View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8501_low_40 (Length: 232)

Name: NF8501_low_40
Description: NF8501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8501_low_40
NF8501_low_40
[»] chr3 (8 HSPs)
chr3 (35-103)||(29360068-29360136)
chr3 (42-103)||(22976438-22976499)
chr3 (42-97)||(25041680-25041735)
chr3 (42-97)||(39580234-39580289)
chr3 (42-97)||(21869195-21869250)
chr3 (42-97)||(959176-959231)
chr3 (42-97)||(4533811-4533866)
chr3 (43-84)||(41530371-41530412)
[»] chr7 (12 HSPs)
chr7 (38-109)||(22293192-22293263)
chr7 (42-103)||(22205004-22205065)
chr7 (42-103)||(22229674-22229735)
chr7 (38-80)||(45281169-45281211)
chr7 (42-94)||(25443942-25443994)
chr7 (43-96)||(26244664-26244717)
chr7 (42-95)||(30947902-30947955)
chr7 (46-97)||(19927939-19927990)
chr7 (42-97)||(26279626-26279681)
chr7 (64-103)||(45281109-45281148)
chr7 (171-232)||(22205142-22205203)
chr7 (171-232)||(22229536-22229597)
[»] chr5 (7 HSPs)
chr5 (42-103)||(6666032-6666093)
chr5 (42-97)||(8871585-8871640)
chr5 (42-109)||(32659237-32659306)
chr5 (171-232)||(32659090-32659151)
chr5 (175-232)||(6665878-6665935)
chr5 (42-89)||(13854375-13854422)
chr5 (42-98)||(36606478-36606534)
[»] chr8 (8 HSPs)
chr8 (42-97)||(10861489-10861544)
chr8 (42-97)||(17068516-17068571)
chr8 (42-97)||(17579702-17579757)
chr8 (42-97)||(34964430-34964485)
chr8 (42-103)||(3046453-3046514)
chr8 (41-97)||(17630843-17630899)
chr8 (42-97)||(29054904-29054959)
chr8 (175-232)||(3046611-3046668)
[»] chr4 (2 HSPs)
chr4 (42-97)||(54260466-54260521)
chr4 (66-109)||(26261507-26261550)
[»] chr2 (3 HSPs)
chr2 (42-97)||(14314069-14314124)
chr2 (42-96)||(14811618-14811672)
chr2 (43-107)||(13043510-13043574)
[»] scaffold0017 (1 HSPs)
scaffold0017 (42-97)||(37732-37787)
[»] chr6 (2 HSPs)
chr6 (42-97)||(21112429-21112484)
chr6 (42-98)||(8862370-8862426)
[»] chr1 (2 HSPs)
chr1 (42-109)||(33369127-33369193)
chr1 (42-96)||(46397778-46397832)


Alignment Details
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 29360136 - 29360068
Alignment:
Q  35 gatcacatttgtctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaacagtttttt 103  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29360136 gatcacatttatctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaacagtttttt 29360068  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 22976438 - 22976499
Alignment:
Q  42 tttgtctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaacagtttttt 103  Q
    ||||||||||||||||| ||| |||||||||||||||||| |||||||| ||||||||||||    
T  22976438 tttgtctaatgttgactacttaatagttaacactaatttatatcgaaaataaacagtttttt 22976499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 25041735 - 25041680
Alignment:
Q  42 tttgtctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaacag 97  Q
    ||||||||||||||||| ||| | |||||||||||||||| |||||||||||||||    
T  25041735 tttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaacag 25041680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 39580289 - 39580234
Alignment:
Q  42 tttgtctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaacag 97  Q
    ||||||||||||||||| ||| | |||||||||||||||| |||||||||||||||    
T  39580289 tttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaacag 39580234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 21869250 - 21869195
Alignment:
Q  42 tttgtctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaacag 97  Q
    ||||||||||||||||| ||| | |||||||||||||||| || ||||||||||||    
T  21869250 tttgtctaatgttgactacttaacagttaacactaatttatattgaaaacaaacag 21869195  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 959231 - 959176
Alignment:
Q  42 tttgtctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaacag 97  Q
    ||||||||||||||||| ||| |  |||| |||||||||| |||||||||||||||    
T  959231 tttgtctaatgttgactacttaacggttatcactaatttatatcgaaaacaaacag 959176  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 4533866 - 4533811
Alignment:
Q  42 tttgtctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaacag 97  Q
    |||||||||||||||||  || | |||||||| ||||||| |||||||||||||||    
