View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8501_low_8 (Length: 459)
Name: NF8501_low_8
Description: NF8501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8501_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 54 - 445
Target Start/End: Complemental strand, 43174598 - 43174207
Alignment:
| Q |
54 |
ttactctttacatgctttcattctcaccaagatgatattttgaacaactcaagcaataaaattaattgaataatcaagtccacctacgataaccagatga |
153 |
Q |
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| T |
43174598 |
ttactctttacatgctttcattctcaccaagatgatattttgaacaactcaagcaataaaattaattgaataatcaagtccacctacgataaccagatga |
43174499 |
T |
|
| Q |
154 |
agatagttgacttacagaactctcaagaagcacagctgagataggaaatctggcactgcaccagtcaaattgttatctgacaaatccctaatattggagc |
253 |
Q |
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| T |
43174498 |
agatagttgacttacagaactctcaagaagcgcagctgagataggaaatctggcactgcaccagtcaaattgttatctgacaaatccctaatattggaac |
43174399 |
T |
|
| Q |
254 |
aaaatgtttttactcaactttaagagtatgcatcatttttgtgatcaacttactagcttgctatttgtttttcgtgtacataatagattcaagaactctc |
353 |
Q |
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| T |
43174398 |
aaaatgtttttactcaactttaagagtatgcttcattttagtgatcaacttactagcttgctatttgtttttcgtgtacataatagattcaagaactctc |
43174299 |
T |
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| Q |
354 |
tattgacttcagattggatatcccagaagctatagttccaattaaaccgctggaagttaagttcctgaagcatgattatgaaattcattcat |
445 |
Q |
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| T |
43174298 |
tattgacttcagattggatatcccagaagctatagttccaattaaaccgctggaagttaagttcctgaagcatgattatgaaattcattcat |
43174207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 151 - 437
Target Start/End: Original strand, 43222969 - 43223263
Alignment:
| Q |
151 |
tgaagatagttgacttacagaactctcaagaagcacagctgagataggaaatctggcactgcaccagtcaaattgttatctgacaaatccctaatattgg |
250 |
Q |
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| T |
43222969 |
tgaagaaagttgacttacagaactctcaagaagcgcggctgagataggaaatcaggcacagctccagtcaaattgttatttgacaaatccctaaaattgg |
43223068 |
T |
|
| Q |
251 |
agcaaaatgtttttactcaactttaagagtatgcatcatttttgtgatcaacttactagcttgctatttgtttttcgtgtacataatagattcaagaact |
350 |
Q |
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| T |
43223069 |
aacaaaatgtttttactcaactttaagagtatgcttcatttttgggatcaacttattagcttgctatttgttttttgtgtacataatagattcaagaact |
43223168 |
T |
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| Q |
351 |
--------ctctattgacttcagattggatatcccagaagctatagttccaattaaaccgctggaagttaagttcctgaagcatgattatgaaat |
437 |
Q |
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| T |
43223169 |
tacaaatattctattgacttcagattggatatcccagaagctatagttccaattaaaccgctggaagttaagttcctaaagcatgattatgaaat |
43223263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 143 - 275
Target Start/End: Complemental strand, 43164802 - 43164670
Alignment:
| Q |
143 |
taaccagatgaagatagttgacttacagaactctcaagaagcacagctgagataggaaatctggcactgcaccagtcaaattgttatctgacaaatccct |
242 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
43164802 |
taaccatatgaagatagttgacttacagaactctcaagaagcgcagctgagataggaaatctggcacagcaccagtcaaattgttatttgacaaatccct |
43164703 |
T |
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| Q |
243 |
aatattggagcaaaatgtttttactcaacttta |
275 |
Q |
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| T |
43164702 |
aaaattggaacaaaatgtttttactcaacttta |
43164670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 352 - 438
Target Start/End: Complemental strand, 43164594 - 43164508
Alignment:
| Q |
352 |
tctattgacttcagattggatatcccagaagctatagttccaattaaaccgctggaagttaagttcctgaagcatgattatgaaatt |
438 |
Q |
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| T |
43164594 |
tctatggacttcagattggatatgccagcagctatagttccaattaaaccgctggaagttaagttcctaaagcatggttatgaaatt |
43164508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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