttcaataact 119  Q
    |||||| ||||| ||||||| ||||||||| | |||||||||||| ||||||||||| ||||| ||||||| |||||| |||||||  ||||||| |||     
T  8431153 taatggccctgcaattgccaaactcttgtttaccttcaatgctatgtttccaagtctatcataatcttcaacgtcttttctctttatcacttcaacaaca 8431252  T
Q  120 tccctcatttccatttctaattcttcactccat 152  Q
    |||||||||||||||||||||||||||||||||    
T  8431253 tccctcatttccatttctaattcttcactccat 8431285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 8375991 - 8375861
Alignment:
Q  21 aatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactctttacaacttcaataactt 120  Q
    ||||| ||||| ||||||| ||||||||| | |||||||||||| ||||||||||| ||||| ||||||  |||||| |||||||  ||||||| |||||    
T  8375991 aatggccctgcaattgccaaactcttgtttaccttcaatgctatgtttccaagtctgtcataatcttcagcgtcttttctctttatcacttcaacaactt 8375892  T
Q  121 ccctcatttccatttctaattcttcactcca 151  Q
    |||||||||||||||| ||||||| ||||||    
T  8375891 ccctcatttccatttccaattctttactcca 8375861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 8439112 - 8439242
Alignment:
Q  21 aatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactctttacaacttcaataactt 120  Q
    ||||| ||||| ||||||| ||||||||| | |||||||||||| ||||||||||| ||||| ||||||  |||||| |||||||  ||||||| |||||    
T  8439112 aatggccctgcaattgccaaactcttgtttaccttcaatgctatgtttccaagtctgtcataatcttcagcgtcttttctctttatcacttcaacaactt 8439211  T
Q  121 ccctcatttccatttctaattcttcactcca 151  Q
    |||||||||||||||| ||||||| ||||||    
T  8439212 ccctcatttccatttccaattctttactcca 8439242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 8395674 - 8395540
Alignment:
Q  21 aatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactctttacaacttcaataactt 120  Q
    ||||| ||||| ||||||| ||||||||| | |||||| ||||| ||||||||||| ||||| ||||||  |||||| |  ||||| || |||| |||||    
T  8395674 aatggccctgcaattgccaaactcttgtttaccttcaaagctatgtttccaagtctgtcataatcttcagcgtcttttcgttttaccacgtcaacaactt 8395575  T
Q  121 ccctcatttccatttctaattcttcactccatcca 155  Q
    |||||||||||||||| ||||||||||||||||||    
T  8395574 ccctcatttccatttccaattcttcactccatcca 8395540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 155
Target Start/End: Original strand, 8405898 - 8406032
Alignment:
Q  21 aatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactctttacaacttcaataactt 120  Q
    ||||| ||||| ||||||| ||||||||| | |||||| ||||| ||||||||||| ||||| ||||||  |||||| |  ||||| || |||| |||||    
T  8405898 aatggccctgcaattgccaaactcttgtttaccttcaaagctatgtttccaagtctgtcataatcttcagcgtcttttcgttttaccacgtcaacaactt 8405997  T
Q  121 ccctcatttccatttctaattcttcactccatcca 155  Q
    |||||||||||||||| ||||||||||||||||||    
T  8405998 ccctcatttccatttccaattcttcactccatcca 8406032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 155
Target Start/End: Original strand, 8412014 - 8412149
Alignment:
Q  20 taatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactctttacaacttcaataact 119  Q
    |||||| ||||| ||||||| ||||||||| | |||||| ||||| ||||||||||| ||||| ||||||   ||||| ||||| |  ||||||   |||    
T  8412014 taatggccctgcaattgccaaactcttgtttaccttcaacgctatgtttccaagtctgtcataatcttcagaatcttttctcttgatcacttcagcgact 8412113  T
Q  120 tccctcatttccatttctaattcttcactccatcca 155  Q
    |||  |||||||||||||||||||||||||||||||    
T  8412114 tcctgcatttccatttctaattcttcactccatcca 8412149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 155
Target Start/End: Original strand, 8434112 - 8434247
Alignment:
Q  20 taatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactctttacaacttcaataact 119  Q
    |||||| ||||| ||||||| ||||||||| | |||||| ||||| ||||||||||| ||||| ||||||   ||||| ||||| |  ||||||   |||    
T  8434112 taatggccctgcaattgccaaactcttgtttaccttcaacgctatgtttccaagtctgtcataatcttcagaatcttttctcttgatcacttcagcgact 8434211  T
Q  120 tccctcatttccatttctaattcttcactccatcca 155  Q
    |||  |||||||||||||||||||||||||||||||    
T  8434212 tcctgcatttccatttctaattcttcactccatcca 8434247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 154
Target Start/End: Original strand, 8417232 - 8417366
Alignment:
Q  20 taatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactctttacaacttcaataact 119  Q
    |||||| ||||| ||||||| ||||||||| | |||||| ||||| ||||||||||| ||||| ||||||   ||||| ||||| |  ||||||   |||    
T  8417232 taatggccctgcaattgccaaactcttgtttaccttcaacgctatgtttccaagtctgtcataatcttcagaatcttttctcttgatcacttcagcgact 8417331  T
Q  120 tccctcatttccatttctaattcttcactccatcc 154  Q
    |||  |||||||||||||||||||| |||||||||    
T  8417332 tcctgcatttccatttctaattctttactccatcc 8417366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 130
Target Start/End: Original strand, 8403959 - 8404048
Alignment:
Q  41 actcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactctttacaacttcaataacttccctcatttc 130  Q
    ||||||||||||||| ||||| ||||| || | ||||||||| || ||||| ||||| ||||| || |||||||| || ||| |||||||    
T  8403959 actcttgttaatctttaatgcaatattccctaatctctcataatcctcaatatcttttctcttcaccacttcaattacctccttcatttc 8404048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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