T  4533866 tttgtctaatgttgactaattaacagttaacaataatttatatcgaaaacaaacag 4533811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 41530371 - 41530412
Alignment:
Q  43 ttgtctaatgttgactgcttgatagttaacactaatttagat 84  Q
    |||||||||||||||| ||| |||||||||||||||| ||||    
T  41530371 ttgtctaatgttgactactttatagttaacactaattgagat 41530412  T

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Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 38 - 109
Target Start/End: Complemental strand, 22293263 - 22293192
Alignment:
Q  38 cacatttgtctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaacagttttttcccaat 109  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||| ||||||||||||    
T  22293263 cacatttgtctaatgttgactacttaatagttaacactaatttagatcaaaaacaaacaattttttcccaat 22293192  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 22205004 - 22205065
Alignment:
Q  42 tttgtctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaacagtttttt 103  Q
    ||||||||||||||||| | | |||||||||||||||||| |||||||| ||||||||||||    
T  22205004 tttgtctaatgttgactacctaatagttaacactaatttatatcgaaaagaaacagtttttt 22205065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 22229735 - 22229674
Alignment:
Q  42 tttgtctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaacagtttttt 103  Q
    ||||||||||||||||| | | |||||||||||||||||| |||||||| ||||||||||||    
T  22229735 tttgtctaatgttgactacctaatagttaacactaatttatatcgaaaagaaacagtttttt 22229674  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 80
Target Start/End: Complemental strand, 45281211 - 45281169
Alignment:
Q  38 cacatttgtctaatgttgactgcttgatagttaacactaattt 80  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  45281211 cacatttgtctaatgttgactgcttaatagttaacactaattt 45281169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 25443994 - 25443942
Alignment:
Q  42 tttgtctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaa 94  Q
    ||||||||||||||||| ||| | |||||||||||||||| ||||||||||||    
T  25443994 tttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaa 25443942  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 26244664 - 26244717
Alignment:
Q  43 ttgtctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaaca 96  Q
    |||||||||||||||| ||| ||| |||||||||||| |||| |||||||||||    
T  26244664 ttgtctaatgttgactacttaataattaacactaattgagattgaaaacaaaca 26244717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 30947955 - 30947902
Alignment:
Q  42 tttgtctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaac 95  Q
    |||||||||||||||||  || | |||||||||||||||| |||||||||||||    
T  30947955 tttgtctaatgttgactatttaacagttaacactaatttatatcgaaaacaaac 30947902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 19927939 - 19927990
Alignment:
Q  46 tctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaacag 97  Q
    ||||||||||||| ||| | ||||| |||||||||| |||||||||||||||    
T  19927939 tctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacag 19927990  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 26279626 - 26279681
Alignment:
Q  42 tttgtctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaacag 97  Q
    |||||| |||||||||| ||| | |||||||| ||||||| |||||||||||||||    
T  26279626 tttgtccaatgttgactacttaacagttaacattaatttatatcgaaaacaaacag 26279681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 103
Target Start/End: Complemental strand, 45281148 - 45281109
Alignment:
Q  64 atagttaacactaatttagatcgaaaacaaacagtttttt 103  Q
    |||||||||||||||||| |||||||||||||| ||||||    
T  45281148 atagttaacactaatttatatcgaaaacaaacaatttttt 45281109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 22205142 - 22205203
Alignment:
Q  171 tagctatcgctatatggtgacgagaaaccctannnnnnngggttagaagagacaatatgttt 232  Q
    ||||||||||||| ||||||||||||||||||       ||| |||||||||||| ||||||    
T  22205142 tagctatcgctatttggtgacgagaaaccctatttttttgggatagaagagacaaaatgttt 22205203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 22229597 - 22229536
Alignment:
Q  171 tagctatcgctatatggtgacgagaaaccctannnnnnngggttagaagagacaatatgttt 232  Q
