View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8502_high_3 (Length: 329)

Name: NF8502_high_3
Description: NF8502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8502_high_3
NF8502_high_3
[»] chr4 (5 HSPs)
chr4 (1-311)||(6019071-6019381)
chr4 (193-311)||(16422337-16422455)
chr4 (194-311)||(44203602-44203722)
chr4 (242-306)||(41389294-41389358)
chr4 (242-310)||(41389181-41389251)
[»] chr5 (3 HSPs)
chr5 (193-311)||(408238-408356)
chr5 (242-311)||(41485065-41485134)
chr5 (107-173)||(408379-408445)
[»] chr6 (4 HSPs)
chr6 (192-311)||(18849567-18849686)
chr6 (193-311)||(16358754-16358871)
chr6 (224-310)||(26045833-26045920)
chr6 (224-310)||(26141533-26141620)
[»] scaffold0215 (1 HSPs)
scaffold0215 (193-311)||(24761-24879)
[»] chr8 (2 HSPs)
chr8 (193-311)||(3372107-3372225)
chr8 (193-267)||(9035580-9035654)
[»] scaffold0025 (1 HSPs)
scaffold0025 (194-302)||(36914-37022)
[»] chr3 (1 HSPs)
chr3 (186-307)||(4477389-4477509)
[»] chr2 (2 HSPs)
chr2 (232-311)||(41454895-41454974)
chr2 (224-311)||(13693723-13693810)
[»] chr1 (1 HSPs)
chr1 (193-311)||(35812107-35812225)
[»] chr7 (2 HSPs)
chr7 (242-311)||(33164297-33164369)
chr7 (186-311)||(28195320-28195444)


Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 6019071 - 6019381
Alignment:
Q  1 tatatggtaaattagtttcttcgtcgtcactaattttctattttatagcttagatccaaaacgaagcaattgtcaatatcaggtaaaatgtcacttgaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6019071 tatatggtaaattagtttcttcgtcgtcactaattttctattttatagcttagatccaaaacgaagcaattgtcaatatcaggtaaaatgtcacttgaaa 6019170  T
Q  101 gtttgcaactatgatgcataggaacgggtatggtatctggtacgatacgagtactggttccagaatacgacaacattnnnnnnnnggtacaagtacgtca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||        |||||||||||||||    
T  6019171 gtttgcaactatgatgcataggaacgggtatggtatctggtacgatacgagtactggttccaaaatacgacaacattaaaaaaaaggtacaagtacgtca 6019270  T
Q  201 ataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagtcgaaattta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6019271 ataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagtcgaaattta 6019370  T
Q  301 gagttggttac 311  Q
    |||||||||||    
T  6019371 gagttggttac 6019381  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 193 - 311
Target Start/End: Original strand, 16422337 - 16422455
Alignment:
Q  193 gtacgtcaataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagtc 292  Q
    |||||| | |||||||| || ||||||||| ||||| ||||||||||| ||||||||||| |||| || |||||| ||||||  |||| |||||||||||    
T  16422337 gtacgttagtaaaatcagaagttttgttatagaatataacatgaaagagttaaattcttcgattcgcagcaaaaaaatcacaatagaagtttaaaaagtc 16422436  T
Q  293 gaaatttagagttggttac 311  Q
     ||||||||||||||||||    
T  16422437 aaaatttagagttggttac 16422455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 311
Target Start/End: Original strand, 44203602 - 44203722
Alignment:
Q  194 tacgtcaataaaatcataaattttgttatgg---aatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaag 290  Q
    ||||||||||||||||||| |||||||||     |||| |||||| ||||  |||||||||||| | |||||||||| | ||||  | ||||| ||||||    
T  44203602 tacgtcaataaaatcataagttttgttatactataatataacatggaagagataaattcttcaactgacaacaaaaacagcacaataaaaattaaaaaag 44203701  T
Q  291 tcgaaatttagagttggttac 311  Q
    | |||||||||||||||||||    
T  44203702 ttgaaatttagagttggttac 44203722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 306
Target Start/End: Original strand, 41389294 - 41389358
Alignment:
Q  242 ttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagtcgaaatttagagttg 306  Q
    |||||||||| |||||||||||||||  |||  | |||||||||||||||||||| ||| |||||    
T  41389294 ttaaattctttaattcacaacaaaaaattcaggttagaaatttaaaaagtcgaaacttatagttg 41389358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 310
Target Start/End: Original strand, 41389181 - 41389251
Alignment:
Q  242 ttaaattcttcaattcacaacaaaaata--tcacatcagaaatttaaaaagtcgaaatttagagttggtta 310  Q
    |||||||||||||||||||| ||||| |  |||||  | |||||||||||||||||| | |||||||||||    
T  41389181 ttaaattcttcaattcacaaaaaaaaaaactcacaataaaaatttaaaaagtcgaaactaagagttggtta 41389251  T

