View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8501_low_4 (Length: 505)
Name: NF8501_low_4
Description: NF8501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8501_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 3 - 134
Target Start/End: Complemental strand, 36202906 - 36202775
Alignment:
| Q |
3 |
agatggacatcaccaaaacaaagaaggcaaagaagaggaacaaaccaaacttcatgtgacatagcattatcaagaaaacttgtgcaactaagaaggtgaa |
102 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
36202906 |
agattgacatcaccaaaacaaagaaggcaaagaagaggaacaaaccaaacttcatgtgacaaagcattatcaagaaaacttgtgcaactaagaaggtgaa |
36202807 |
T |
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| Q |
103 |
aagcatgttcacagatacgtttacactttgag |
134 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
36202806 |
aagcatgttcacagatacgtttacactttgag |
36202775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 10 - 134
Target Start/End: Original strand, 35922148 - 35922272
Alignment:
| Q |
10 |
catcaccaaaacaaagaaggcaaagaagaggaacaaaccaaacttcatgtgacatagcattatcaagaaaacttgtgcaactaagaaggtgaaaagcatg |
109 |
Q |
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|||||||| ||||||||||||||||||| ||||| ||||||||||||||||| |||| | ||||||||||||||||| ||||| ||||||| |||| |
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| T |
35922148 |
catcaccactacaaagaaggcaaagaagataaacaagccaaacttcatgtgacagagcagggttaagaaaacttgtgcaacaaagaatgtgaaaaacatg |
35922247 |
T |
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| Q |
110 |
ttcacagatacgtttacactttgag |
134 |
Q |
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||||||||||| || |||||||||| |
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| T |
35922248 |
ttcacagatacattgacactttgag |
35922272 |
T |
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