    ||||||||||||| ||||||||||||||||||       ||| |||||||||||| ||||||    
T  22229597 tagctatcgctatttggtgacgagaaaccctatttttttgggatagaagagacaaaatgttt 22229536  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 6666093 - 6666032
Alignment:
Q  42 tttgtctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaacagtttttt 103  Q
    ||||||||||||||||| |||  ||||||||||||||||| |||||||||||||||||||||    
T  6666093 tttgtctaatgttgactacttactagttaacactaatttatatcgaaaacaaacagtttttt 6666032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 8871640 - 8871585
Alignment:
Q  42 tttgtctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaacag 97  Q
    ||||||||||||||||| ||| | |||||||||||||||| |||||||||||||||    
T  8871640 tttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaacag 8871585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 32659306 - 32659237
Alignment:
Q  42 tttgtctaatgttgactgcttgatagttaacactaatttagat--cgaaaacaaacagttttttcccaat 109  Q
    ||||||||||||||||| ||| |||||||||||||||||||||    ||||||||||| |||||||||||    
T  32659306 tttgtctaatgttgactacttaatagttaacactaatttagataaaaaaaacaaacagctttttcccaat 32659237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 32659151 - 32659090
Alignment:
Q  171 tagctatcgctatatggtgacgagaaaccctannnnnnngggttagaagagacaatatgttt 232  Q
    ||||||||||||| ||||||||||||||||||       |||||||||||||||||||||||    
T  32659151 tagctatcgctatgtggtgacgagaaaccctatattttggggttagaagagacaatatgttt 32659090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 6665935 - 6665878
Alignment:
Q  175 tatcgctatatggtgacgagaaaccctannnnnnngggttagaagagacaatatgttt 232  Q
    ||||||||| ||||||||||||||||||       |||||||||||||||||||||||    
T  6665935 tatcgctatgtggtgacgagaaaccctatttttttgggttagaagagacaatatgttt 6665878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 13854375 - 13854422
Alignment:
Q  42 tttgtctaatgttgactgcttgatagttaacactaatttagatcgaaa 89  Q
    ||||||||||||||||| ||| | |||||||||||||||| |||||||    
T  13854375 tttgtctaatgttgactacttaacagttaacactaatttatatcgaaa 13854422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 36606534 - 36606478
Alignment:
Q  42 tttgtctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaacagt 98  Q
    ||||||||||||||||| ||| | |||||| ||||||||| ||  ||||||||||||    
T  36606534 tttgtctaatgttgactacttaacagttaatactaatttatattaaaaacaaacagt 36606478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 10861489 - 10861544
Alignment:
Q  42 tttgtctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaacag 97  Q
    ||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||    
T  10861489 tttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacag 10861544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 17068571 - 17068516
Alignment:
Q  42 tttgtctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaacag 97  Q
    ||||||||||||||||| ||| | |||||||||||||||| |||||||||||||||    
T  17068571 tttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaacag 17068516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 17579702 - 17579757
Alignment:
Q  42 tttgtctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaacag 97  Q
    ||||||||||||||||| ||| | |||||||||||||||| |||||||||||||||    
T  17579702 tttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaacag 17579757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 34964430 - 34964485
Alignment:
Q  42 tttgtctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaacag 97  Q
    ||||||||||||||||| ||| | |||||||||||||||| |||||||||||||||    
T  34964430 tttgtctaatgttgactacttaacagttaacactaatttacatcgaaaacaaacag 34964485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 3046453 - 3046514
Alignment:
Q  42 tttgtctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaacagtttttt 103  Q
    ||||||||||||||||| ||| ||| |||||||||||||| ||| |||||||||| ||||||    
T  3046453 tttgtctaatgttgactacttaatatttaacactaatttatatcaaaaacaaacaatttttt 3046514  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 17630843 - 17630899
Alignment:
Q  41 atttgtctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaacag 97  Q