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Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 193 - 311
Target Start/End: Complemental strand, 408356 - 408238
Alignment:
Q  193 gtacgtcaataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagtc 292  Q
    |||||||||||||||||||| ||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  408356 gtacgtcaataaaatcataagttttgttatagaatataacatgaaagaattaaattcttcaattcacaacaaaaaaatcacatcagaagtttaaaaagtc 408257  T
Q  293 gaaatttagagttggttac 311  Q
     ||||||||||| ||||||    
T  408256 caaatttagagtcggttac 408238  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 311
Target Start/End: Original strand, 41485065 - 41485134
Alignment:
Q  242 ttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagtcgaaatttagagttggttac 311  Q
    |||||||||||||||||| ||||||| ||||||  |||| |||| |||||| ||||||| ||||||||||    
T  41485065 ttaaattcttcaattcacgacaaaaaaatcacaatagaagtttacaaagtcaaaatttaaagttggttac 41485134  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 408445 - 408379
Alignment:
Q  107 aactatgatgcataggaacgggtatggtatctggtacgatacgagtactggttccagaatacgacaa 173  Q
    ||||||| |||||||| ||||||| |||| ||||||||||||  |||||||| | |||||||| |||    
T  408445 aactatgttgcataggcacgggtacggtacctggtacgatacaggtactggtacgagaatacggcaa 408379  T

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Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 192 - 311
Target Start/End: Complemental strand, 18849686 - 18849567
Alignment:
Q  192 agtacgtcaataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagt 291  Q
    ||||||||||||||||||||| |||||| || ||||| |||||||| || ||||||||||||||||| ||||| || ||||||| |||| |||||||| |    
T  18849686 agtacgtcaataaaatcataagttttgtcatagaatataacatgaaggagttaaattcttcaattcataacaagaaaatcacattagaagtttaaaaatt 18849587  T
Q  292 cgaaatttagagttggttac 311  Q
    ||||||||||||||||||||    
T  18849586 cgaaatttagagttggttac 18849567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 193 - 311
Target Start/End: Original strand, 16358754 - 16358871
Alignment:
Q  193 gtacgtcaataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagtc 292  Q
    |||||||||||||||||||| ||||||||| ||||| |||||||| || ||||||||||||||||| || || || ||||||| |||| |||||||||||    
T  16358754 gtacgtcaataaaatcataagttttgttatagaatataacatgaaggagttaaattcttcaattcataa-aagaaaatcacattagaagtttaaaaagtc 16358852  T
Q  293 gaaatttagagttggttac 311  Q
    |||||||||||||||||||    
T  16358853 gaaatttagagttggttac 16358871  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 310
Target Start/End: Original strand, 26045833 - 26045920
Alignment:
Q  224 gaatacaacatgaaagatttaaattcttcaattcacaacaaa-aatatcacatcagaaatttaaaaagtcgaaatttagagttggtta 310  Q
    ||||| |||||| |||| ||||||||||||||| | || ||| || || |||| |||| ||||||||||| |||||||||||||||||    
T  26045833 gaatataacatggaagagttaaattcttcaatttataaaaaataaaatgacattagaagtttaaaaagtcaaaatttagagttggtta 26045920  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 310
Target Start/End: Original strand, 26141533 - 26141620
Alignment:
Q  224 gaatacaacatgaaagatttaaattcttcaattcacaacaaa-aatatcacatcagaaatttaaaaagtcgaaatttagagttggtta 310  Q
    ||||| |||||| |||| ||||||||||||||| | || ||| || || |||| |||| ||||||||||| |||||||||||||||||    
T  26141533 gaatataacatggaagagttaaattcttcaatttataaaaaataaaatgacattagaagtttaaaaagtcaaaatttagagttggtta 26141620  T

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Target: scaffold0215 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0215
Description:

Target: scaffold0215; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 193 - 311
Target Start/End: Original strand, 24761 - 24879
Alignment:
Q  193 gtacgtcaataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagtc 292  Q
    |||||||||||||||||||| |||||| || ||||| |||||||| || ||||||||||||||||| ||||| || ||||||| |||| |||||||| ||    
T  24761 gtacgtcaataaaatcataagttttgtcatagaatataacatgaaggagttaaattcttcaattcataacaagaaaatcacattagaagtttaaaaattc 24860  T
Q  293 gaaatttagagttggttac 311  Q
    |||||||||||||||||||    
T  24861 gaaatttagagttggttac 24879  T

