View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8501_low_9 (Length: 454)
Name: NF8501_low_9
Description: NF8501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8501_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 1150280 - 1150716
Alignment:
| Q |
1 |
ttgaactgccaatcctttcccaagacaaaaaccgcgacaacacgatcccaatcctcgggtttaagtgcagaaggcttatccctaacttcataagcagtaa |
100 |
Q |
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| T |
1150280 |
ttgaactgccaatcctttcccaagacaaaaaccgcgacaacacgatcccaatcctcgggtttaagtgcagaaggcttatccctaacttcataagcagtaa |
1150379 |
T |
|
| Q |
101 |
cagctctatccctactaagcttcttctgaacagtaacacaatccggcttagcacctttcatcgctttaaccttaacatcagtaggtacataaaccccatc |
200 |
Q |
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| T |
1150380 |
cagctctatccctactaagcttcttctgaacagtaacacaatccggcttagcacctttcatcgctttaaccttaacatcagtaggtacataaaccccatc |
1150479 |
T |
|
| Q |
201 |
ttccaaaaaatccttaacattatagatagtaataagtgtctgaaaagcactcggaaccaaaataattggaacaccttccccgattttaagatgcatttta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1150480 |
ttccaaaaaatccttaacattatagatagtaataagtgtctgaaaagcactcggaaccaaaataattggaacaccttccccgattttaagatgcatttta |
1150579 |
T |
|
| Q |
301 |
ggtttcggtgtttgatgatcatatcccatttcatcaccgccaaaatcatcagcacttcccaacaacctactcttagcaactaaaccgtctttcctttgat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1150580 |
ggtttcggtgtttgatgatcatatcccatttcatcaccaccaaaatcatcagcacttcccaacaacctactcttagcaactaaaccgtctttcctttgat |
1150679 |
T |
|
| Q |
401 |
gagactccgccctctgacgctcctcttcgcgtttagt |
437 |
Q |
| |
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| T |
1150680 |
gagactccgccctctgacgctcctcttctcgtttagt |
1150716 |
T |
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