    |||||||||||||||||| ||| | |||||||||||||||| ||||||||| |||||    
T  17630843 atttgtctaatgttgactacttaacagttaacactaatttatatcgaaaactaacag 17630899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 29054959 - 29054904
Alignment:
Q  42 tttgtctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaacag 97  Q
    ||||||||||||||||| ||| |  ||||||||||||||| |||||||||||||||    
T  29054959 tttgtctaatgttgactacttaaccgttaacactaatttatatcgaaaacaaacag 29054904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 3046611 - 3046668
Alignment:
Q  175 tatcgctatatggtgacgagaaaccctannnnnnngggttagaagagacaatatgttt 232  Q
    ||||| ||| ||||||||||||||||||       |||||||||||||||||||||||    
T  3046611 tatcgttatgtggtgacgagaaaccctatttttttgggttagaagagacaatatgttt 3046668  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 54260521 - 54260466
Alignment:
Q  42 tttgtctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaacag 97  Q
    ||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||    
T  54260521 tttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacag 54260466  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 109
Target Start/End: Complemental strand, 26261550 - 26261507
Alignment:
Q  66 agttaacactaatttagatcgaaaacaaacagttttttcccaat 109  Q
    |||||||||||||| |||| ||||||||||| ||||||||||||    
T  26261550 agttaacactaattgagattgaaaacaaacaattttttcccaat 26261507  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 14314069 - 14314124
Alignment:
Q  42 tttgtctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaacag 97  Q
    ||||||||||||||||| ||| | |||||||||||||||| |||||||||||||||    
T  14314069 tttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaacag 14314124  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 14811672 - 14811618
Alignment:
Q  42 tttgtctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaaca 96  Q
    ||||||||||||||||| ||| | |||||||||||||||| ||||||||||||||    
T  14811672 tttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaaca 14811618  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 13043510 - 13043574
Alignment:
Q  43 ttgtctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaacagttttttccca 107  Q
    |||||||||||||||  ||| ||| |||||||||||| |||| ||||||||||| ||||||||||    
T  13043510 ttgtctaatgttgaccacttaatacttaacactaattgagattgaaaacaaacaattttttccca 13043574  T

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Target: scaffold0017 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 37732 - 37787
Alignment:
Q  42 tttgtctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaacag 97  Q
    ||||||||||||||||| ||| | ||||||||| |||||| |||||||||||||||    
T  37732 tttgtctaatgttgactacttaacagttaacacaaatttatatcgaaaacaaacag 37787  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 21112484 - 21112429
Alignment:
Q  42 tttgtctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaacag 97  Q
    ||||||||||||||||| ||| | |||||||||||||||| ||| |||||||||||    
T  21112484 tttgtctaatgttgactacttaacagttaacactaatttatatcaaaaacaaacag 21112429  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 8862426 - 8862370
Alignment:
Q  42 tttgtctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaacagt 98  Q
    ||||||||||||||||  ||| | ||||| |||||||||| ||||||||||||||||    
T  8862426 tttgtctaatgttgaccacttaacagttatcactaatttatatcgaaaacaaacagt 8862370  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 33369193 - 33369127
Alignment:
Q  42 tttgtctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaacagttttttcccaat 109  Q
    ||||||||||||||||| ||| ||||||||||||| ||||||| ||||| || || ||||||||||||    
T  33369193 tttgtctaatgttgactacttaatagttaacactattttagattgaaaa-aatcaattttttcccaat 33369127  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 46397778 - 46397832
Alignment:
Q  42 tttgtctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaaca 96  Q
    ||||||||||||||| | ||| |||||||||| ||||||| ||||||||||||||    
T  46397778 tttgtctaatgttgattacttaatagttaacaataatttatatcgaaaacaaaca 46397832  T

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