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Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 193 - 311
Target Start/End: Original strand, 3372107 - 3372225
Alignment:
Q  193 gtacgtcaataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagtc 292  Q
    |||||||||||||||||||| |||||| || ||||| |||||||| || ||||||||||||||||| ||||| || ||||||| |||| |||||||| ||    
T  3372107 gtacgtcaataaaatcataagttttgtcatagaatataacatgaaggagttaaattcttcaattcataacaagaaaatcacattagaagtttaaaaattc 3372206  T
Q  293 gaaatttagagttggttac 311  Q
    |||||||||||||||||||    
T  3372207 gaaatttagagttggttac 3372225  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 193 - 267
Target Start/End: Complemental strand, 9035654 - 9035580
Alignment:
Q  193 gtacgtcaataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaa 267  Q
    |||||||||||||||||||||||||||| | ||| | ||||||||||| |||||||||||||||| |||||||||    
T  9035654 gtacgtcaataaaatcataaattttgttttagaaaataacatgaaagagttaaattcttcaattcccaacaaaaa 9035580  T

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Target: scaffold0025 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 194 - 302
Target Start/End: Complemental strand, 37022 - 36914
Alignment:
Q  194 tacgtcaataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagtcg 293  Q
    ||||||||||||||||||| ||||||||| ||||| ||||||||||| |||||||||||||||||||||||||  ||||||| |  | |||||||||| |    
T  37022 tacgtcaataaaatcataagttttgttatagaatataacatgaaagagttaaattcttcaattcacaacaaaataatcacattaatagtttaaaaagttg 36923  T
Q  294 aaatttaga 302  Q
    |||||||||    
T  36922 aaatttaga 36914  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 186 - 307
Target Start/End: Original strand, 4477389 - 4477509
Alignment:
Q  186 ggtacaagtacgtcaataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaattta 285  Q
    |||||| ||||||||||||||| |||| ||||||||| ||||| ||||||||| | ||||||||||| |||||||| ||||| ||||||| |||| ||||    
T  4477389 ggtacatgtacgtcaataaaattataagttttgttatagaatataacatgaaaaagttaaattcttcgattcacaataaaaa-atcacattagaagttta 4477487  T
Q  286 aaaagtcgaaatttagagttgg 307  Q
    |||||| ||||  |||||||||    
T  4477488 aaaagttgaaacatagagttgg 4477509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 232 - 311
Target Start/End: Complemental strand, 41454974 - 41454895
Alignment:
Q  232 catgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagtcgaaatttagagttggttac 311  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||  |||| ||||||||||||||||||||||||||||||    
T  41454974 catgaaagagttaaattcttcgattcacaacaaaaaaatcacaatagaagtttaaaaagtcgaaatttagagttggttac 41454895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 311
Target Start/End: Original strand, 13693723 - 13693810
Alignment:
Q  224 gaatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagtcgaaatttagagttggttac 311  Q
    ||||| |||||||| || |||||| ||||||||| ||||||  | ||||||  ||||  |||||||||| ||||||||||||||||||    
T  13693723 gaatataacatgaatgagttaaatgcttcaattcccaacaaggaaatcacaatagaagattaaaaagtcaaaatttagagttggttac 13693810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 193 - 311
Target Start/End: Original strand, 35812107 - 35812225
Alignment:
Q  193 gtacgtcaataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagtc 292  Q
    |||||||||||||||||| | |||||||||  |||| ||||||| |||  | |||||||||||| ||||||||||||| ||   | || |||||||||||    
T  35812107 gtacgtcaataaaatcatgagttttgttatataatataacatgagagagctgaattcttcaatttacaacaaaaatattacgataaaagtttaaaaagtc 35812206  T
Q  293 gaaatttagagttggttac 311  Q
    ||||  |||||||||||||    
T  35812207 gaaaactagagttggttac 35812225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 311
Target Start/End: Original strand, 33164297 - 33164369
Alignment:
Q  242 ttaaattcttcaattcacaacaaaaata---tcacatcagaaatttaaaaagtcgaaatttagagttggttac 311  Q
    ||||||||||| || ||||||||||| |   |||||| |||| ||||||||||||||||||||||||||||||    
T  33164297 ttaaattcttctatccacaacaaaaaaaaaatcacattagaagtttaaaaagtcgaaatttagagttggttac 33164369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 311
Target Start/End: Complemental strand, 28195444 - 28195320
Alignment:
Q  186 ggtacaagtacgtcaataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaat-atcacatcagaaattt 284  Q
    |||||| || |||||| |||||||| | |||||||||  |||| |||||||  ||  |||||||||||| |  |||||||||  ||||||  |||| |||    
T  28195444 ggtacaggtgcgtcaagaaaatcatgagttttgttatataatataacatga--gacctaaattcttcaactttcaacaaaaaacatcacaatagaagttt 28195347  T
Q  285 aaaaagtcgaaatttagagttggttac 311  Q
    |||||||||||| ||||||||||||||    
T  28195346 aaaaagtcgaaaattagagttggttac 28195320  T

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